Wall clock time and date at job start Tue Mar 31 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46700 * 2 1 4 4 N 1.46496 * 109.46904 * 180.02562 * 3 2 1 5 5 C 1.33798 * 120.24045 * 269.71809 * 4 3 2 6 6 O 1.21634 * 126.54812 * 359.97438 * 5 4 3 7 7 S 1.77223 * 106.89435 * 179.91072 * 5 4 3 8 8 C 1.77491 * 94.57083 * 0.29459 * 7 5 4 9 9 C 1.35785 * 127.96654 * 179.81178 * 8 7 5 10 10 C 1.46771 * 120.00216 * 352.62600 * 9 8 7 11 11 C 1.40120 * 120.08886 * 158.12753 * 10 9 8 12 12 C 1.37623 * 119.99065 * 179.97438 * 11 10 9 13 13 C 1.39073 * 120.17115 * 359.97438 * 12 11 10 14 14 O 1.35618 * 119.91222 * 180.02562 * 13 12 11 15 15 C 1.34750 * 117.00023 * 6.05848 * 14 13 12 16 16 H 1.08002 * 120.00081 * 354.89560 * 15 14 13 17 17 C 1.38688 * 120.00005 * 174.90670 * 15 14 13 18 18 N 1.31532 * 119.99784 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99933 * 359.97438 * 17 15 14 20 20 H 1.48492 * 109.47044 * 90.00442 * 19 17 15 21 21 H 1.48500 * 109.46876 * 210.00186 * 19 17 15 22 22 H 1.48498 * 109.47319 * 330.00170 * 19 17 15 23 23 C 1.39636 * 120.17470 * 0.02562 * 13 12 11 24 24 O 1.35956 * 119.99987 * 180.02562 * 23 13 12 25 25 C 1.42901 * 117.00233 * 180.02562 * 24 23 13 26 26 C 1.52999 * 109.47178 * 180.02562 * 25 24 23 27 27 C 1.38056 * 120.00932 * 359.74243 * 23 13 12 28 28 C 1.32263 * 120.24565 * 89.99899 * 4 3 2 29 29 O 1.21707 * 122.51775 * 359.95172 * 28 4 3 30 30 H 1.08994 * 109.47157 * 299.99715 * 1 2 3 31 31 H 1.09001 * 109.47142 * 60.00396 * 1 2 3 32 32 H 1.09002 * 109.46764 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47016 * 240.00051 * 2 1 3 34 34 H 1.09001 * 109.47142 * 119.99604 * 2 1 3 35 35 H 1.09001 * 109.47000 * 299.99691 * 3 2 1 36 36 H 1.08988 * 109.47617 * 59.99791 * 3 2 1 37 37 H 1.07998 * 119.99774 * 172.62230 * 9 8 7 38 38 H 1.08003 * 120.00304 * 0.02562 * 11 10 9 39 39 H 1.08002 * 119.91440 * 179.97438 * 12 11 10 40 40 H 0.97000 * 119.99365 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.47104 * 300.00250 * 25 24 23 42 42 H 1.08998 * 109.46788 * 60.00268 * 25 24 23 43 43 H 1.09005 * 109.46879 * 300.00724 * 26 25 24 44 44 H 1.09001 * 109.46993 * 59.99421 * 26 25 24 45 45 H 1.08997 * 109.47540 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.08832 * 180.27316 * 27 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1792 1.4481 1.1550 6 8 3.7003 1.4539 2.2731 7 16 5.9034 1.4436 0.7452 8 6 5.6319 1.4433 -1.0088 9 6 6.5620 1.4439 -1.9981 10 6 7.9830 1.6082 -1.6693 11 6 8.9667 1.1668 -2.5643 12 6 10.2985 1.3223 -2.2542 13 6 10.6718 1.9174 -1.0540 14 8 11.9858 2.0684 -0.7540 15 6 12.8739 1.7372 -1.7117 16 1 12.5321 1.2934 -2.6351 17 6 14.2271 1.9660 -1.5116 18 7 15.0941 1.6422 -2.4462 19 14 14.8183 2.7339 0.0853 20 1 15.1072 1.6629 1.0724 21 1 16.0534 3.5179 -0.1700 22 1 13.7646 3.6315 0.6229 23 6 9.6974 2.3598 -0.1570 24 8 10.0664 2.9415 1.0151 25 6 9.0171 3.3699 1.8854 26 6 9.6217 3.9957 3.1438 27 6 8.3593 2.2118 -0.4627 28 6 4.1706 1.4428 -1.1435 29 8 3.6132 1.4420 -2.2254 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8898 37 1 6.2562 1.3236 -3.0268 38 1 8.6797 0.7054 -3.4977 39 1 11.0556 0.9812 -2.9448 40 1 16.0404 1.8026 -2.3064 41 1 8.3993 4.1079 1.3739 42 1 8.4037 2.5130 2.1641 43 1 10.2399 3.2579 3.6555 44 1 10.2350 4.8526 2.8648 45 1 8.8214 4.3221 3.8079 46 1 7.6046 2.5575 0.2281 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006323865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:41 Heat of formation + Delta-G solvation = -76.525961 kcal Electronic energy + Delta-G solvation = -31583.758883 eV Core-core repulsion = 27146.167808 eV Total energy + Delta-G solvation = -4437.591075 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71447 -40.09013 -38.85401 -38.14046 -36.96533 -36.18502 -34.45797 -33.32281 -32.64470 -31.59561 -29.67899 -29.12135 -27.49831 -25.93630 -24.88466 -23.88245 -23.51646 -22.03226 -21.59022 -20.98756 -19.78012 -18.95535 -18.21649 -18.07572 -17.25518 -16.85774 -16.68016 -15.85935 -15.83770 -15.50282 -15.41063 -15.19135 -14.77944 -14.47355 -14.34272 -14.26999 -14.18875 -13.81677 -13.56154 -13.32391 -12.73749 -12.65570 -12.60752 -12.54938 -12.50048 -12.31197 -11.97075 -11.87211 -11.84188 -11.63404 -11.40716 -11.16938 -11.13668 -10.89502 -10.79915 -10.64321 -10.43471 -10.33833 -10.07812 -9.92330 -9.77218 -9.18741 -8.47845 -8.14928 -7.20023 -6.77980 -4.33814 0.17300 0.72407 1.39623 1.56651 1.88649 2.20063 2.52769 2.82935 3.08175 3.11180 3.28060 3.56882 3.99576 4.00668 4.13344 4.36512 4.50218 4.52905 4.71552 4.78517 4.90295 5.01833 5.05953 5.09480 5.15083 5.25880 5.29565 5.32240 5.37514 5.40188 5.53002 5.60226 5.63824 5.66335 5.72172 5.88351 5.93200 5.94584 5.96158 6.16475 6.22505 6.48908 6.54229 6.67045 6.76283 6.88464 7.13727 7.31816 7.37792 7.60175 7.85989 8.53640 9.14251 10.26199 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002296 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.299903 B =12193.144032 C =13577.285859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.097 3.903 4 N -0.571 5.571 5 C 0.511 3.489 6 O -0.450 6.450 7 S -0.010 6.010 8 C -0.295 4.295 9 C 0.124 3.876 10 C -0.183 4.183 11 C -0.039 4.039 12 C -0.214 4.214 13 C 0.162 3.838 14 O -0.175 6.175 15 C -0.383 4.383 16 H 0.115 0.885 17 C 0.068 3.932 18 N -0.853 5.853 19 Si 0.905 3.095 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.251 1.251 23 C 0.063 3.937 24 O -0.305 6.305 25 C 0.053 3.947 26 C -0.151 4.151 27 C -0.138 4.138 28 C 0.565 3.435 29 O -0.488 6.488 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.147 0.853 40 H 0.287 0.713 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 0.416 4.480 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.027 4.027 4 N -0.315 5.315 5 C 0.193 3.807 6 O -0.324 6.324 7 S 0.228 5.772 8 C -0.410 4.410 9 C 0.099 3.901 10 C -0.185 4.185 11 C -0.058 4.058 12 C -0.233 4.233 13 C 0.105 3.895 14 O -0.076 6.076 15 C -0.457 4.457 16 H 0.132 0.868 17 C -0.140 4.140 18 N -0.486 5.486 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.174 1.174 23 C 0.017 3.983 24 O -0.219 6.219 25 C -0.023 4.023 26 C -0.208 4.208 27 C -0.159 4.159 28 C 0.357 3.643 29 O -0.364 6.364 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.168 0.832 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.379 0.528 5.539 19.203 hybrid contribution -0.973 0.200 -0.285 1.033 sum -19.352 0.728 5.253 20.066 Atomic orbital electron populations 1.21661 0.94213 1.02374 1.02182 1.21835 0.97054 0.95734 1.03083 1.21957 0.76561 0.99156 1.04992 1.46392 1.10459 1.66736 1.07939 1.23010 0.94040 0.77891 0.85746 1.90873 1.72759 1.48094 1.20715 1.86548 1.02743 1.86655 1.01283 1.23139 0.94377 1.27503 0.95991 1.21908 0.90282 0.80649 0.97308 1.18113 0.90839 1.11965 0.97599 1.20961 0.91727 0.95763 0.97314 1.20962 0.96675 1.07383 0.98327 1.18678 0.83510 0.95292 0.92055 1.83577 1.11607 1.71789 1.40601 1.21013 0.86672 1.40572 0.97478 0.86786 1.24590 0.94366 0.95835 0.99164 1.69621 1.03414 1.42559 1.33010 0.86148 0.78888 0.80358 0.81690 1.19383 1.20387 1.17429 1.17905 0.90820 1.01777 0.87777 1.86173 1.34123 1.74361 1.27275 1.22727 0.90095 0.98590 0.90870 1.21749 1.01784 1.01601 0.95644 1.21126 0.93626 1.03563 0.97606 1.17512 0.87690 0.75775 0.83365 1.90856 1.72685 1.46825 1.26008 0.92332 0.92236 0.92031 0.91118 0.91359 0.88365 0.88710 0.83153 0.85804 0.83517 0.90267 0.92515 0.92299 0.91557 0.91607 0.90725 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.24 6.26 -26.73 -0.17 -1.41 16 3 C 0.10 0.96 5.27 -4.04 -0.02 0.94 16 4 N -0.57 -7.02 2.48 -121.08 -0.30 -7.32 16 5 C 0.51 6.78 8.40 53.62 0.45 7.23 16 6 O -0.45 -6.65 17.38 5.25 0.09 -6.56 16 7 S -0.01 -0.13 19.07 -107.50 -2.05 -2.18 16 8 C -0.29 -3.89 6.33 -37.02 -0.23 -4.13 16 9 C 0.12 1.57 9.81 -37.01 -0.36 1.21 16 10 C -0.18 -2.73 5.79 -105.06 -0.61 -3.34 16 11 C -0.04 -0.59 9.78 -39.10 -0.38 -0.97 16 12 C -0.21 -3.96 9.14 -39.50 -0.36 -4.32 16 13 C 0.16 3.41 6.67 -38.75 -0.26 3.15 16 14 O -0.17 -4.25 8.35 -13.93 -0.12 -4.37 16 15 C -0.38 -9.72 9.94 30.90 0.31 -9.41 16 16 H 0.11 2.88 5.42 -52.49 -0.28 2.59 16 17 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 18 N -0.85 -22.33 13.96 55.48 0.77 -21.56 16 19 Si 0.91 20.08 28.62 -169.99 -4.86 15.21 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.25 -5.70 7.11 56.52 0.40 -5.30 16 23 C 0.06 1.19 6.70 -39.13 -0.26 0.93 16 24 O -0.30 -5.74 9.92 -34.21 -0.34 -6.08 16 25 C 0.05 0.74 5.46 37.16 0.20 0.95 16 26 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 27 C -0.14 -2.23 7.58 -38.96 -0.30 -2.53 16 28 C 0.57 7.55 7.61 -13.93 -0.11 7.44 16 29 O -0.49 -7.22 16.85 5.18 0.09 -7.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.92 7.50 -51.93 -0.39 0.53 16 36 H 0.09 0.86 7.69 -51.94 -0.40 0.46 16 37 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 39 H 0.15 2.77 5.62 -52.49 -0.29 2.48 16 40 H 0.29 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.06 0.73 7.64 -51.93 -0.40 0.33 16 42 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.14 2.01 2.95 -30.02 -0.09 1.92 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -28.37 402.43 -7.71 -36.09 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.61 Total: 2.46 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.45 Total: -4.63 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.47 Total: -28.88 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.28 Total: -24.14 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.86 Total: 15.21 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.05 Total: -2.18 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.37 -7.71 -36.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006323865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.440 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds