Wall clock time and date at job start Tue Mar 31 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.36607 * 120.00061 * 60.49030 * 3 2 1 5 5 C 1.46732 * 119.99668 * 173.29886 * 4 3 2 6 6 C 1.40072 * 120.19059 * 328.71420 * 5 4 3 7 7 C 1.37821 * 119.79732 * 179.76794 * 6 5 4 8 8 C 1.38446 * 120.19865 * 0.53615 * 7 6 5 9 9 N 1.48016 * 119.80832 * 179.71697 * 8 7 6 10 10 O 1.21802 * 119.99929 * 179.97438 * 9 8 7 11 11 O 1.21802 * 119.99997 * 359.97438 * 9 8 7 12 12 C 1.38446 * 120.38702 * 359.69750 * 8 7 6 13 13 C 1.37833 * 120.19441 * 0.04260 * 12 8 7 14 14 C 1.47218 * 119.99654 * 240.48641 * 3 2 1 15 15 O 1.21645 * 120.00292 * 286.69107 * 14 3 2 16 16 N 1.34780 * 119.99979 * 106.69241 * 14 3 2 17 17 C 1.46501 * 119.99744 * 3.60297 * 16 14 3 18 18 C 1.50706 * 109.47146 * 269.99888 * 17 16 14 19 19 H 1.08004 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00044 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00140 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00172 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47156 * 89.99290 * 22 20 18 24 24 H 1.48499 * 109.47136 * 209.99374 * 22 20 18 25 25 H 1.48496 * 109.46880 * 329.99808 * 22 20 18 26 26 C 1.39833 * 120.00131 * 183.60288 * 16 14 3 27 27 C 1.38900 * 120.07333 * 352.00587 * 26 16 14 28 28 C 1.38101 * 119.92458 * 179.97438 * 27 26 16 29 29 C 1.38281 * 120.07660 * 359.97438 * 28 27 26 30 30 C 1.38288 * 120.14818 * 0.04352 * 29 28 27 31 31 C 1.38112 * 120.06571 * 359.96048 * 30 29 28 32 32 H 1.07998 * 120.00347 * 353.29842 * 4 3 2 33 33 H 1.08001 * 120.09978 * 0.02768 * 6 5 4 34 34 H 1.08001 * 119.90061 * 180.23576 * 7 6 5 35 35 H 1.08005 * 119.90718 * 180.02562 * 12 8 7 36 36 H 1.08002 * 120.09953 * 180.02562 * 13 12 8 37 37 H 1.08997 * 109.47543 * 29.99778 * 17 16 14 38 38 H 1.09000 * 109.47098 * 150.00265 * 17 16 14 39 39 H 0.97001 * 120.00221 * 180.02562 * 21 20 18 40 40 H 1.07999 * 120.03432 * 359.69861 * 27 26 16 41 41 H 1.08006 * 119.95905 * 179.97438 * 28 27 26 42 42 H 1.07997 * 119.93047 * 179.97438 * 29 28 27 43 43 H 1.07995 * 119.96655 * 179.97438 * 30 29 28 44 44 H 1.08001 * 120.03243 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2513 -0.5818 -1.0296 5 6 4.7111 -0.4542 -1.1063 6 6 5.3447 0.6937 -0.6135 7 6 6.7167 0.8030 -0.6853 8 6 7.4674 -0.2126 -1.2525 9 7 8.9398 -0.0834 -1.3309 10 8 9.6037 -0.9750 -1.8288 11 8 9.4875 0.9145 -0.8975 12 6 6.8490 -1.3485 -1.7465 13 6 5.4783 -1.4769 -1.6781 14 6 3.3037 0.6291 1.1095 15 8 3.3453 1.8412 1.2025 16 7 3.9314 -0.1387 2.0224 17 6 3.9483 -1.5953 1.8670 18 6 2.7502 -2.1887 2.5626 19 1 2.0464 -1.5450 3.0693 20 6 2.5521 -3.5530 2.5513 21 7 1.5069 -4.0709 3.1587 22 14 3.7691 -4.6663 1.6743 23 1 4.8349 -5.0789 2.6226 24 1 3.0628 -5.8708 1.1688 25 1 4.3772 -3.9341 0.5344 26 6 4.5663 0.4551 3.1176 27 6 4.6961 1.8365 3.1821 28 6 5.3232 2.4198 4.2654 29 6 5.8214 1.6302 5.2855 30 6 5.6942 0.2546 5.2243 31 6 5.0681 -0.3351 4.1437 32 1 2.7172 -1.1362 -1.7870 33 1 4.7602 1.4889 -0.1747 34 1 7.2072 1.6857 -0.3024 35 1 7.4422 -2.1362 -2.1871 36 1 4.9976 -2.3639 -2.0636 37 1 3.9152 -1.8482 0.8073 38 1 4.8604 -1.9972 2.3082 39 1 1.3677 -5.0308 3.1510 40 1 4.3108 2.4535 2.3837 41 1 5.4248 3.4939 4.3159 42 1 6.3118 2.0888 6.1314 43 1 6.0847 -0.3593 6.0225 44 1 4.9695 -1.4095 4.0962 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006229365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:27 Heat of formation + Delta-G solvation = 98.868701 kcal Electronic energy + Delta-G solvation = -34574.560566 eV Core-core repulsion = 30041.423974 eV Total energy + Delta-G solvation = -4533.136592 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.121 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.29184 -41.18543 -39.54725 -38.22700 -36.67208 -36.65260 -35.79142 -34.57366 -32.87708 -31.79081 -31.30117 -30.57600 -29.68574 -28.20164 -27.09916 -24.48412 -23.46279 -23.36474 -22.89970 -22.02400 -21.31612 -20.28562 -19.54734 -18.78961 -17.68019 -17.63276 -17.39412 -17.26435 -16.81637 -16.35495 -15.75241 -15.54801 -15.09291 -14.87889 -14.40198 -14.16544 -14.06087 -13.76540 -13.65658 -13.58061 -13.38889 -13.23696 -13.13118 -12.78456 -12.58155 -12.51355 -12.29752 -12.23134 -11.83623 -11.69634 -11.57828 -11.39943 -11.27522 -11.24372 -11.01821 -10.89222 -10.70401 -10.48363 -10.01373 -9.69677 -9.52588 -9.35426 -8.99659 -8.90142 -8.56860 -7.55639 -6.46345 -4.51217 -0.63571 0.56796 0.70425 1.26053 1.38449 1.53248 1.77794 2.32272 2.79725 2.93911 2.99476 3.01054 3.05210 3.13757 3.51404 3.73495 4.00698 4.10062 4.21294 4.22454 4.29782 4.37551 4.56918 4.65657 4.81744 5.01889 5.22455 5.27727 5.32391 5.37928 5.44576 5.48953 5.51057 5.61816 5.73232 5.81714 5.84466 5.87189 5.97574 6.13488 6.17922 6.28361 6.41909 6.60214 6.76700 6.84090 6.93170 7.05917 7.46289 7.47337 7.52187 7.55601 8.01198 8.11666 8.58600 9.08074 10.65403 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.006442 B = 0.004514 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4345.331544 B = 6201.121690 C = 7219.902499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.262 3.738 3 C -0.031 4.031 4 C -0.025 4.025 5 C -0.019 4.019 6 C -0.114 4.114 7 C -0.045 4.045 8 C -0.041 4.041 9 N 0.030 4.970 10 O -0.164 6.164 11 O -0.160 6.160 12 C -0.056 4.056 13 C -0.092 4.092 14 C 0.568 3.432 15 O -0.523 6.523 16 N -0.508 5.508 17 C 0.195 3.805 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.084 3.916 21 N -0.876 5.876 22 Si 0.863 3.137 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.159 3.841 27 C -0.173 4.173 28 C -0.107 4.107 29 C -0.150 4.150 30 C -0.104 4.104 31 C -0.136 4.136 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.270 0.730 40 H 0.178 0.822 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 6.128 -8.109 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C -0.053 4.053 3 C -0.037 4.037 4 C -0.048 4.048 5 C -0.020 4.020 6 C -0.132 4.132 7 C -0.064 4.064 8 C -0.124 4.124 9 N 0.549 4.451 10 O -0.379 6.379 11 O -0.376 6.376 12 C -0.075 4.075 13 C -0.111 4.111 14 C 0.356 3.644 15 O -0.404 6.404 16 N -0.225 5.225 17 C 0.075 3.925 18 C -0.585 4.585 19 H 0.099 0.901 20 C -0.122 4.122 21 N -0.511 5.511 22 Si 0.688 3.312 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.187 1.187 26 C 0.064 3.936 27 C -0.192 4.192 28 C -0.126 4.126 29 C -0.169 4.169 30 C -0.122 4.122 31 C -0.156 4.156 32 H 0.179 0.821 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.194 0.806 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.404 6.432 -7.997 12.655 hybrid contribution 1.240 -1.135 -0.051 1.682 sum 8.645 5.297 -8.048 12.944 Atomic orbital electron populations 1.81206 1.11404 1.06999 1.06544 1.24705 0.91535 0.94491 0.94610 1.17715 0.86359 1.02534 0.97141 1.22465 0.91498 0.93648 0.97222 1.19358 0.92952 0.94248 0.95407 1.22194 0.93914 0.98968 0.98123 1.20960 0.93652 0.97731 0.94037 1.21313 0.79486 1.00336 1.11215 1.43627 1.03608 0.99886 0.98005 1.94531 1.64146 1.34009 1.45190 1.94547 1.73529 1.20549 1.48962 1.20950 0.95211 0.95592 0.95744 1.21407 0.92088 0.98964 0.98626 1.17780 0.78543 0.86192 0.81850 1.90481 1.61969 1.13454 1.74483 1.45518 1.47292 1.09703 1.20029 1.20238 0.99649 0.73872 0.98757 1.21169 1.08242 0.93053 1.35988 0.90052 1.24822 0.95099 0.97659 0.94604 1.69869 1.27196 1.12854 1.41207 0.87054 0.81845 0.81371 0.80881 1.19464 1.20354 1.18653 1.17960 0.95402 0.92271 0.87938 1.22640 1.01135 0.93788 1.01604 1.21047 0.98117 0.99399 0.94038 1.21069 1.02530 0.93962 0.99354 1.20905 0.99050 0.94778 0.97512 1.21106 1.00241 1.00916 0.93351 0.82090 0.81541 0.82554 0.82540 0.82663 0.93926 0.93897 0.91922 0.80569 0.86355 0.86782 0.86174 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.29 18.54 41.84 0.78 -6.52 16 2 C 0.26 4.49 15.35 -22.47 -0.34 4.15 16 3 C -0.03 -0.47 4.49 -104.92 -0.47 -0.94 16 4 C -0.02 -0.28 8.25 -36.74 -0.30 -0.58 16 5 C -0.02 -0.21 4.50 -105.09 -0.47 -0.68 16 6 C -0.11 -1.31 8.30 -39.05 -0.32 -1.63 16 7 C -0.04 -0.50 9.53 -39.66 -0.38 -0.88 16 8 C -0.04 -0.48 6.86 -79.79 -0.55 -1.02 16 9 N 0.03 0.40 4.45 34.04 0.15 0.55 16 10 O -0.16 -2.27 18.43 -29.46 -0.54 -2.81 16 11 O -0.16 -2.28 18.43 -29.46 -0.54 -2.82 16 12 C -0.06 -0.55 9.53 -39.65 -0.38 -0.93 16 13 C -0.09 -0.85 9.80 -39.05 -0.38 -1.24 16 14 C 0.57 9.54 4.02 -12.61 -0.05 9.49 16 15 O -0.52 -8.95 11.92 5.24 0.06 -8.88 16 16 N -0.51 -9.11 2.60 -116.00 -0.30 -9.41 16 17 C 0.19 3.73 3.19 -5.19 -0.02 3.72 16 18 C -0.55 -13.04 9.78 -34.44 -0.34 -13.37 16 19 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 20 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.88 -23.86 13.96 55.43 0.77 -23.09 16 22 Si 0.86 17.63 27.47 -169.99 -4.67 12.96 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 25 H -0.26 -4.67 6.54 56.52 0.37 -4.30 16 26 C 0.16 2.82 6.48 -83.72 -0.54 2.28 16 27 C -0.17 -2.81 9.03 -39.39 -0.36 -3.17 16 28 C -0.11 -1.53 10.04 -39.62 -0.40 -1.92 16 29 C -0.15 -2.06 10.04 -39.55 -0.40 -2.46 16 30 C -0.10 -1.55 10.04 -39.61 -0.40 -1.94 16 31 C -0.14 -2.36 9.14 -39.39 -0.36 -2.72 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.17 2.06 4.70 -52.49 -0.25 1.81 16 34 H 0.16 1.60 7.59 -52.49 -0.40 1.20 16 35 H 0.16 1.27 7.59 -52.48 -0.40 0.88 16 36 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.04 0.75 3.97 -51.93 -0.21 0.55 16 38 H 0.04 0.82 6.00 -51.93 -0.31 0.51 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.18 2.90 4.56 -56.08 -0.26 2.65 16 41 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.14 2.51 6.27 -52.49 -0.33 2.18 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -29.52 387.75 -8.86 -38.38 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.85 Total: 7.70 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -6.55 Total: -11.89 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 1.40 Total: -38.47 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.02 Total: -14.52 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.67 Total: 12.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.52 -8.86 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006229365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.246 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds