Wall clock time and date at job start Tue Mar 31 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.56653 * 2 1 4 4 C 1.53181 * 109.65657 * 120.28221 * 2 1 3 5 5 C 1.52952 * 109.10407 * 190.28309 * 4 2 1 6 6 C 1.52318 * 108.87097 * 309.26912 * 5 4 2 7 7 C 1.33446 * 123.38116 * 17.15200 * 6 5 4 8 8 S 1.75590 * 111.37801 * 180.02562 * 7 6 5 9 9 C 1.75538 * 92.46997 * 359.94642 * 8 7 6 10 10 N 1.33978 * 131.15516 * 180.02562 * 9 8 7 11 11 C 1.32083 * 120.92655 * 180.02562 * 10 9 8 12 12 S 1.76198 * 118.99153 * 180.02562 * 11 10 9 13 13 C 1.81002 * 100.00092 * 179.97438 * 12 11 10 14 14 C 1.47201 * 109.47239 * 180.02562 * 13 12 11 15 15 N 9.87980 * 152.89203 * 334.51266 * 5 1 2 16 16 N 1.32688 * 122.01803 * 0.30856 * 11 10 9 17 17 C 1.32522 * 121.09188 * 359.44120 * 16 11 10 18 18 S 1.76205 * 120.51707 * 180.25081 * 17 16 11 19 19 C 1.76199 * 100.00378 * 0.22069 * 18 17 16 20 20 H 1.08005 * 119.99520 * 0.02562 * 19 18 17 21 21 C 1.38749 * 119.99946 * 180.02562 * 19 18 17 22 22 N 1.31580 * 119.99688 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00124 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46931 * 90.00172 * 23 21 19 25 25 H 1.48504 * 109.47075 * 209.99931 * 23 21 19 26 26 H 1.48493 * 109.47162 * 329.99988 * 23 21 19 27 27 C 1.39383 * 109.60864 * 0.07584 * 9 8 7 28 28 C 1.51885 * 124.32793 * 0.02562 * 7 6 5 29 29 H 1.08991 * 109.47666 * 180.22141 * 1 2 3 30 30 H 1.09001 * 109.46875 * 300.22199 * 1 2 3 31 31 H 1.09003 * 109.47162 * 60.22003 * 1 2 3 32 32 H 1.08998 * 109.53149 * 310.17547 * 4 2 1 33 33 H 1.09005 * 109.52965 * 70.39717 * 4 2 1 34 34 H 1.08996 * 109.57014 * 69.06942 * 5 4 2 35 35 H 1.09007 * 109.56992 * 189.31291 * 5 4 2 36 36 H 1.09002 * 109.47154 * 300.00093 * 13 12 11 37 37 H 1.09001 * 109.47171 * 60.00111 * 13 12 11 38 38 H 0.96993 * 119.99804 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.58081 * 136.47993 * 28 7 6 40 40 H 1.08999 * 109.58369 * 256.88491 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0452 -0.7274 1.2457 5 6 3.5528 -0.5011 1.3698 6 6 4.2127 -0.8373 0.0388 7 6 3.5406 -0.9349 -1.1100 8 16 4.6090 -1.3358 -2.4445 9 6 6.0215 -1.3706 -1.4028 10 7 7.3104 -1.6173 -1.6728 11 6 8.2215 -1.5903 -0.7169 12 16 9.9021 -1.9219 -1.1294 13 6 10.6656 -1.7526 0.5030 14 6 12.1136 -1.9942 0.3948 15 7 13.2317 -2.1764 0.3105 16 7 7.9091 -1.3264 0.5454 17 6 6.6594 -1.0659 0.9010 18 16 6.2626 -0.7110 2.5807 19 6 7.8638 -0.8329 3.3058 20 1 8.7184 -1.0725 2.6904 21 6 8.0268 -0.6210 4.6673 22 7 9.2225 -0.7125 5.2088 23 14 6.5486 -0.2072 5.7318 24 1 5.9462 -1.4612 6.2513 25 1 6.9807 0.6430 6.8701 26 1 5.5438 0.5255 4.9202 27 6 5.6435 -1.0826 -0.0925 28 6 2.0424 -0.7258 -1.2462 29 1 -0.3634 -1.0275 0.0040 30 1 -0.3633 0.5173 0.8880 31 1 -0.3633 0.5104 -0.8920 32 1 1.5437 -0.3351 2.1304 33 1 1.8432 -1.7947 1.1542 34 1 3.7461 0.5421 1.6197 35 1 3.9554 -1.1446 2.1522 36 1 10.4930 -0.7453 0.8821 37 1 10.2259 -2.4786 1.1868 38 1 9.3365 -0.5640 6.1605 39 1 1.8367 -0.1230 -2.1307 40 1 1.5454 -1.6917 -1.3363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006510563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:38 Heat of formation + Delta-G solvation = 65.038783 kcal Electronic energy + Delta-G solvation = -26266.974389 eV Core-core repulsion = 22617.487420 eV Total energy + Delta-G solvation = -3649.486968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 377.039 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36707 -38.60474 -36.55640 -34.71862 -33.16525 -32.90657 -31.02154 -30.50836 -29.96196 -26.86388 -26.13017 -25.12316 -23.58864 -22.80618 -21.11842 -19.72744 -18.65393 -18.04812 -17.37603 -16.94705 -16.49029 -15.72147 -15.45847 -15.31885 -15.13046 -14.70207 -14.60554 -14.43001 -14.19855 -13.64092 -13.37073 -13.21292 -13.00905 -12.96353 -12.71552 -12.40959 -12.21845 -12.03155 -11.95453 -11.81467 -11.61484 -11.45172 -11.31799 -11.25089 -10.98901 -10.83576 -10.70512 -10.53626 -10.47114 -10.35025 -10.25432 -9.45976 -9.17137 -9.05672 -8.73851 -8.06860 -7.78056 -7.23080 -6.71255 -4.49174 0.63934 0.96787 1.27066 1.44415 1.92144 2.01421 2.26945 2.35411 2.80079 2.95192 3.01368 3.09683 3.14088 3.84161 3.88278 3.89162 4.08895 4.45739 4.65344 4.68818 4.71397 4.84805 4.88214 5.04667 5.18726 5.28007 5.30928 5.37177 5.43565 5.48609 5.53173 5.59809 5.71244 5.76372 5.85635 5.95601 6.02523 6.06766 6.17357 6.28862 6.33882 6.61008 7.17883 7.51017 7.54251 8.19862 8.35161 8.68038 10.35913 Molecular weight = 377.04amu Principal moments of inertia in cm(-1) A = 0.007650 B = 0.004219 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3659.297537 B = 6635.367374 C =10234.165735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.069 4.069 6 C -0.042 4.042 7 C -0.196 4.196 8 S 0.135 5.865 9 C 0.122 3.878 10 N -0.514 5.514 11 C 0.328 3.672 12 S 0.035 5.965 13 C -0.023 4.023 14 C 0.228 3.772 15 N -0.417 5.417 16 N -0.525 5.525 17 C 0.212 3.788 18 S 0.097 5.903 19 C -0.542 4.542 20 H 0.126 0.874 21 C 0.103 3.897 22 N -0.848 5.848 23 Si 0.840 3.160 24 H -0.260 1.260 25 H -0.263 1.263 26 H -0.237 1.237 27 C -0.187 4.187 28 C -0.034 4.034 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.278 0.722 39 H 0.075 0.925 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.032 0.920 -8.606 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.109 4.109 6 C -0.055 4.055 7 C -0.314 4.314 8 S 0.396 5.604 9 C -0.132 4.132 10 N -0.240 5.240 11 C -0.057 4.057 12 S 0.268 5.732 13 C -0.174 4.174 14 C -0.091 4.091 15 N -0.095 5.095 16 N -0.251 5.251 17 C -0.052 4.052 18 S 0.346 5.654 19 C -0.690 4.690 20 H 0.144 0.856 21 C -0.110 4.110 22 N -0.480 5.480 23 Si 0.664 3.336 24 H -0.185 1.185 25 H -0.188 1.188 26 H -0.161 1.161 27 C -0.210 4.210 28 C -0.073 4.073 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.952 0.234 -10.656 16.774 hybrid contribution -0.718 0.620 2.970 3.118 sum -13.670 0.854 -7.686 15.706 Atomic orbital electron populations 1.21816 0.94758 1.01922 1.01804 1.21178 0.95365 1.00018 0.94395 0.90530 1.21638 0.94857 1.00945 0.97613 1.20772 0.94182 1.03045 0.92884 1.20079 0.89779 0.99905 0.95711 1.24192 0.99523 1.12272 0.95419 1.83795 0.93318 1.74732 1.08569 1.23264 0.96266 0.98992 0.94681 1.68026 0.98533 1.22778 1.34631 1.24427 0.98716 0.94950 0.87613 1.85674 0.92199 1.86933 1.08430 1.20922 0.84970 1.11102 1.00427 1.27940 0.93846 0.93351 0.93936 1.81203 1.11917 1.08931 1.07487 1.69010 1.19032 1.20728 1.16349 1.23874 0.89181 0.92056 1.00087 1.83140 1.15813 1.74158 0.92280 1.23004 0.93513 1.55308 0.97179 0.85633 1.24815 0.96169 0.93151 0.96853 1.69860 1.21495 1.43390 1.13294 0.87049 0.83403 0.80606 0.82573 1.18480 1.18777 1.16132 1.20022 0.94448 1.12164 0.94407 1.20361 0.87340 1.00993 0.98612 0.92558 0.92387 0.92661 0.91064 0.91468 0.89593 0.89091 0.83625 0.83607 0.91123 0.90612 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.18 37.15 0.34 -0.65 16 2 C -0.09 -0.79 2.71 -90.50 -0.25 -1.04 16 3 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 4 C -0.11 -1.13 5.22 -26.66 -0.14 -1.27 16 5 C -0.07 -0.91 4.71 -27.10 -0.13 -1.04 16 6 C -0.04 -0.64 5.93 -102.49 -0.61 -1.24 16 7 C -0.20 -2.56 6.29 -35.40 -0.22 -2.79 16 8 S 0.14 1.89 23.18 -107.50 -2.49 -0.60 16 9 C 0.12 2.20 7.67 -16.19 -0.12 2.07 16 10 N -0.51 -9.81 10.43 -12.33 -0.13 -9.94 16 11 C 0.33 6.16 7.85 -91.13 -0.72 5.45 16 12 S 0.03 0.54 22.20 -107.50 -2.39 -1.85 16 13 C -0.02 -0.34 5.28 34.37 0.18 -0.16 16 14 C 0.23 3.53 15.43 -20.76 -0.32 3.21 16 15 N -0.42 -7.17 18.54 42.15 0.78 -6.38 16 16 N -0.53 -10.63 7.24 -11.77 -0.09 -10.72 16 17 C 0.21 4.28 7.07 -15.77 -0.11 4.17 16 18 S 0.10 1.98 16.19 -107.50 -1.74 0.24 16 19 C -0.54 -13.12 9.81 30.92 0.30 -12.82 16 20 H 0.13 3.21 6.81 -52.48 -0.36 2.85 16 21 C 0.10 2.52 5.50 -17.47 -0.10 2.42 16 22 N -0.85 -22.03 13.97 55.49 0.77 -21.26 16 23 Si 0.84 17.42 27.74 -169.99 -4.71 12.70 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.24 -4.58 6.74 56.52 0.38 -4.20 16 27 C -0.19 -3.43 6.03 -104.98 -0.63 -4.06 16 28 C -0.03 -0.32 5.54 -27.27 -0.15 -0.47 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.30 6.12 -51.72 -0.32 0.99 16 36 H 0.15 2.23 8.11 -51.92 -0.42 1.81 16 37 H 0.15 2.24 8.10 -51.92 -0.42 1.82 16 38 H 0.28 6.73 8.31 -40.82 -0.34 6.40 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -27.49 375.25 -11.47 -38.96 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.47 Total: 1.39 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.67 Total: -8.21 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 1.34 Total: -48.30 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -4.71 Total: 12.70 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -6.62 Total: -2.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.49 -11.47 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006510563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.000 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds