Wall clock time and date at job start Tue Mar 31 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29734 * 125.59557 * 2 1 4 4 N 1.40182 * 108.06965 * 180.25468 * 3 2 1 5 5 C 1.37075 * 126.36132 * 179.69141 * 4 3 2 6 6 H 1.07995 * 120.00070 * 185.93937 * 5 4 3 7 7 C 1.38831 * 119.99866 * 5.93215 * 5 4 3 8 8 N 1.31443 * 120.00175 * 354.07646 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 174.07585 * 7 5 4 10 10 H 1.48500 * 109.47319 * 94.98055 * 9 7 5 11 11 H 1.48499 * 109.47380 * 214.98341 * 9 7 5 12 12 H 1.48506 * 109.47108 * 334.98122 * 9 7 5 13 13 C 1.34938 * 107.27695 * 359.72461 * 4 3 2 14 14 O 1.21721 * 126.27253 * 180.02562 * 13 4 3 15 15 N 1.34801 * 107.44787 * 359.97438 * 13 4 3 16 16 N 1.40106 * 125.80022 * 180.02562 * 15 13 4 17 17 C 1.46498 * 119.99839 * 90.02294 * 16 15 13 18 18 C 1.39070 * 119.99652 * 270.02328 * 16 15 13 19 19 N 1.32389 * 119.71148 * 277.01390 * 18 16 15 20 20 C 1.31961 * 121.63337 * 180.02562 * 19 18 16 21 21 C 1.38046 * 120.88256 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.33743 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.47234 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.47159 * 119.99904 * 22 21 20 25 25 F 1.39899 * 109.47407 * 240.00438 * 22 21 20 26 26 C 1.38847 * 119.33271 * 359.97438 * 21 20 19 27 27 C 1.38420 * 118.49722 * 359.73297 * 26 21 20 28 28 Cl 1.73599 * 120.46457 * 180.28311 * 27 26 21 29 29 H 1.08999 * 109.47308 * 270.21237 * 1 2 3 30 30 H 1.09003 * 109.47238 * 30.21389 * 1 2 3 31 31 H 1.09004 * 109.46908 * 150.20952 * 1 2 3 32 32 H 0.97004 * 119.99870 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47469 * 264.96737 * 17 16 15 34 34 H 1.08998 * 109.47344 * 24.97563 * 17 16 15 35 35 H 1.09003 * 109.47048 * 144.97194 * 17 16 15 36 36 H 1.08005 * 119.56150 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.75457 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0549 0.0000 4 7 3.5988 0.6328 -0.0059 5 6 4.7062 1.4407 -0.0138 6 1 5.6902 1.0072 -0.1146 7 6 4.5627 2.8162 0.1077 8 7 3.3634 3.3540 0.1131 9 14 6.0742 3.9028 0.2636 10 1 6.4546 4.4169 -1.0766 11 1 5.7726 5.0442 1.1643 12 1 7.1971 3.1109 0.8270 13 6 3.5930 -0.7166 -0.0032 14 8 4.5712 -1.4410 -0.0063 15 7 2.3053 -1.1152 0.0047 16 7 1.8584 -2.4430 0.0103 17 6 1.6311 -3.1340 1.2820 18 6 1.6306 -3.1051 -1.1913 19 7 0.4800 -2.9383 -1.8245 20 6 0.2236 -3.5481 -2.9663 21 6 1.1534 -4.3884 -3.5452 22 6 0.8475 -5.0790 -4.8492 23 9 -0.4329 -4.7157 -5.2802 24 9 1.7887 -4.6969 -5.8112 25 9 0.9029 -6.4650 -4.6672 26 6 2.3733 -4.5910 -2.9138 27 6 2.6165 -3.9333 -1.7204 28 17 4.1272 -4.1437 -0.8914 29 1 -0.3634 0.0038 1.0276 30 1 -0.3634 0.8881 -0.5172 31 1 -0.3633 -0.8919 -0.5106 32 1 3.2632 4.3151 0.1984 33 1 2.5198 -3.7060 1.5486 34 1 1.4232 -2.4012 2.0616 35 1 0.7811 -3.8090 1.1818 36 1 -0.7263 -3.3876 -3.4546 37 1 3.1172 -5.2438 -3.3460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004072889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:26 Heat of formation + Delta-G solvation = 0.066108 kcal Electronic energy + Delta-G solvation = -32789.094682 eV Core-core repulsion = 27603.843755 eV Total energy + Delta-G solvation = -5185.250927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.061 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.50475 -48.02817 -47.94855 -41.22916 -40.57570 -36.68040 -36.39573 -35.76897 -33.82013 -33.08348 -31.67115 -31.01363 -30.06287 -27.90494 -27.19530 -25.28128 -24.58597 -23.99056 -22.57497 -20.81110 -20.13195 -18.94222 -18.83666 -18.82369 -18.35132 -17.40636 -17.08004 -16.39117 -15.59111 -15.21121 -15.09862 -14.89715 -14.71450 -14.42388 -14.38361 -14.29398 -14.16237 -14.10653 -14.09172 -14.01421 -13.61813 -13.36009 -12.98141 -12.79224 -12.58360 -12.39131 -12.00641 -11.96212 -11.64777 -11.28353 -11.05286 -10.76859 -10.71450 -10.47332 -10.42407 -10.29294 -10.17812 -9.97029 -9.25729 -9.00716 -8.64090 -8.11669 -7.43128 -6.35652 -4.02225 0.11917 0.61916 1.82674 1.92972 2.30369 3.00497 3.09349 3.19484 3.24520 3.25368 3.30865 3.63381 3.72824 3.98369 4.04267 4.08262 4.23404 4.27582 4.49027 4.65776 4.74973 5.09462 5.18411 5.26237 5.34575 5.53292 5.66948 5.75974 5.79764 6.02035 6.10339 6.46717 6.55614 7.00960 7.10834 7.37611 7.43936 7.90732 8.18038 8.59900 9.01717 9.40149 9.82372 10.65374 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.002917 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.743711 B = 9596.325907 C = 9696.778498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.157 3.843 3 N -0.194 5.194 4 N -0.251 5.251 5 C -0.306 4.306 6 H 0.118 0.882 7 C 0.044 3.956 8 N -0.812 5.812 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.574 3.426 14 O -0.581 6.581 15 N -0.332 5.332 16 N -0.439 5.439 17 C 0.129 3.871 18 C 0.422 3.578 19 N -0.463 5.463 20 C 0.162 3.838 21 C -0.233 4.233 22 C 0.521 3.479 23 F -0.172 7.172 24 F -0.172 7.172 25 F -0.173 7.173 26 C -0.020 4.020 27 C -0.078 4.078 28 Cl 0.006 6.994 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.269 0.731 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.179 0.821 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -16.186 -5.206 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 N -0.021 5.021 4 N -0.058 5.058 5 C -0.434 4.434 6 H 0.136 0.864 7 C -0.167 4.167 8 N -0.444 5.444 9 Si 0.756 3.244 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.190 1.190 13 C 0.277 3.723 14 O -0.460 6.460 15 N -0.150 5.150 16 N -0.256 5.256 17 C -0.013 4.013 18 C 0.194 3.806 19 N -0.174 5.174 20 C 0.002 3.998 21 C -0.237 4.237 22 C 0.466 3.534 23 F -0.153 7.153 24 F -0.153 7.153 25 F -0.155 7.155 26 C -0.047 4.047 27 C -0.111 4.111 28 Cl 0.036 6.964 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.196 0.804 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.207 -14.858 -4.670 18.092 hybrid contribution 1.271 -0.798 -0.526 1.590 sum -7.937 -15.656 -5.195 18.305 Atomic orbital electron populations 1.20002 0.85031 1.03730 1.02538 1.24371 0.96511 0.81532 1.09136 1.77956 0.88148 1.16842 1.19164 1.44271 1.03028 1.02466 1.56042 1.19534 0.83448 0.87348 1.53113 0.86410 1.25427 0.98196 0.97026 0.96078 1.70181 1.21146 1.11905 1.41180 0.85856 0.80705 0.79321 0.78499 1.20028 1.20373 1.18978 1.16539 0.82384 0.84328 0.89066 1.90859 1.34108 1.57733 1.63328 1.44533 1.06026 0.94630 1.69784 1.43890 1.79237 1.01024 1.01445 1.21712 1.00421 0.96281 0.82872 1.17940 0.87052 0.88502 0.87155 1.67842 1.20123 1.21449 1.08014 1.22629 0.98513 0.88844 0.89786 1.21021 0.98942 1.06078 0.97706 1.17896 0.74461 0.76821 0.84207 1.93189 1.39755 1.91461 1.90934 1.93256 1.65049 1.90931 1.66050 1.93237 1.96058 1.30813 1.95355 1.21233 0.95429 0.95888 0.92101 1.22556 0.91828 1.01275 0.95481 1.98483 1.26003 1.95538 1.76413 0.91327 0.90087 0.90047 0.92103 0.92803 0.90435 0.91283 0.80421 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.86 10.37 36.00 0.37 -0.49 16 2 C 0.16 3.41 8.10 -154.09 -1.25 2.16 16 3 N -0.19 -5.07 10.41 32.98 0.34 -4.73 16 4 N -0.25 -7.03 3.70 -15.31 -0.06 -7.09 16 5 C -0.31 -8.70 10.11 -14.99 -0.15 -8.85 16 6 H 0.12 3.31 7.83 -52.49 -0.41 2.90 16 7 C 0.04 1.17 5.49 -17.50 -0.10 1.07 16 8 N -0.81 -22.48 11.86 55.49 0.66 -21.82 16 9 Si 0.93 20.27 29.56 -169.99 -5.02 15.25 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.57 14.97 8.72 -86.75 -0.76 14.22 16 14 O -0.58 -15.76 15.86 5.17 0.08 -15.68 16 15 N -0.33 -7.21 3.06 -13.56 -0.04 -7.25 16 16 N -0.44 -7.57 2.80 -67.17 -0.19 -7.75 16 17 C 0.13 1.74 10.99 59.85 0.66 2.40 16 18 C 0.42 6.62 6.49 -154.94 -1.01 5.61 16 19 N -0.46 -6.43 9.65 -12.40 -0.12 -6.55 16 20 C 0.16 1.76 10.59 -17.57 -0.19 1.57 16 21 C -0.23 -2.46 5.38 -104.47 -0.56 -3.03 16 22 C 0.52 4.93 3.33 36.00 0.12 5.05 16 23 F -0.17 -1.54 15.99 2.25 0.04 -1.51 16 24 F -0.17 -1.80 17.25 2.25 0.04 -1.76 16 25 F -0.17 -1.62 17.25 2.25 0.04 -1.58 16 26 C -0.02 -0.23 9.56 -39.29 -0.38 -0.60 16 27 C -0.08 -1.14 6.36 -39.16 -0.25 -1.39 16 28 Cl 0.01 0.10 26.49 -51.86 -1.37 -1.27 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.18 1.40 7.15 -52.48 -0.38 1.03 16 37 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -33.46 360.07 -6.50 -39.96 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -2.84 Total: -1.39 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: -3.48 Total: 17.73 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.60 Total: -55.18 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.37 Total: -1.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.46 -6.50 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004072889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.030 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds