Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.66727 * 2 1 4 4 C 1.53179 * 109.57217 * 239.69509 * 2 1 3 5 5 C 1.52920 * 109.14431 * 169.76483 * 4 2 1 6 6 C 1.52352 * 108.95755 * 50.92750 * 5 4 2 7 7 C 1.33868 * 123.15253 * 342.64708 * 6 5 4 8 8 S 1.75845 * 111.48552 * 180.02562 * 7 6 5 9 9 C 1.74486 * 92.39055 * 0.02562 * 8 7 6 10 10 N 1.33984 * 129.30836 * 179.97438 * 9 8 7 11 11 C 1.32950 * 117.40366 * 180.02562 * 10 9 8 12 12 S 1.76204 * 118.07960 * 180.02562 * 11 10 9 13 13 C 1.81005 * 99.99942 * 179.97438 * 12 11 10 14 14 C 1.47196 * 109.46918 * 180.02562 * 13 12 11 15 15 N 9.82436 * 153.06725 * 26.20450 * 5 1 2 16 16 N 1.32376 * 123.84400 * 359.97438 * 11 10 9 17 17 C 1.33336 * 122.87689 * 359.97438 * 16 11 10 18 18 S 1.76197 * 122.15717 * 180.02562 * 17 16 11 19 19 C 1.76204 * 99.99764 * 359.97438 * 18 17 16 20 20 H 1.07997 * 119.99963 * 0.02562 * 19 18 17 21 21 C 1.38747 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.31578 * 120.00452 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99989 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46913 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46655 * 120.00261 * 23 21 19 26 26 H 1.48500 * 109.47011 * 240.00216 * 23 21 19 27 27 C 1.40246 * 109.67656 * 0.02562 * 9 8 7 28 28 C 1.51797 * 124.33895 * 0.03798 * 7 6 5 29 29 H 1.09004 * 109.46831 * 180.30362 * 1 2 3 30 30 H 1.08991 * 109.47240 * 300.30335 * 1 2 3 31 31 H 1.09001 * 109.46949 * 60.30446 * 1 2 3 32 32 H 1.09002 * 109.53684 * 49.84231 * 4 2 1 33 33 H 1.09005 * 109.53359 * 289.68253 * 4 2 1 34 34 H 1.09004 * 109.55193 * 170.76859 * 5 4 2 35 35 H 1.09004 * 109.55602 * 290.97093 * 5 4 2 36 36 H 1.09004 * 109.46978 * 300.00083 * 13 12 11 37 37 H 1.08994 * 109.47131 * 60.00124 * 13 12 11 38 38 H 0.96999 * 120.00576 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.56631 * 103.20421 * 28 7 6 40 40 H 1.09005 * 109.56916 * 223.43829 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0432 -0.7283 -1.2461 5 6 3.5507 -0.5048 -1.3724 6 6 4.2146 -0.8461 -0.0443 7 6 3.5402 -0.9413 1.1082 8 16 4.6061 -1.3482 2.4463 9 6 6.0100 -1.3899 1.4111 10 7 7.2871 -1.6488 1.7228 11 6 8.1767 -1.6162 0.7354 12 16 9.8614 -1.9547 1.1253 13 6 10.6045 -1.7836 -0.5163 14 6 12.0526 -2.0317 -0.4276 15 7 13.1699 -2.2259 -0.3596 16 7 7.8709 -1.3453 -0.5238 17 6 6.6281 -1.0771 -0.9252 18 16 6.2423 -0.7197 -2.6068 19 6 7.8472 -0.8478 -3.3228 20 1 8.6971 -1.0922 -2.7029 21 6 8.0189 -0.6359 -4.6832 22 7 6.9834 -0.3387 -5.4386 23 14 9.7203 -0.7724 -5.4424 24 1 10.7071 -1.1153 -4.3870 25 1 9.7156 -1.8354 -6.4793 26 1 10.0903 0.5243 -6.0643 27 6 5.6333 -1.0960 0.0925 28 6 2.0439 -0.7258 1.2450 29 1 -0.3633 -1.0277 0.0054 30 1 -0.3633 0.5185 0.8872 31 1 -0.3633 0.5091 -0.8927 32 1 1.5411 -0.3357 -2.1303 33 1 1.8392 -1.7952 -1.1545 34 1 3.9504 -1.1482 -2.1562 35 1 3.7452 0.5383 -1.6221 36 1 10.1534 -2.5063 -1.1964 37 1 10.4305 -0.7748 -0.8905 38 1 7.1035 -0.1901 -6.3896 39 1 1.5432 -1.6896 1.3366 40 1 1.8412 -0.1235 2.1307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006510562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = 57.871600 kcal Electronic energy + Delta-G solvation = -26243.514008 eV Core-core repulsion = 22593.716247 eV Total energy + Delta-G solvation = -3649.797761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 377.039 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.15947 -38.45051 -36.65990 -34.56687 -33.10660 -33.02046 -30.89784 -30.43004 -29.91682 -26.76315 -26.02139 -25.05213 -23.43741 -22.65224 -21.00257 -19.64062 -18.55864 -18.03007 -17.38444 -16.89519 -16.42596 -15.71534 -15.30053 -15.22421 -15.10482 -14.78624 -14.59976 -14.31478 -14.08338 -13.53664 -13.34319 -13.19628 -12.95280 -12.83718 -12.73086 -12.38844 -12.15569 -12.04137 -11.74769 -11.56254 -11.49396 -11.36294 -11.27339 -11.23490 -10.91540 -10.74334 -10.66997 -10.53199 -10.41662 -10.32325 -10.16016 -9.54716 -9.05426 -8.94093 -8.73232 -7.95761 -7.67034 -7.03845 -6.80939 -4.54091 0.73199 1.00514 1.35123 1.56982 1.96305 2.13681 2.38902 2.61582 2.69403 2.96800 3.03822 3.05119 3.09549 3.69781 3.80168 3.95364 4.56759 4.63700 4.67115 4.76015 4.79463 4.96355 5.06366 5.16943 5.21427 5.28759 5.42970 5.49210 5.54602 5.58223 5.58766 5.62907 5.70425 5.88365 5.94905 6.06502 6.13821 6.21295 6.28311 6.40180 6.45064 6.74781 7.20483 7.24073 7.40603 8.03889 8.29351 8.71140 10.25039 Molecular weight = 377.04amu Principal moments of inertia in cm(-1) A = 0.008464 B = 0.003893 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.256282 B = 7189.797019 C =10436.716254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.068 4.068 6 C -0.040 4.040 7 C -0.205 4.205 8 S 0.134 5.866 9 C 0.109 3.891 10 N -0.501 5.501 11 C 0.323 3.677 12 S 0.027 5.973 13 C -0.025 4.025 14 C 0.226 3.774 15 N -0.416 5.416 16 N -0.545 5.545 17 C 0.187 3.813 18 S 0.210 5.790 19 C -0.557 4.557 20 H 0.110 0.890 21 C 0.082 3.918 22 N -0.862 5.862 23 Si 0.925 3.075 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.193 4.193 28 C -0.033 4.033 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.279 0.721 39 H 0.076 0.924 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.255 0.250 8.000 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.107 4.107 6 C -0.052 4.052 7 C -0.323 4.323 8 S 0.394 5.606 9 C -0.146 4.146 10 N -0.228 5.228 11 C -0.063 4.063 12 S 0.259 5.741 13 C -0.176 4.176 14 C -0.093 4.093 15 N -0.095 5.095 16 N -0.273 5.273 17 C -0.074 4.074 18 S 0.461 5.539 19 C -0.705 4.705 20 H 0.128 0.872 21 C -0.130 4.130 22 N -0.495 5.495 23 Si 0.749 3.251 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.217 4.217 28 C -0.072 4.072 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.390 -0.417 10.014 13.071 hybrid contribution 0.599 0.392 -2.738 2.830 sum -7.791 -0.024 7.276 10.660 Atomic orbital electron populations 1.21817 0.94847 1.01862 1.01746 1.21166 0.95268 1.00017 0.94474 0.90570 1.21618 0.94963 1.00831 0.97535 1.20758 0.94081 1.03102 0.92806 1.20058 0.90122 0.99402 0.95630 1.24290 0.99393 1.13224 0.95344 1.83604 0.93729 1.74307 1.08924 1.23477 0.97096 0.99173 0.94858 1.69750 0.98102 1.23720 1.31259 1.24501 0.98682 0.95052 0.88067 1.85681 0.93426 1.87073 1.07877 1.20916 0.84921 1.10719 1.01074 1.28019 0.93914 0.93393 0.93981 1.81214 1.11970 1.08842 1.07484 1.68555 1.21295 1.21750 1.15663 1.25050 0.88773 0.91820 1.01729 1.83663 1.13555 1.70241 0.86429 1.23713 0.95487 1.55050 0.96258 0.87186 1.25163 0.99136 0.92758 0.95907 1.69905 1.30391 1.41875 1.07294 0.85984 0.81263 0.78500 0.79312 1.18651 1.20041 1.20033 1.19960 0.94582 1.12982 0.94135 1.20306 0.87600 1.00819 0.98506 0.92602 0.92754 0.92371 0.91029 0.91595 0.88944 0.89559 0.83824 0.83821 0.91081 0.90537 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.18 37.16 0.34 -0.76 16 2 C -0.09 -0.86 2.72 -90.53 -0.25 -1.11 16 3 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 4 C -0.11 -1.22 5.21 -26.68 -0.14 -1.36 16 5 C -0.07 -0.96 4.69 -27.10 -0.13 -1.09 16 6 C -0.04 -0.63 5.93 -102.79 -0.61 -1.24 16 7 C -0.20 -2.85 6.30 -35.30 -0.22 -3.07 16 8 S 0.13 1.98 23.16 -107.50 -2.49 -0.51 16 9 C 0.11 2.02 7.49 -15.86 -0.12 1.91 16 10 N -0.50 -9.73 10.67 -12.25 -0.13 -9.86 16 11 C 0.32 6.09 7.80 -90.65 -0.71 5.38 16 12 S 0.03 0.41 22.18 -107.50 -2.38 -1.97 16 13 C -0.03 -0.36 5.24 34.37 0.18 -0.18 16 14 C 0.23 3.31 15.43 -20.76 -0.32 2.99 16 15 N -0.42 -6.82 18.54 42.16 0.78 -6.04 16 16 N -0.55 -10.95 7.21 -11.42 -0.08 -11.03 16 17 C 0.19 3.84 7.16 -15.33 -0.11 3.73 16 18 S 0.21 4.46 18.22 -107.50 -1.96 2.51 16 19 C -0.56 -13.07 9.30 30.92 0.29 -12.78 16 20 H 0.11 2.51 6.66 -52.49 -0.35 2.16 16 21 C 0.08 1.93 5.49 -17.47 -0.10 1.83 16 22 N -0.86 -21.16 13.22 55.49 0.73 -20.43 16 23 Si 0.92 18.54 29.55 -169.99 -5.02 13.51 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 C -0.19 -3.66 6.00 -105.02 -0.63 -4.29 16 28 C -0.03 -0.34 5.53 -27.34 -0.15 -0.49 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.09 1.44 6.07 -51.38 -0.31 1.13 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.14 2.02 8.08 -51.91 -0.42 1.60 16 37 H 0.14 2.02 8.08 -51.92 -0.42 1.60 16 38 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 39 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -26.86 377.93 -11.96 -38.82 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.43 Total: -0.15 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.67 Total: -10.53 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 1.30 Total: -47.37 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -6.83 Total: 0.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.86 -11.96 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006510562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.691 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds