Wall clock time and date at job start Tue Mar 31 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35950 * 117.00224 * 2 1 4 4 C 1.38073 * 119.99845 * 359.71845 * 3 2 1 5 5 C 1.40029 * 119.83249 * 179.79899 * 4 3 2 6 6 C 1.46837 * 120.07993 * 180.23452 * 5 4 3 7 7 C 1.35657 * 119.99419 * 218.54229 * 6 5 4 8 8 S 1.76200 * 120.00222 * 7.37585 * 7 6 5 9 9 C 1.76198 * 100.00375 * 113.64603 * 8 7 6 10 10 N 1.31296 * 126.48328 * 3.83953 * 9 8 7 11 11 N 1.28529 * 109.84762 * 179.88575 * 10 9 8 12 12 C 1.30346 * 110.07086 * 0.39003 * 11 10 9 13 13 C 1.50694 * 126.33331 * 179.74436 * 12 11 10 14 14 N 1.36570 * 126.49177 * 184.15477 * 9 8 7 15 15 H 0.97004 * 127.13121 * 359.97438 * 14 9 8 16 16 C 1.46771 * 120.00061 * 187.37136 * 7 6 5 17 17 O 1.21590 * 120.00043 * 180.02562 * 16 7 6 18 18 O 1.34887 * 119.99864 * 0.02562 * 16 7 6 19 19 C 1.40083 * 119.83175 * 0.47825 * 5 4 3 20 20 C 1.37654 * 119.99279 * 359.75145 * 19 5 4 21 21 C 1.39057 * 120.16781 * 0.02562 * 20 19 5 22 22 O 1.35628 * 119.91553 * 179.97438 * 21 20 19 23 23 C 1.34765 * 116.99915 * 354.27030 * 22 21 20 24 24 H 1.08000 * 120.00581 * 5.11442 * 23 22 21 25 25 C 1.38635 * 120.00116 * 185.11226 * 23 22 21 26 26 N 1.31569 * 120.00448 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 119.99917 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47562 * 89.99853 * 27 25 23 29 29 H 1.48499 * 109.47257 * 209.99979 * 27 25 23 30 30 H 1.48501 * 109.47283 * 329.99665 * 27 25 23 31 31 H 1.08993 * 109.47730 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46675 * 60.00212 * 1 2 3 33 33 H 1.09001 * 109.47669 * 300.00858 * 1 2 3 34 34 H 1.08001 * 120.07862 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.00471 * 38.54402 * 6 5 4 36 36 H 1.09001 * 109.47269 * 275.02305 * 13 12 11 37 37 H 1.08991 * 109.47580 * 35.02452 * 13 12 11 38 38 H 1.08998 * 109.46980 * 155.02664 * 13 12 11 39 39 H 0.96696 * 117.00424 * 179.97438 * 18 16 7 40 40 H 1.07999 * 120.00471 * 179.77395 * 19 5 4 41 41 H 1.07996 * 119.91676 * 180.02562 * 20 19 5 42 42 H 0.96991 * 120.00066 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3693 -0.0059 5 6 1.9336 3.6151 -0.0016 6 6 1.1392 4.8500 -0.0026 7 6 1.5478 5.9186 -0.7315 8 16 2.9195 5.7655 -1.8268 9 6 2.1026 5.9828 -3.3727 10 7 0.8328 6.2646 -3.5519 11 7 0.5788 6.3542 -4.8086 12 6 1.6600 6.1286 -5.5007 13 6 1.7761 6.1355 -7.0032 14 7 2.6689 5.8840 -4.6115 15 1 3.5950 5.6820 -4.8176 16 6 0.8473 7.2024 -0.6079 17 8 1.2132 8.1601 -1.2616 18 8 -0.2026 7.3198 0.2308 19 6 3.3329 3.6802 -0.0015 20 6 4.0757 2.5213 -0.0005 21 6 3.4406 1.2842 0.0000 22 8 4.1775 0.1456 0.0005 23 6 5.5130 0.2810 -0.1194 24 1 5.9575 1.2653 -0.1270 25 6 6.3164 -0.8431 -0.2328 26 7 7.6201 -0.7109 -0.3503 27 14 5.5477 -2.5455 -0.2202 28 1 5.2146 -2.9486 -1.6100 29 1 6.5080 -3.5180 0.3605 30 1 4.3093 -2.5235 0.5991 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5140 0.8899 34 1 0.2156 2.3142 -0.0101 35 1 0.2297 4.9076 0.5769 36 1 1.4941 5.1578 -7.3939 37 1 1.1134 6.8964 -7.4153 38 1 2.8048 6.3573 -7.2871 39 1 -0.6318 8.1850 0.2786 40 1 3.8289 4.6396 -0.0019 41 1 5.1544 2.5729 0.0000 42 1 8.1821 -1.4974 -0.4300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008272265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:20 Heat of formation + Delta-G solvation = -50.166407 kcal Electronic energy + Delta-G solvation = -31284.422183 eV Core-core repulsion = 26744.433800 eV Total energy + Delta-G solvation = -4539.988382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.092 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.88701 -41.47560 -40.94792 -39.46020 -38.35207 -36.95955 -35.04979 -34.79254 -34.32573 -33.25059 -31.36908 -30.63391 -28.77472 -28.03335 -27.43606 -25.34813 -24.21428 -23.55687 -22.81177 -22.57131 -21.82412 -19.92293 -19.70207 -19.54575 -18.83781 -18.25091 -17.95453 -17.29714 -17.14854 -16.92899 -16.71800 -16.55699 -16.36807 -15.99194 -15.59726 -15.45335 -15.13381 -15.00055 -14.44607 -14.35873 -14.17322 -13.95585 -13.86141 -13.52754 -13.37341 -13.25315 -12.91909 -12.86769 -12.66035 -12.55175 -12.34374 -12.18943 -12.14364 -12.05943 -11.95156 -11.68928 -11.55471 -11.46259 -11.07580 -10.93048 -10.67269 -9.65681 -8.79189 -8.57733 -8.53379 -6.20941 -0.79425 0.05424 0.46665 0.60814 0.74090 0.80244 1.32813 1.35519 1.54078 1.69045 1.88274 2.00933 2.23072 2.27598 2.48055 2.67936 2.89026 3.04968 3.52996 3.54839 3.92130 3.97892 4.03827 4.15927 4.26084 4.34889 4.38455 4.47816 4.53578 4.55861 4.65757 4.68257 4.75016 4.77385 4.87968 4.88649 5.07930 5.12086 5.28738 5.48174 5.58561 5.61312 5.69694 5.96864 6.04125 6.53612 6.80651 7.00038 7.52906 7.53220 8.56583 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.002813 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.896950 B = 9951.332183 C =10947.367465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.052 3.948 4 C -0.114 4.114 5 C -0.147 4.147 6 C 0.122 3.878 7 C -0.258 4.258 8 S 0.164 5.836 9 C 0.127 3.873 10 N -0.314 5.314 11 N -0.336 5.336 12 C 0.192 3.808 13 C -0.063 4.063 14 N -0.566 5.566 15 H 0.445 0.555 16 C 0.542 3.458 17 O -0.541 6.541 18 O -0.503 6.503 19 C -0.035 4.035 20 C -0.209 4.209 21 C 0.126 3.874 22 O -0.222 6.222 23 C -0.397 4.397 24 H 0.095 0.905 25 C 0.020 3.980 26 N -0.910 5.910 27 Si 0.960 3.040 28 H -0.268 1.268 29 H -0.267 1.267 30 H -0.264 1.264 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.184 0.816 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.431 0.569 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 11.167 -4.429 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.254 6.254 3 C 0.007 3.993 4 C -0.133 4.133 5 C -0.149 4.149 6 C 0.099 3.901 7 C -0.373 4.373 8 S 0.400 5.600 9 C -0.248 4.248 10 N -0.158 5.158 11 N -0.177 5.177 12 C -0.080 4.080 13 C -0.122 4.122 14 N -0.185 5.185 15 H 0.288 0.712 16 C 0.385 3.615 17 O -0.433 6.433 18 O -0.317 6.317 19 C -0.055 4.055 20 C -0.228 4.228 21 C 0.075 3.925 22 O -0.128 6.128 23 C -0.473 4.473 24 H 0.112 0.888 25 C -0.180 4.180 26 N -0.550 5.550 27 Si 0.783 3.217 28 H -0.193 1.193 29 H -0.192 1.192 30 H -0.189 1.189 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.186 0.814 35 H 0.201 0.799 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.293 0.707 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.064 10.717 -4.120 18.156 hybrid contribution 0.408 0.104 -0.609 0.741 sum -13.656 10.821 -4.729 18.054 Atomic orbital electron populations 1.23351 0.76643 1.05327 1.02452 1.86159 1.23260 1.26261 1.89738 1.18177 0.88506 0.86033 1.06593 1.21155 1.00629 0.89012 1.02524 1.18502 0.92614 0.92319 1.11430 1.23121 0.93437 0.86570 0.86985 1.22809 1.07914 0.95862 1.10670 1.84472 1.04224 1.86201 0.85106 1.27997 0.95393 1.06862 0.94579 1.74511 1.11218 1.19751 1.10303 1.73833 1.24710 1.20947 0.98187 1.26030 0.83723 1.00610 0.97637 1.20484 1.05957 1.05793 0.79952 1.44213 1.14223 1.55756 1.04306 0.71189 1.20392 0.77756 0.87792 0.75554 1.90905 1.66352 1.41126 1.44892 1.84489 1.43396 1.43666 1.60125 1.20940 0.92332 0.96763 0.95491 1.20910 1.00976 0.90757 1.10201 1.19219 0.89086 0.86996 0.97246 1.83568 1.19576 1.28876 1.80760 1.20825 0.78244 0.96750 1.51491 0.88784 1.25149 0.94924 1.02670 0.95286 1.69704 1.04090 1.32874 1.48286 0.85362 0.78765 0.78207 0.79404 1.19332 1.19181 1.18850 0.87035 0.91718 0.90843 0.81365 0.79925 0.87898 0.87934 0.87516 0.70687 0.85035 0.85119 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -11.91 10.28 -79.01 -0.81 -12.72 16 3 C 0.05 1.87 6.70 22.57 0.15 2.02 16 4 C -0.11 -3.09 8.78 22.66 0.20 -2.89 16 5 C -0.15 -3.91 5.39 -20.15 -0.11 -4.02 16 6 C 0.12 2.66 9.36 23.92 0.22 2.89 16 7 C -0.26 -6.73 5.16 23.90 0.12 -6.61 16 8 S 0.16 4.52 17.80 -56.49 -1.01 3.51 16 9 C 0.13 3.88 8.08 179.54 1.45 5.33 16 10 N -0.31 -11.04 10.84 -56.83 -0.62 -11.66 16 11 N -0.34 -11.02 12.18 -49.55 -0.60 -11.63 16 12 C 0.19 4.60 8.33 137.64 1.15 5.75 16 13 C -0.06 -0.76 10.51 71.23 0.75 -0.01 16 14 N -0.57 -13.47 6.31 -185.32 -1.17 -14.64 16 15 H 0.44 7.31 8.96 -92.71 -0.83 6.47 16 16 C 0.54 14.48 7.67 70.05 0.54 15.01 16 17 O -0.54 -18.16 16.86 19.54 0.33 -17.83 16 18 O -0.50 -9.10 12.60 -58.01 -0.73 -9.84 16 19 C -0.03 -1.05 7.94 22.58 0.18 -0.87 16 20 C -0.21 -8.04 9.14 22.33 0.20 -7.84 16 21 C 0.13 5.44 6.67 22.80 0.15 5.59 16 22 O -0.22 -11.43 8.35 -6.76 -0.06 -11.49 16 23 C -0.40 -21.81 9.94 67.91 0.67 -21.14 16 24 H 0.09 5.26 5.42 -2.91 -0.02 5.24 16 25 C 0.02 1.10 5.49 84.83 0.47 1.57 16 26 N -0.91 -51.39 13.96 21.61 0.30 -51.09 16 27 Si 0.96 43.91 28.62 68.60 1.96 45.88 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.17 7.65 -2.39 -0.02 1.15 16 33 H 0.07 1.21 7.67 -2.39 -0.02 1.20 16 34 H 0.17 3.20 6.28 -2.91 -0.02 3.19 16 35 H 0.18 2.75 7.52 -2.91 -0.02 2.73 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.43 4.12 9.11 -74.06 -0.67 3.45 16 40 H 0.13 3.55 6.13 -5.21 -0.03 3.51 16 41 H 0.13 5.43 5.62 -2.91 -0.02 5.42 16 42 H 0.29 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -82.18 383.33 4.49 -77.69 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.37 Total: 17.57 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 7.26 Total: -3.76 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.09 Total: -89.02 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -1.27 Total: -51.88 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.96 Total: 45.88 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.01 Total: 3.51 kcal Total: -82.18 4.49 -77.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008272265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.524 kcal (2) G-P(sol) polarization free energy of solvation -82.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds