Wall clock time and date at job start Tue Mar 31 2020 05:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99663 * 2 1 4 4 H 1.48495 * 109.47007 * 239.99749 * 3 2 1 5 5 H 1.48504 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46986 * 119.99997 * 3 2 1 7 7 C 1.37875 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46982 * 179.97438 * 9 7 2 11 11 S 1.81000 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.76198 * 100.00072 * 180.02562 * 11 10 9 13 13 N 1.31422 * 126.38437 * 0.03866 * 12 11 10 14 14 N 1.28512 * 110.08655 * 179.97438 * 13 12 11 15 15 C 1.31276 * 109.95877 * 359.97438 * 14 13 12 16 16 C 1.47826 * 126.46437 * 180.26980 * 15 14 13 17 17 C 1.39585 * 120.15014 * 131.56468 * 16 15 14 18 18 C 1.37940 * 119.86258 * 179.67767 * 17 16 15 19 19 C 1.38387 * 120.17080 * 0.61880 * 18 17 16 20 20 C 1.38310 * 120.30788 * 359.68171 * 19 18 17 21 21 C 1.38102 * 120.13163 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 120.08798 * 180.02562 * 21 20 19 23 23 N 1.36583 * 126.38086 * 180.02562 * 12 11 10 24 24 C 1.46501 * 127.17602 * 0.02765 * 23 12 11 25 25 C 1.54274 * 110.02924 * 58.89784 * 24 23 12 26 26 C 1.54894 * 104.19263 * 217.10711 * 25 24 23 27 27 C 1.54885 * 102.75082 * 37.94018 * 26 25 24 28 28 C 1.53877 * 110.03323 * 301.73213 * 24 23 12 29 29 H 0.96995 * 119.99868 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47508 * 59.99928 * 9 7 2 31 31 H 1.09000 * 109.47294 * 299.99850 * 9 7 2 32 32 H 1.09003 * 109.47054 * 60.00260 * 10 9 7 33 33 H 1.09000 * 109.47296 * 300.00231 * 10 9 7 34 34 H 1.07998 * 120.06379 * 359.97438 * 17 16 15 35 35 H 1.08002 * 119.91571 * 180.32284 * 18 17 16 36 36 H 1.08004 * 119.84421 * 179.70238 * 19 18 17 37 37 H 1.08001 * 119.93608 * 180.02562 * 20 19 18 38 38 H 1.09001 * 110.02023 * 180.33348 * 24 23 12 39 39 H 1.09000 * 110.48912 * 335.78073 * 25 24 23 40 40 H 1.08996 * 110.48653 * 98.42737 * 25 24 23 41 41 H 1.09009 * 110.75432 * 279.62443 * 26 25 24 42 42 H 1.08996 * 110.91231 * 156.33536 * 26 25 24 43 43 H 1.09007 * 110.48658 * 203.37991 * 27 26 25 44 44 H 1.09003 * 110.59929 * 80.79271 * 27 26 25 45 45 H 1.09001 * 110.03096 * 238.56666 * 28 24 23 46 46 H 1.09001 * 110.03245 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3405 -5.2295 -0.0002 12 6 2.6903 -6.3620 0.0007 13 7 3.9676 -6.0526 0.0023 14 7 4.6807 -7.1217 0.0031 15 6 3.9029 -8.1792 0.0025 16 6 4.3400 -9.5913 0.0086 17 6 3.7781 -10.4952 0.9117 18 6 4.1856 -11.8131 0.9078 19 6 5.1585 -12.2376 0.0199 20 6 5.7245 -11.3466 -0.8737 21 6 5.3209 -10.0259 -0.8855 22 17 6.0317 -8.9086 -2.0082 23 7 2.6042 -7.7251 0.0000 24 6 1.3834 -8.5350 -0.0021 25 6 0.5310 -8.2027 -1.2443 26 6 -0.9293 -8.2734 -0.7329 27 6 -0.8238 -7.6653 0.6877 28 6 0.5220 -8.1933 1.2263 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8721 -3.6042 0.8906 33 1 2.8721 -3.6042 -0.8894 34 1 3.0224 -10.1645 1.6088 35 1 3.7476 -12.5144 1.6026 36 1 5.4770 -13.2696 0.0247 37 1 6.4831 -11.6845 -1.5643 38 1 1.6386 -9.5947 0.0038 39 1 0.7600 -7.2007 -1.6072 40 1 0.6965 -8.9408 -2.0291 41 1 -1.2727 -9.3069 -0.6862 42 1 -1.5907 -7.6762 -1.3606 43 1 -1.6470 -8.0112 1.3129 44 1 -0.8144 -6.5764 0.6391 45 1 0.3584 -9.0873 1.8280 46 1 1.0124 -7.4252 1.8243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004329359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:22 Heat of formation + Delta-G solvation = 60.827461 kcal Electronic energy + Delta-G solvation = -29351.805391 eV Core-core repulsion = 25393.172323 eV Total energy + Delta-G solvation = -3958.633068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.99387 -40.20530 -39.36462 -37.45547 -35.83700 -34.90467 -33.54598 -32.98259 -31.86811 -30.43339 -29.82620 -29.01745 -27.38627 -25.08319 -24.45635 -23.51703 -23.15234 -22.32452 -21.66771 -21.13898 -18.98649 -18.70988 -18.04773 -17.61613 -17.32920 -16.85905 -16.54480 -16.42640 -16.18249 -15.61440 -15.50582 -15.42858 -14.97931 -14.81817 -14.54508 -14.43721 -14.11184 -13.77275 -13.51207 -13.20814 -12.98583 -12.93627 -12.60316 -12.56188 -12.54719 -12.49909 -12.31724 -12.19173 -12.16405 -12.03521 -11.94567 -11.84419 -11.71252 -11.56195 -11.50371 -11.27488 -11.10038 -10.97442 -10.61085 -10.02225 -9.77242 -8.67341 -8.25375 -6.37158 -0.31963 0.03608 0.13246 0.62425 1.09453 1.12195 1.39925 1.42507 1.46202 1.51071 1.64119 2.39506 2.53762 2.98957 3.08083 3.25661 3.41956 3.65147 3.73586 3.93386 4.00682 4.08509 4.16281 4.22672 4.27196 4.28998 4.33179 4.37452 4.39479 4.45155 4.55236 4.66564 4.74964 4.78997 4.79457 4.85579 4.95369 5.07225 5.12038 5.19396 5.21952 5.24268 5.33286 5.33843 5.43253 5.45589 5.68259 5.70715 5.74197 6.10337 6.73987 7.31470 7.45697 8.85876 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002533 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.422059 B =11049.856809 C =12782.922608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.049 3.951 10 C -0.083 4.083 11 S 0.029 5.971 12 C 0.163 3.837 13 N -0.332 5.332 14 N -0.294 5.294 15 C 0.215 3.785 16 C -0.033 4.033 17 C -0.091 4.091 18 C -0.100 4.100 19 C -0.079 4.079 20 C -0.112 4.112 21 C -0.023 4.023 22 Cl -0.074 7.074 23 N -0.443 5.443 24 C 0.121 3.879 25 C -0.144 4.144 26 C -0.108 4.108 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.267 0.733 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.114 0.886 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -34.141 1.011 34.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.009 3.991 10 C -0.232 4.232 11 S 0.260 5.740 12 C -0.212 4.212 13 N -0.177 5.177 14 N -0.134 5.134 15 C -0.053 4.053 16 C -0.037 4.037 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.098 4.098 20 C -0.130 4.130 21 C -0.051 4.051 22 Cl -0.045 7.045 23 N -0.136 5.136 24 C 0.019 3.981 25 C -0.182 4.182 26 C -0.146 4.146 27 C -0.166 4.166 28 C -0.172 4.172 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.191 0.809 36 H 0.193 0.807 37 H 0.174 0.826 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.132 0.868 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.590 -33.255 0.909 33.305 hybrid contribution 0.967 1.430 -0.316 1.755 sum 2.557 -31.824 0.594 31.932 Atomic orbital electron populations 1.70057 1.07514 1.28190 1.50670 1.25882 0.95832 1.03005 0.94269 0.85497 0.78347 0.78073 0.79144 1.19413 1.20217 1.19302 1.21426 0.93467 0.91487 1.51984 0.92368 1.18686 0.93300 0.90579 0.96488 1.23620 1.01375 0.93556 1.04635 1.85367 1.01290 0.95427 1.91940 1.26987 0.99871 0.87329 1.06980 1.74704 0.99546 1.21476 1.21993 1.74304 1.26575 0.94380 1.18149 1.23177 0.80629 0.95972 1.05557 1.17475 0.99741 0.86578 0.99860 1.21447 0.99691 0.93541 0.96371 1.21609 0.96577 0.94574 0.99045 1.21782 0.94251 1.01154 0.92566 1.21364 1.01122 0.89571 1.00984 1.21263 0.97201 0.92432 0.94238 1.98415 1.82675 1.62946 1.60510 1.46981 1.08066 1.04240 1.54275 1.22848 0.80874 0.95759 0.98571 1.22890 0.96486 1.02550 0.96320 1.22427 0.93814 1.02798 0.95565 1.22448 0.96525 1.00422 0.97158 1.22608 0.95821 1.03072 0.95724 0.92374 0.97355 0.97199 0.90747 0.90971 0.83915 0.80851 0.80674 0.82620 0.84695 0.92358 0.89179 0.88182 0.90678 0.88683 0.92680 0.86785 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.05 2.61 4.98 29.85 0.15 2.76 16 10 C -0.08 -3.82 5.17 71.98 0.37 -3.45 16 11 S 0.03 1.09 17.51 -56.49 -0.99 0.10 16 12 C 0.16 6.02 7.02 179.50 1.26 7.28 16 13 N -0.33 -14.25 11.59 -56.75 -0.66 -14.90 16 14 N -0.29 -11.58 11.26 -50.80 -0.57 -12.15 16 15 C 0.21 6.63 6.84 136.20 0.93 7.56 16 16 C -0.03 -0.74 5.57 -20.07 -0.11 -0.85 16 17 C -0.09 -1.25 8.31 22.52 0.19 -1.06 16 18 C -0.10 -0.70 10.03 22.23 0.22 -0.47 16 19 C -0.08 -0.53 10.04 22.32 0.22 -0.31 16 20 C -0.11 -1.44 9.82 22.25 0.22 -1.22 16 21 C -0.02 -0.49 6.35 22.58 0.14 -0.34 16 22 Cl -0.07 -2.02 27.31 -2.72 -0.07 -2.10 16 23 N -0.44 -12.83 2.67 -488.70 -1.31 -14.13 16 24 C 0.12 2.33 3.24 45.72 0.15 2.48 16 25 C -0.14 -2.78 6.21 31.67 0.20 -2.59 16 26 C -0.11 -1.58 6.91 31.89 0.22 -1.36 16 27 C -0.13 -2.19 6.50 31.67 0.21 -1.98 16 28 C -0.13 -2.32 5.82 31.32 0.18 -2.14 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.07 3.44 8.14 -2.40 -0.02 3.42 16 34 H 0.14 1.61 7.61 -2.91 -0.02 1.58 16 35 H 0.17 -0.04 8.06 -2.91 -0.02 -0.06 16 36 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 37 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.14 1.83 6.14 -2.39 -0.01 1.82 16 39 H 0.06 1.54 6.13 -2.39 -0.01 1.52 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.05 1.28 6.54 -2.39 -0.02 1.27 16 45 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.05 1.27 7.15 -2.39 -0.02 1.26 16 Total: -1.00 -77.41 398.92 4.96 -72.45 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.00 Total: 5.29 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 5.25 Total: -26.18 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -2.25 Total: -96.61 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -0.99 Total: 0.10 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.10 kcal Total: -77.41 4.96 -72.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004329359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.279 kcal (2) G-P(sol) polarization free energy of solvation -77.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds