Wall clock time and date at job start Tue Mar 31 2020 05:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35950 * 117.00224 * 2 1 4 4 C 1.38073 * 119.99845 * 359.71845 * 3 2 1 5 5 C 1.40029 * 119.83249 * 179.79899 * 4 3 2 6 6 C 1.46837 * 120.07993 * 180.23452 * 5 4 3 7 7 C 1.35657 * 119.99419 * 218.54229 * 6 5 4 8 8 S 1.76200 * 120.00222 * 7.37585 * 7 6 5 9 9 C 1.76198 * 100.00375 * 113.64603 * 8 7 6 10 10 N 1.31296 * 126.48328 * 3.83953 * 9 8 7 11 11 N 1.28529 * 109.84762 * 179.88575 * 10 9 8 12 12 C 1.30346 * 110.07086 * 0.39003 * 11 10 9 13 13 C 1.50694 * 126.33331 * 179.74436 * 12 11 10 14 14 N 1.36570 * 126.49177 * 184.15477 * 9 8 7 15 15 H 0.97004 * 127.13121 * 359.97438 * 14 9 8 16 16 C 1.46771 * 120.00061 * 187.37136 * 7 6 5 17 17 O 1.21590 * 120.00043 * 180.02562 * 16 7 6 18 18 O 1.34887 * 119.99864 * 0.02562 * 16 7 6 19 19 C 1.40083 * 119.83175 * 0.47825 * 5 4 3 20 20 C 1.37654 * 119.99279 * 359.75145 * 19 5 4 21 21 C 1.39057 * 120.16781 * 0.02562 * 20 19 5 22 22 O 1.35628 * 119.91553 * 179.97438 * 21 20 19 23 23 C 1.34765 * 116.99915 * 354.27030 * 22 21 20 24 24 H 1.08000 * 120.00581 * 5.11442 * 23 22 21 25 25 C 1.38635 * 120.00116 * 185.11226 * 23 22 21 26 26 N 1.31569 * 120.00448 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 119.99917 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47562 * 89.99853 * 27 25 23 29 29 H 1.48499 * 109.47257 * 209.99979 * 27 25 23 30 30 H 1.48501 * 109.47283 * 329.99665 * 27 25 23 31 31 H 1.08993 * 109.47730 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46675 * 60.00212 * 1 2 3 33 33 H 1.09001 * 109.47669 * 300.00858 * 1 2 3 34 34 H 1.08001 * 120.07862 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.00471 * 38.54402 * 6 5 4 36 36 H 1.09001 * 109.47269 * 275.02305 * 13 12 11 37 37 H 1.08991 * 109.47580 * 35.02452 * 13 12 11 38 38 H 1.08998 * 109.46980 * 155.02664 * 13 12 11 39 39 H 0.96696 * 117.00424 * 179.97438 * 18 16 7 40 40 H 1.07999 * 120.00471 * 179.77395 * 19 5 4 41 41 H 1.07996 * 119.91676 * 180.02562 * 20 19 5 42 42 H 0.96991 * 120.00066 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3693 -0.0059 5 6 1.9336 3.6151 -0.0016 6 6 1.1392 4.8500 -0.0026 7 6 1.5478 5.9186 -0.7315 8 16 2.9195 5.7655 -1.8268 9 6 2.1026 5.9828 -3.3727 10 7 0.8328 6.2646 -3.5519 11 7 0.5788 6.3542 -4.8086 12 6 1.6600 6.1286 -5.5007 13 6 1.7761 6.1355 -7.0032 14 7 2.6689 5.8840 -4.6115 15 1 3.5950 5.6820 -4.8176 16 6 0.8473 7.2024 -0.6079 17 8 1.2132 8.1601 -1.2616 18 8 -0.2026 7.3198 0.2308 19 6 3.3329 3.6802 -0.0015 20 6 4.0757 2.5213 -0.0005 21 6 3.4406 1.2842 0.0000 22 8 4.1775 0.1456 0.0005 23 6 5.5130 0.2810 -0.1194 24 1 5.9575 1.2653 -0.1270 25 6 6.3164 -0.8431 -0.2328 26 7 7.6201 -0.7109 -0.3503 27 14 5.5477 -2.5455 -0.2202 28 1 5.2146 -2.9486 -1.6100 29 1 6.5080 -3.5180 0.3605 30 1 4.3093 -2.5235 0.5991 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5140 0.8899 34 1 0.2156 2.3142 -0.0101 35 1 0.2297 4.9076 0.5769 36 1 1.4941 5.1578 -7.3939 37 1 1.1134 6.8964 -7.4153 38 1 2.8048 6.3573 -7.2871 39 1 -0.6318 8.1850 0.2786 40 1 3.8289 4.6396 -0.0019 41 1 5.1544 2.5729 0.0000 42 1 8.1821 -1.4974 -0.4300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008272265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:21 Heat of formation + Delta-G solvation = -26.180500 kcal Electronic energy + Delta-G solvation = -31283.382076 eV Core-core repulsion = 26744.433800 eV Total energy + Delta-G solvation = -4538.948275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.092 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.76301 -40.06925 -39.78839 -38.00159 -36.98218 -35.87701 -33.85392 -33.50220 -32.62047 -32.29203 -29.97860 -29.29128 -27.83719 -26.94372 -25.78175 -23.99869 -23.07319 -22.23209 -21.54033 -21.43811 -20.60009 -18.57605 -18.24741 -18.15751 -17.64504 -17.04704 -16.69283 -16.06136 -15.98530 -15.60242 -15.46264 -15.39388 -14.96346 -14.63518 -14.16730 -14.07733 -13.95053 -13.53208 -13.39011 -13.22770 -13.14761 -12.85641 -12.54699 -12.44161 -12.10428 -11.92174 -11.71436 -11.49054 -11.42313 -11.15127 -11.04554 -10.98277 -10.92639 -10.82092 -10.48534 -10.40722 -10.36062 -9.86992 -9.73924 -9.55370 -9.06099 -8.30962 -7.42283 -7.26880 -6.71044 -4.29946 0.39803 1.24502 1.67539 1.85830 1.96827 2.09670 2.85307 2.95917 3.07177 3.10565 3.14372 3.30114 3.31488 3.67700 4.04786 4.14909 4.36404 4.41595 4.76875 4.77903 4.83574 5.18848 5.19940 5.26070 5.28998 5.32780 5.34906 5.46615 5.47448 5.63218 5.64360 5.65077 5.71456 5.94711 5.97278 6.02667 6.23168 6.52988 6.56763 6.67864 6.91560 6.94663 7.16038 7.37091 7.65961 7.85531 8.01066 8.61558 8.68795 9.21880 10.33851 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.002813 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.896950 B = 9951.332183 C =10947.367465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.055 3.945 4 C -0.127 4.127 5 C -0.176 4.176 6 C 0.108 3.892 7 C -0.257 4.257 8 S 0.167 5.833 9 C 0.144 3.856 10 N -0.283 5.283 11 N -0.289 5.289 12 C 0.175 3.825 13 C -0.063 4.063 14 N -0.574 5.574 15 H 0.430 0.570 16 C 0.538 3.462 17 O -0.509 6.509 18 O -0.517 6.517 19 C -0.029 4.029 20 C -0.213 4.213 21 C 0.162 3.838 22 O -0.182 6.182 23 C -0.386 4.386 24 H 0.114 0.886 25 C 0.068 3.932 26 N -0.859 5.859 27 Si 0.905 3.095 28 H -0.270 1.270 29 H -0.279 1.279 30 H -0.253 1.253 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.410 0.590 40 H 0.115 0.885 41 H 0.147 0.853 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 9.518 -3.897 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.010 3.990 4 C -0.147 4.147 5 C -0.178 4.178 6 C 0.084 3.916 7 C -0.371 4.371 8 S 0.403 5.597 9 C -0.230 4.230 10 N -0.127 5.127 11 N -0.131 5.131 12 C -0.096 4.096 13 C -0.122 4.122 14 N -0.190 5.190 15 H 0.270 0.730 16 C 0.381 3.619 17 O -0.398 6.398 18 O -0.329 6.329 19 C -0.050 4.050 20 C -0.233 4.233 21 C 0.106 3.894 22 O -0.083 6.083 23 C -0.460 4.460 24 H 0.131 0.869 25 C -0.138 4.138 26 N -0.493 5.493 27 Si 0.729 3.271 28 H -0.195 1.195 29 H -0.205 1.205 30 H -0.176 1.176 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.268 0.732 40 H 0.132 0.868 41 H 0.165 0.835 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.517 9.016 -3.596 14.312 hybrid contribution -0.163 0.054 -0.696 0.717 sum -10.680 9.071 -4.292 14.655 Atomic orbital electron populations 1.22956 0.79714 1.03293 1.00742 1.86183 1.20005 1.26220 1.89776 1.17991 0.89228 0.84645 1.07114 1.20743 0.98785 0.90368 1.04770 1.18187 0.92892 0.91280 1.15435 1.22913 0.92966 0.88502 0.87178 1.22551 1.08332 0.95336 1.10899 1.84495 1.03848 1.86245 0.85105 1.27941 0.95431 1.06197 0.93470 1.74634 1.10073 1.18673 1.09280 1.73914 1.22665 1.18362 0.98134 1.25083 0.84833 1.03938 0.95783 1.20183 1.03727 1.04537 0.83800 1.44173 1.13320 1.56356 1.05190 0.73030 1.20416 0.77414 0.88347 0.75760 1.90904 1.65266 1.40105 1.43492 1.84554 1.44791 1.41904 1.61696 1.20798 0.91698 0.97086 0.95398 1.20877 1.01305 0.90145 1.10989 1.18610 0.87659 0.86939 0.96145 1.83591 1.20608 1.27673 1.76460 1.20947 0.77066 0.97364 1.50641 0.86909 1.24541 0.94549 0.99883 0.94872 1.69636 1.03213 1.32296 1.44188 0.86164 0.79977 0.81208 0.79739 1.19530 1.20483 1.17642 0.88848 0.93196 0.93127 0.85417 0.83799 0.89505 0.88812 0.90430 0.73188 0.86781 0.83545 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.59 10.28 -34.20 -0.35 -5.94 16 3 C 0.06 1.02 6.70 -39.12 -0.26 0.76 16 4 C -0.13 -1.95 8.78 -38.97 -0.34 -2.30 16 5 C -0.18 -2.65 5.39 -105.06 -0.57 -3.21 16 6 C 0.11 1.43 9.36 -37.03 -0.35 1.08 16 7 C -0.26 -3.77 5.16 -37.06 -0.19 -3.96 16 8 S 0.17 2.45 17.80 -107.50 -1.91 0.53 16 9 C 0.14 2.31 8.08 -88.30 -0.71 1.59 16 10 N -0.28 -5.18 10.84 30.69 0.33 -4.85 16 11 N -0.29 -4.96 12.18 32.99 0.40 -4.55 16 12 C 0.17 2.28 8.33 -154.03 -1.28 1.00 16 13 C -0.06 -0.48 10.51 36.00 0.38 -0.10 16 14 N -0.57 -7.35 6.31 -9.93 -0.06 -7.41 16 15 H 0.43 3.94 8.96 -40.82 -0.37 3.58 16 16 C 0.54 8.03 7.67 34.18 0.26 8.29 16 17 O -0.51 -9.03 16.86 -19.33 -0.33 -9.35 16 18 O -0.52 -5.79 12.60 -41.01 -0.52 -6.31 16 19 C -0.03 -0.46 7.94 -39.10 -0.31 -0.77 16 20 C -0.21 -4.01 9.14 -39.49 -0.36 -4.37 16 21 C 0.16 3.41 6.67 -38.76 -0.26 3.15 16 22 O -0.18 -4.43 8.35 -14.01 -0.12 -4.54 16 23 C -0.39 -9.86 9.94 30.88 0.31 -9.55 16 24 H 0.11 2.88 5.42 -52.49 -0.28 2.59 16 25 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 26 N -0.86 -22.73 13.96 55.48 0.77 -21.96 16 27 Si 0.90 20.24 28.62 -169.99 -4.86 15.38 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 30 H -0.25 -5.78 7.11 56.52 0.40 -5.38 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.55 7.65 -51.93 -0.40 0.16 16 33 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 34 H 0.13 1.59 6.28 -52.49 -0.33 1.26 16 35 H 0.14 1.56 7.52 -52.49 -0.39 1.17 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.41 2.78 9.11 45.56 0.42 3.20 16 40 H 0.11 1.63 6.13 -48.88 -0.30 1.33 16 41 H 0.15 2.82 5.62 -52.49 -0.29 2.53 16 42 H 0.29 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -34.88 383.33 -6.83 -41.71 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.17 Total: 6.89 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.79 Total: -5.37 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 1.45 Total: -38.78 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.31 Total: -26.15 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.86 Total: 15.38 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.91 Total: 0.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.88 -6.83 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008272265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.534 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds