Wall clock time and date at job start Tue Mar 31 2020 05:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99568 * 2 1 4 4 N 1.46500 * 109.47144 * 125.00234 * 3 2 1 5 5 C 1.32261 * 120.23708 * 270.00094 * 4 3 2 6 6 O 1.21718 * 122.52304 * 0.04190 * 5 4 3 7 7 C 1.46766 * 114.94854 * 180.02562 * 5 4 3 8 8 C 1.35817 * 127.96882 * 180.02562 * 7 5 4 9 9 C 1.46761 * 120.00138 * 351.94895 * 8 7 5 10 10 C 1.40127 * 120.08698 * 321.57148 * 9 8 7 11 11 C 1.37629 * 119.98787 * 179.71964 * 10 9 8 12 12 C 1.39074 * 120.17166 * 0.54988 * 11 10 9 13 13 O 1.35615 * 119.91361 * 179.70117 * 12 11 10 14 14 C 1.34755 * 117.00052 * 5.69179 * 13 12 11 15 15 H 1.08004 * 119.99769 * 354.90275 * 14 13 12 16 16 C 1.38676 * 120.00029 * 174.90326 * 14 13 12 17 17 N 1.31541 * 120.00056 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47180 * 59.99733 * 18 16 14 20 20 H 1.48494 * 109.47189 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46766 * 299.99635 * 18 16 14 22 22 C 1.39646 * 120.17247 * 359.72452 * 12 11 10 23 23 O 1.35958 * 119.99317 * 180.02562 * 22 12 11 24 24 C 1.42899 * 116.99636 * 179.97438 * 23 22 12 25 25 C 1.38049 * 120.00940 * 359.97438 * 22 12 11 26 26 S 1.77485 * 104.06220 * 0.02562 * 7 5 4 27 27 C 1.33789 * 120.24162 * 90.02468 * 4 3 2 28 28 S 1.71197 * 126.55087 * 0.23271 * 27 4 3 29 29 H 1.07995 * 119.99747 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.07992 * 120.00533 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47373 * 4.99700 * 3 2 1 33 33 H 1.09000 * 109.46781 * 244.99955 * 3 2 1 34 34 H 1.08003 * 119.99844 * 171.94613 * 8 7 5 35 35 H 1.07992 * 120.00615 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.91446 * 180.27967 * 11 10 9 37 37 H 0.96993 * 119.99830 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.47660 * 299.99806 * 24 23 22 39 39 H 1.09006 * 109.47244 * 60.00107 * 24 23 22 40 40 H 1.09002 * 109.46847 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.08482 * 180.02562 * 25 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3321 1.1314 5 6 2.6061 1.8122 2.3012 6 8 1.4843 2.2444 2.4919 7 6 3.6302 1.7841 3.3521 8 6 3.5194 2.2059 4.6383 9 6 2.3198 2.9317 5.0718 10 6 1.7146 3.8624 4.2168 11 6 0.5863 4.5377 4.6232 12 6 0.0507 4.3075 5.8859 13 8 -1.0577 4.9803 6.2833 14 6 -1.6573 5.7666 5.3677 15 1 -1.2067 5.9038 4.3958 16 6 -2.8527 6.3994 5.6735 17 7 -3.4017 6.2319 6.8570 18 14 -3.6841 7.4888 4.4040 19 1 -4.0017 6.6867 3.1953 20 1 -4.9380 8.0443 4.9736 21 1 -2.7733 8.6018 4.0343 22 6 0.6516 3.3858 6.7458 23 8 0.1246 3.1632 7.9792 24 6 0.7902 2.2065 8.8060 25 6 1.7799 2.6998 6.3433 26 16 5.0469 1.0719 2.5546 27 6 4.2417 0.8715 0.9887 28 16 4.9315 0.2205 -0.4366 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4027 -0.9314 34 1 4.3142 2.0071 5.3422 35 1 2.1310 4.0468 3.2376 36 1 0.1182 5.2515 3.9616 37 1 -4.2380 6.6742 7.0707 38 1 0.7930 1.2363 8.3093 39 1 1.8170 2.5285 8.9799 40 1 0.2688 2.1253 9.7597 41 1 2.2453 1.9863 7.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002052014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:49 Heat of formation + Delta-G solvation = 26.073298 kcal Electronic energy + Delta-G solvation = -28955.762789 eV Core-core repulsion = 24829.540528 eV Total energy + Delta-G solvation = -4126.222261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.65829 -39.86014 -37.87523 -37.60131 -36.39013 -34.60387 -33.31944 -32.53163 -29.86576 -29.29753 -28.11874 -27.21301 -26.37259 -25.63622 -23.78290 -21.85668 -21.65452 -20.29889 -19.83284 -19.08375 -18.40010 -18.18332 -17.20278 -16.72382 -16.34716 -16.00999 -15.66042 -15.35438 -15.15053 -15.00429 -14.83200 -14.48446 -14.15447 -13.82379 -13.77556 -13.60527 -13.36637 -12.85173 -12.62457 -12.45712 -12.14733 -11.99500 -11.80746 -11.76426 -11.57843 -11.45636 -11.36126 -11.17214 -10.97469 -10.90494 -10.67485 -10.48387 -10.10126 -9.79625 -9.74777 -9.21790 -9.02802 -8.25586 -8.03577 -7.96017 -7.04158 -6.84379 -4.28584 -0.52480 0.50734 0.69779 1.32823 1.56171 1.84371 2.00906 2.19665 2.51754 2.70939 2.94195 2.97420 2.99183 3.67476 3.81483 3.90266 4.23913 4.54022 4.69327 4.71491 4.81558 4.89491 5.02831 5.19250 5.24358 5.36023 5.37900 5.41915 5.42879 5.58363 5.65204 5.66053 5.72634 6.02025 6.09312 6.26961 6.32433 6.32927 6.46236 6.61938 6.77368 6.91148 7.08738 7.31340 7.32571 7.57414 7.93984 8.57646 9.24807 10.29811 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.002744 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.695508 B =10202.520743 C =12012.785393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.181 4.181 3 C 0.118 3.882 4 N -0.504 5.504 5 C 0.534 3.466 6 O -0.439 6.439 7 C -0.327 4.327 8 C 0.142 3.858 9 C -0.198 4.198 10 C 0.007 3.993 11 C -0.232 4.232 12 C 0.157 3.843 13 O -0.133 6.133 14 C -0.381 4.381 15 H 0.102 0.898 16 C 0.042 3.958 17 N -0.832 5.832 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.265 1.265 22 C 0.048 3.952 23 O -0.303 6.303 24 C 0.030 3.970 25 C -0.124 4.124 26 S 0.101 5.899 27 C 0.282 3.718 28 S -0.432 6.432 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.279 0.721 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.874 -8.185 -5.000 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.200 4.200 3 C -0.005 4.005 4 N -0.222 5.222 5 C 0.323 3.677 6 O -0.311 6.311 7 C -0.444 4.444 8 C 0.116 3.884 9 C -0.202 4.202 10 C -0.012 4.012 11 C -0.252 4.252 12 C 0.098 3.902 13 O -0.032 6.032 14 C -0.456 4.456 15 H 0.119 0.881 16 C -0.167 4.167 17 N -0.462 5.462 18 Si 0.771 3.229 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.190 1.190 22 C 0.003 3.997 23 O -0.217 6.217 24 C -0.066 4.066 25 C -0.144 4.144 26 S 0.342 5.658 27 C -0.072 4.072 28 S -0.298 6.298 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.242 -8.388 -4.946 14.873 hybrid contribution -1.745 0.783 -0.297 1.936 sum 9.497 -7.605 -5.243 13.248 Atomic orbital electron populations 1.23996 0.95517 1.02717 0.96649 1.22904 0.96171 0.97683 1.03227 1.21317 0.92220 0.98446 0.88535 1.45459 1.11440 1.51294 1.13983 1.18074 0.89344 0.78782 0.81549 1.91021 1.19733 1.41154 1.79233 1.23462 0.98071 1.22697 1.00186 1.21909 0.94298 0.81767 0.90444 1.17879 1.00303 1.05874 0.96172 1.20818 0.92516 0.92164 0.95670 1.20730 0.99979 1.07516 0.96928 1.18913 0.89000 0.90726 0.91521 1.83957 1.32208 1.48733 1.38293 1.21657 1.04630 1.23557 0.95728 0.88073 1.25519 0.95556 0.97794 0.97845 1.70039 1.17894 1.38523 1.19780 0.85651 0.78705 0.79344 0.79191 1.18941 1.19817 1.18951 1.17916 0.96142 0.99297 0.86371 1.86239 1.52656 1.59013 1.23820 1.22918 0.97587 0.91503 0.94544 1.20689 0.96452 1.01246 0.96041 1.85797 1.13567 1.66905 0.99526 1.28337 0.88292 0.86884 1.03702 1.92907 1.70676 1.48397 1.17841 0.87675 0.87801 0.86589 0.87494 0.86340 0.84106 0.87136 0.84557 0.91075 0.93478 0.93418 0.88915 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 14.32 29.01 0.42 -1.14 16 2 C -0.18 -2.01 9.84 -36.02 -0.35 -2.37 16 3 C 0.12 1.36 5.55 -5.19 -0.03 1.33 16 4 N -0.50 -6.57 2.46 -118.92 -0.29 -6.87 16 5 C 0.53 7.76 6.96 -13.92 -0.10 7.66 16 6 O -0.44 -7.50 12.48 5.17 0.06 -7.44 16 7 C -0.33 -4.18 6.32 -37.00 -0.23 -4.41 16 8 C 0.14 1.72 9.86 -37.01 -0.37 1.35 16 9 C -0.20 -3.12 5.36 -105.06 -0.56 -3.69 16 10 C 0.01 0.13 6.92 -39.10 -0.27 -0.14 16 11 C -0.23 -4.73 9.14 -39.49 -0.36 -5.09 16 12 C 0.16 3.59 6.67 -38.75 -0.26 3.33 16 13 O -0.13 -3.57 9.52 -13.94 -0.13 -3.70 16 14 C -0.38 -9.80 9.48 30.89 0.29 -9.51 16 15 H 0.10 2.37 5.18 -52.48 -0.27 2.10 16 16 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 17 N -0.83 -22.54 13.67 55.48 0.76 -21.78 16 18 Si 0.95 18.71 29.55 -169.99 -5.02 13.69 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 C 0.05 0.96 6.70 -39.13 -0.26 0.70 16 23 O -0.30 -6.04 10.28 -34.22 -0.35 -6.39 16 24 C 0.03 0.40 9.81 101.05 0.99 1.39 16 25 C -0.12 -2.01 8.78 -38.97 -0.34 -2.35 16 26 S 0.10 1.13 23.18 -107.50 -2.49 -1.36 16 27 C 0.28 3.65 7.58 53.61 0.41 4.05 16 28 S -0.43 -6.12 29.73 -107.50 -3.20 -9.32 16 29 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.11 1.22 7.16 -51.93 -0.37 0.85 16 33 H 0.12 1.28 7.07 -51.93 -0.37 0.91 16 34 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.11 1.84 6.24 -52.49 -0.33 1.51 16 36 H 0.14 2.75 5.61 -52.49 -0.29 2.46 16 37 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.12 1.57 6.28 -52.49 -0.33 1.24 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -30.16 382.30 -10.03 -40.19 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.00 Total: 5.14 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.13 Total: -7.92 kcal Atomic # 7 Polarization: -29.11 SS G_CDS: 0.47 Total: -28.65 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.42 Total: -17.53 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -5.69 Total: -10.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.16 -10.03 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002052014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.259 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds