Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86791 * 120.00771 * 2 1 4 4 H 1.48504 * 109.47408 * 270.00037 * 3 2 1 5 5 H 1.48503 * 109.47028 * 30.00017 * 3 2 1 6 6 H 1.48501 * 109.47622 * 149.99908 * 3 2 1 7 7 C 1.39911 * 119.99251 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99744 * 175.55905 * 7 2 1 9 9 C 1.41148 * 120.00216 * 355.56145 * 7 2 1 10 10 C 1.40870 * 120.16294 * 214.78044 * 9 7 2 11 11 C 1.36380 * 119.83094 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.16257 * 359.97438 * 11 10 9 13 13 N 1.39235 * 119.82931 * 179.97438 * 12 11 10 14 14 C 1.34781 * 120.00336 * 35.28757 * 13 12 11 15 15 O 1.21282 * 119.99745 * 355.70886 * 14 13 12 16 16 C 1.50694 * 120.00065 * 175.70789 * 14 13 12 17 17 O 1.45202 * 109.46943 * 180.02562 * 16 14 13 18 18 C 1.34678 * 116.99748 * 180.02562 * 17 16 14 19 19 O 1.21414 * 120.00150 * 359.97438 * 18 17 16 20 20 C 1.48134 * 119.99785 * 179.97438 * 18 17 16 21 21 C 1.40599 * 119.75266 * 179.97438 * 20 18 17 22 22 N 1.31260 * 120.57177 * 179.97438 * 21 20 18 23 23 C 1.33789 * 119.80553 * 0.02562 * 22 21 20 24 24 C 1.40538 * 121.00130 * 179.97438 * 23 22 21 25 25 C 1.36088 * 119.75638 * 180.02562 * 24 23 22 26 26 C 1.39486 * 121.01612 * 0.02562 * 25 24 23 27 27 C 1.35987 * 120.98316 * 0.02562 * 26 25 24 28 28 C 1.40834 * 119.70018 * 359.97438 * 27 26 25 29 29 N 1.32199 * 119.75325 * 0.02562 * 20 18 17 30 30 C 1.39478 * 120.33584 * 0.25324 * 12 11 10 31 31 C 1.36373 * 120.16907 * 359.48611 * 30 12 11 32 32 H 0.97006 * 119.99591 * 359.97438 * 1 2 3 33 33 H 1.08005 * 120.08955 * 359.97438 * 10 9 7 34 34 H 1.07992 * 119.91809 * 179.97438 * 11 10 9 35 35 H 0.97003 * 119.99950 * 215.28625 * 13 12 11 36 36 H 1.09000 * 109.47577 * 60.00366 * 16 14 13 37 37 H 1.09003 * 109.47509 * 300.00202 * 16 14 13 38 38 H 1.08002 * 119.71488 * 0.02614 * 21 20 18 39 39 H 1.08004 * 120.12625 * 0.02562 * 24 23 22 40 40 H 1.07994 * 119.49338 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.50331 * 179.71768 * 26 25 24 42 42 H 1.07994 * 120.14639 * 179.97438 * 27 26 25 43 43 H 1.08003 * 119.91407 * 179.74205 * 30 12 11 44 44 H 1.08000 * 120.09190 * 180.25295 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6175 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4399 0.7000 7 6 2.0081 -1.2118 0.0005 8 1 3.0857 -1.2133 -0.0719 9 6 1.3054 -2.4322 0.0957 10 6 1.8646 -3.5180 0.7976 11 6 1.1800 -4.6943 0.8848 12 6 -0.0711 -4.8235 0.2817 13 7 -0.7637 -6.0278 0.3746 14 6 -0.6812 -6.7677 1.4981 15 8 0.0567 -6.4246 2.3974 16 6 -1.5059 -8.0214 1.6369 17 8 -1.2419 -8.6340 2.9267 18 6 -1.9040 -9.7720 3.2099 19 8 -2.6807 -10.2396 2.4023 20 6 -1.6846 -10.4533 4.5068 21 6 -2.3789 -11.6409 4.7974 22 7 -2.1964 -12.2581 5.9414 23 6 -1.3431 -11.7542 6.8402 24 6 -1.1289 -12.3939 8.0730 25 6 -0.2555 -11.8588 8.9689 26 6 0.4342 -10.6802 8.6843 27 6 0.2534 -10.0312 7.5031 28 6 -0.6421 -10.5535 6.5499 29 7 -0.8381 -9.9397 5.3828 30 6 -0.6291 -3.7544 -0.4190 31 6 0.0412 -2.5703 -0.5103 32 1 -0.4850 0.8401 0.0004 33 1 2.8334 -3.4196 1.2648 34 1 1.6075 -5.5278 1.4222 35 1 -1.3057 -6.3342 -0.3692 36 1 -1.2427 -8.7193 0.8421 37 1 -2.5641 -7.7702 1.5642 38 1 -3.0678 -12.0493 4.0727 39 1 -1.6555 -13.3070 8.3086 40 1 -0.0938 -12.3542 9.9148 41 1 1.1182 -10.2745 9.4151 42 1 0.7941 -9.1193 7.2970 43 1 -1.5964 -3.8632 -0.8869 44 1 -0.3938 -1.7419 -1.0497 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006880182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -11.366252 kcal Electronic energy + Delta-G solvation = -31177.327281 eV Core-core repulsion = 26639.410543 eV Total energy + Delta-G solvation = -4537.916738 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.121 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.06686 -40.70023 -39.57316 -37.99930 -37.35715 -36.57143 -35.43667 -34.48276 -32.99802 -31.71204 -31.16531 -29.88902 -29.51574 -28.26101 -26.49280 -25.23958 -24.67861 -22.79151 -22.38125 -21.62840 -20.85302 -19.85618 -19.34102 -19.00231 -18.05055 -17.48504 -17.34686 -17.00846 -16.80677 -16.13799 -15.92330 -15.66304 -15.45807 -15.17686 -14.90920 -14.76605 -14.34430 -14.04912 -13.91551 -13.41845 -12.94247 -12.81068 -12.66172 -12.45167 -12.44009 -12.30907 -12.24505 -12.21549 -12.14353 -11.73925 -11.40433 -11.30333 -11.18383 -11.09361 -10.92902 -10.74500 -10.06250 -9.73425 -9.58736 -9.52742 -9.48514 -9.17218 -9.14923 -8.92718 -7.57601 -6.91155 -6.64230 -4.36879 -0.58835 -0.15305 1.26003 1.73808 1.89084 2.45613 2.48870 2.95418 3.06541 3.08968 3.12608 3.19121 3.30861 3.47361 3.49490 3.58196 3.71855 3.96565 4.19828 4.27659 4.42435 4.56800 4.66546 4.66901 4.75380 4.85300 4.93105 4.97263 5.24332 5.32946 5.52811 5.57311 5.62474 5.78659 5.87433 6.07773 6.16285 6.41205 6.57636 6.68639 6.86551 7.01531 7.03708 7.15982 7.25335 7.30722 7.61033 7.68600 7.82311 8.03404 8.18340 8.28708 8.56766 8.65524 8.90353 8.96447 10.26751 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.001542 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.452818 B =18151.547913 C =19710.519538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.645 5.645 14 C 0.498 3.502 15 O -0.504 6.504 16 C 0.049 3.951 17 O -0.302 6.302 18 C 0.529 3.471 19 O -0.491 6.491 20 C 0.067 3.933 21 C 0.134 3.866 22 N -0.424 5.424 23 C 0.101 3.899 24 C -0.095 4.095 25 C -0.079 4.079 26 C -0.104 4.104 27 C -0.065 4.065 28 C 0.072 3.928 29 N -0.354 5.354 30 C -0.118 4.118 31 C -0.142 4.142 32 H 0.278 0.722 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.398 0.602 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.191 0.809 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.092 0.908 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -22.647 12.298 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.091 4.091 13 N -0.290 5.290 14 C 0.283 3.717 15 O -0.378 6.378 16 C -0.029 4.029 17 O -0.215 6.215 18 C 0.371 3.629 19 O -0.378 6.378 20 C -0.087 4.087 21 C -0.040 4.040 22 N -0.137 5.137 23 C -0.024 4.024 24 C -0.114 4.114 25 C -0.099 4.099 26 C -0.124 4.124 27 C -0.084 4.084 28 C -0.055 4.055 29 N -0.072 5.072 30 C -0.138 4.138 31 C -0.162 4.162 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.232 0.768 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.208 0.792 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.167 0.833 43 H 0.110 0.890 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.742 -22.353 12.848 26.215 hybrid contribution -0.173 0.687 -0.496 0.865 sum -4.915 -21.667 12.352 25.420 Atomic orbital electron populations 1.69759 1.07303 1.28764 1.37949 1.25891 0.94955 1.01216 0.92533 0.86184 0.80249 0.80424 0.79056 1.19503 1.20290 1.18706 1.19514 0.94778 0.90210 1.44539 0.90550 1.17746 0.92293 0.92017 0.88140 1.20810 1.01277 0.94898 1.05521 1.20414 0.92725 0.97927 0.99344 1.17218 0.94218 0.85527 1.12147 1.42766 1.49163 1.21421 1.15658 1.19865 0.84030 0.84701 0.83144 1.90759 1.37728 1.69829 1.39491 1.22872 1.01502 0.94660 0.83850 1.86730 1.61822 1.36215 1.36758 1.20510 0.77800 0.79221 0.85412 1.90874 1.34216 1.65041 1.47649 1.21264 0.98107 0.95595 0.93717 1.23946 0.95768 0.90047 0.94266 1.68888 1.13988 1.29697 1.01147 1.19883 0.93836 0.93291 0.95387 1.20832 0.98963 1.00580 0.91023 1.21194 0.94143 0.95124 0.99466 1.21120 0.99332 0.95055 0.96896 1.21054 0.95437 1.00213 0.91704 1.19703 0.98954 0.93822 0.93047 1.68685 1.10181 1.28252 1.00038 1.20308 0.98366 0.93023 1.02098 1.21194 0.97289 0.95527 1.02144 0.91098 0.88504 0.87405 0.76842 0.87960 0.87833 0.79233 0.83795 0.84196 0.84049 0.83294 0.88953 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.95 10.59 55.55 0.59 -20.37 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 18.91 29.56 -169.99 -5.03 13.89 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.20 9.02 -37.85 -0.34 -12.54 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.21 -5.17 9.74 -39.26 -0.38 -5.56 16 11 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 12 C 0.00 0.02 6.31 -83.57 -0.53 -0.51 16 13 N -0.65 -10.89 5.30 -9.74 -0.05 -10.95 16 14 C 0.50 8.61 7.74 -10.99 -0.09 8.52 16 15 O -0.50 -11.11 13.92 -14.11 -0.20 -11.30 16 16 C 0.05 0.62 5.95 36.00 0.21 0.83 16 17 O -0.30 -4.48 9.57 -47.11 -0.45 -4.93 16 18 C 0.53 6.80 7.95 34.79 0.28 7.07 16 19 O -0.49 -6.25 16.11 -19.20 -0.31 -6.56 16 20 C 0.07 0.81 6.76 -82.76 -0.56 0.25 16 21 C 0.13 1.32 10.75 -16.91 -0.18 1.14 16 22 N -0.42 -4.34 10.45 -10.51 -0.11 -4.45 16 23 C 0.10 1.00 6.60 -84.69 -0.56 0.44 16 24 C -0.09 -0.64 9.98 -39.49 -0.39 -1.03 16 25 C -0.08 -0.38 9.95 -39.89 -0.40 -0.78 16 26 C -0.10 -0.57 9.95 -39.92 -0.40 -0.97 16 27 C -0.06 -0.55 9.99 -39.41 -0.39 -0.94 16 28 C 0.07 0.79 6.60 -84.79 -0.56 0.23 16 29 N -0.35 -4.63 10.21 -7.40 -0.08 -4.71 16 30 C -0.12 -2.63 9.90 -39.79 -0.39 -3.03 16 31 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 32 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 33 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.11 2.55 6.22 -52.49 -0.33 2.22 16 35 H 0.40 4.99 8.82 -40.82 -0.36 4.63 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.19 1.38 7.62 -52.49 -0.40 0.98 16 39 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 41 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -33.94 391.98 -10.11 -44.05 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.34 Total: 8.83 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -6.05 Total: -9.40 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.35 Total: -40.47 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.96 Total: -22.80 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.94 -10.11 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006880182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.682 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds