Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99663 * 2 1 4 4 H 1.48495 * 109.47007 * 239.99749 * 3 2 1 5 5 H 1.48504 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46986 * 119.99997 * 3 2 1 7 7 C 1.37875 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46982 * 179.97438 * 9 7 2 11 11 S 1.81000 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.76198 * 100.00072 * 180.02562 * 11 10 9 13 13 N 1.31422 * 126.38437 * 0.03866 * 12 11 10 14 14 N 1.28512 * 110.08655 * 179.97438 * 13 12 11 15 15 C 1.31276 * 109.95877 * 359.97438 * 14 13 12 16 16 C 1.47826 * 126.46437 * 180.26980 * 15 14 13 17 17 C 1.39585 * 120.15014 * 131.56468 * 16 15 14 18 18 C 1.37940 * 119.86258 * 179.67767 * 17 16 15 19 19 C 1.38387 * 120.17080 * 0.61880 * 18 17 16 20 20 C 1.38310 * 120.30788 * 359.68171 * 19 18 17 21 21 C 1.38102 * 120.13163 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 120.08798 * 180.02562 * 21 20 19 23 23 N 1.36583 * 126.38086 * 180.02562 * 12 11 10 24 24 C 1.46501 * 127.17602 * 0.02765 * 23 12 11 25 25 C 1.54274 * 110.02924 * 58.89784 * 24 23 12 26 26 C 1.54894 * 104.19263 * 217.10711 * 25 24 23 27 27 C 1.54885 * 102.75082 * 37.94018 * 26 25 24 28 28 C 1.53877 * 110.03323 * 301.73213 * 24 23 12 29 29 H 0.96995 * 119.99868 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47508 * 59.99928 * 9 7 2 31 31 H 1.09000 * 109.47294 * 299.99850 * 9 7 2 32 32 H 1.09003 * 109.47054 * 60.00260 * 10 9 7 33 33 H 1.09000 * 109.47296 * 300.00231 * 10 9 7 34 34 H 1.07998 * 120.06379 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.91571 * 180.32284 * 18 17 16 36 36 H 1.08004 * 119.84421 * 179.70238 * 19 18 17 37 37 H 1.08001 * 119.93608 * 180.02562 * 20 19 18 38 38 H 1.09001 * 110.02023 * 180.33348 * 24 23 12 39 39 H 1.09000 * 110.48912 * 335.78073 * 25 24 23 40 40 H 1.08996 * 110.48653 * 98.42737 * 25 24 23 41 41 H 1.09009 * 110.75432 * 279.62443 * 26 25 24 42 42 H 1.08996 * 110.91231 * 156.33536 * 26 25 24 43 43 H 1.09007 * 110.48658 * 203.37991 * 27 26 25 44 44 H 1.09003 * 110.59929 * 80.79271 * 27 26 25 45 45 H 1.09001 * 110.03096 * 238.56666 * 28 24 23 46 46 H 1.09001 * 110.03245 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3405 -5.2295 -0.0002 12 6 2.6903 -6.3620 0.0007 13 7 3.9676 -6.0526 0.0023 14 7 4.6807 -7.1217 0.0031 15 6 3.9029 -8.1792 0.0025 16 6 4.3400 -9.5913 0.0086 17 6 3.7781 -10.4952 0.9117 18 6 4.1856 -11.8131 0.9078 19 6 5.1585 -12.2376 0.0199 20 6 5.7245 -11.3466 -0.8737 21 6 5.3209 -10.0259 -0.8855 22 17 6.0317 -8.9086 -2.0082 23 7 2.6042 -7.7251 0.0000 24 6 1.3834 -8.5350 -0.0021 25 6 0.5310 -8.2027 -1.2443 26 6 -0.9293 -8.2734 -0.7329 27 6 -0.8238 -7.6653 0.6877 28 6 0.5220 -8.1933 1.2263 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8721 -3.6042 0.8906 33 1 2.8721 -3.6042 -0.8894 34 1 3.0224 -10.1645 1.6088 35 1 3.7476 -12.5144 1.6026 36 1 5.4770 -13.2696 0.0247 37 1 6.4831 -11.6845 -1.5643 38 1 1.6386 -9.5947 0.0038 39 1 0.7600 -7.2007 -1.6072 40 1 0.6965 -8.9408 -2.0291 41 1 -1.2727 -9.3069 -0.6862 42 1 -1.5907 -7.6762 -1.3606 43 1 -1.6470 -8.0112 1.3129 44 1 -0.8144 -6.5764 0.6391 45 1 0.3584 -9.0873 1.8280 46 1 1.0124 -7.4252 1.8243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004329359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = 76.117003 kcal Electronic energy + Delta-G solvation = -29351.142387 eV Core-core repulsion = 25393.172323 eV Total energy + Delta-G solvation = -3957.970064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.77173 -39.53738 -38.50432 -36.60415 -33.89722 -33.69455 -32.63347 -31.24638 -30.93197 -29.35601 -29.05781 -28.13579 -25.34352 -24.09552 -23.49040 -22.65053 -21.44490 -21.30689 -20.88249 -20.06630 -18.06104 -17.20918 -16.62480 -16.42308 -16.28050 -16.04247 -15.61491 -15.28911 -14.71214 -14.50783 -14.34533 -14.21020 -13.90332 -13.74165 -13.58326 -13.56952 -12.67673 -12.31374 -12.29932 -12.14837 -11.94451 -11.77937 -11.74505 -11.44409 -11.37449 -11.33500 -11.09023 -11.04613 -10.97427 -10.91256 -10.65891 -10.54641 -10.40813 -10.05832 -10.02239 -9.87119 -9.67241 -9.30140 -9.14735 -8.95564 -8.42756 -7.26505 -6.07619 -4.11273 0.44863 0.73474 1.41619 1.76164 1.90722 2.51124 2.77786 2.87316 3.20651 3.33248 3.36702 3.40958 3.88416 4.07365 4.20729 4.30849 4.43074 4.45746 4.52277 4.74948 4.81628 4.92447 4.96664 5.06018 5.12909 5.15630 5.25886 5.28708 5.35463 5.39350 5.51263 5.60536 5.66803 5.68866 5.78749 5.87271 5.88603 5.92371 5.99022 6.03355 6.05842 6.19858 6.23270 6.24336 6.71012 6.74398 7.47960 7.54646 7.88525 8.25418 8.74561 8.93108 9.52981 11.03262 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002533 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.422059 B =11049.856809 C =12782.922608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.038 3.962 10 C -0.084 4.084 11 S -0.018 6.018 12 C 0.180 3.820 13 N -0.290 5.290 14 N -0.249 5.249 15 C 0.192 3.808 16 C 0.003 3.997 17 C -0.092 4.092 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.111 4.111 21 C -0.004 4.004 22 Cl -0.041 7.041 23 N -0.452 5.452 24 C 0.129 3.871 25 C -0.140 4.140 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.137 4.137 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -29.830 0.095 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.002 4.002 10 C -0.232 4.232 11 S 0.213 5.787 12 C -0.192 4.192 13 N -0.135 5.135 14 N -0.090 5.090 15 C -0.075 4.075 16 C -0.001 4.001 17 C -0.112 4.112 18 C -0.132 4.132 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.033 4.033 22 Cl -0.011 7.011 23 N -0.146 5.146 24 C 0.025 3.975 25 C -0.179 4.179 26 C -0.155 4.155 27 C -0.163 4.163 28 C -0.175 4.175 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.040 -28.931 -0.006 29.002 hybrid contribution 0.828 0.410 -0.060 0.926 sum 2.869 -28.521 -0.066 28.665 Atomic orbital electron populations 1.69950 1.06055 1.27042 1.50131 1.24994 0.94914 0.99314 0.94953 0.86559 0.79513 0.82564 0.78848 1.20066 1.21212 1.20058 1.21029 0.93227 0.89852 1.51664 0.92138 1.18952 0.93322 0.89473 0.98409 1.24058 1.02128 0.91299 1.05752 1.85695 1.03070 0.98500 1.91432 1.27168 1.00588 0.85761 1.05731 1.74825 0.98274 1.19774 1.20642 1.74407 1.25497 0.93674 1.15391 1.22521 0.80879 0.94974 1.09142 1.17297 0.97592 0.87949 0.97229 1.21239 0.99767 0.92989 0.97239 1.21145 0.97534 0.95341 0.99212 1.21266 0.95857 0.99871 0.94619 1.21057 1.00838 0.90823 1.00213 1.21038 0.96542 0.91634 0.94054 1.98429 1.82060 1.61438 1.59215 1.46750 1.06956 1.05339 1.55526 1.22388 0.82174 0.94919 0.97978 1.22856 0.95084 1.04037 0.95914 1.22424 0.95317 1.01118 0.96677 1.22435 0.95767 1.02180 0.95895 1.22570 0.96427 1.02358 0.96190 0.92726 0.95505 0.95492 0.89728 0.89748 0.85004 0.84731 0.84629 0.84255 0.87591 0.89095 0.90669 0.91288 0.90336 0.90941 0.89680 0.90389 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.04 0.95 4.98 -27.89 -0.14 0.82 16 10 C -0.08 -1.80 5.17 37.16 0.19 -1.61 16 11 S -0.02 -0.31 17.51 -107.50 -1.88 -2.20 16 12 C 0.18 3.16 7.02 -88.18 -0.62 2.54 16 13 N -0.29 -5.82 11.59 30.71 0.36 -5.46 16 14 N -0.25 -4.64 11.26 32.59 0.37 -4.27 16 15 C 0.19 2.91 6.84 -153.76 -1.05 1.86 16 16 C 0.00 0.03 5.57 -104.94 -0.58 -0.55 16 17 C -0.09 -0.80 8.31 -39.19 -0.33 -1.12 16 18 C -0.11 -0.71 10.03 -39.64 -0.40 -1.11 16 19 C -0.10 -0.58 10.04 -39.50 -0.40 -0.98 16 20 C -0.11 -0.88 9.82 -39.60 -0.39 -1.27 16 21 C 0.00 -0.04 6.35 -39.10 -0.25 -0.29 16 22 Cl -0.04 -0.53 27.31 -51.86 -1.42 -1.95 16 23 N -0.45 -6.48 2.67 -105.82 -0.28 -6.76 16 24 C 0.13 1.35 3.24 -66.81 -0.22 1.13 16 25 C -0.14 -1.44 6.21 -25.07 -0.16 -1.59 16 26 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 27 C -0.13 -1.17 6.50 -25.07 -0.16 -1.33 16 28 C -0.14 -1.32 5.82 -25.61 -0.15 -1.47 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 33 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 34 H 0.13 1.00 7.61 -52.49 -0.40 0.60 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.14 0.43 8.06 -52.48 -0.42 0.00 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.11 0.90 6.14 -51.93 -0.32 0.58 16 39 H 0.09 1.17 6.13 -51.93 -0.32 0.85 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.98 6.54 -51.93 -0.34 0.64 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.98 7.15 -51.93 -0.37 0.61 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -32.56 398.92 -12.72 -45.28 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.36 Total: -2.43 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -5.22 Total: -19.30 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 1.18 Total: -41.98 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.88 Total: -2.20 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.56 -12.72 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004329359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.392 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds