Wall clock time and date at job start Tue Mar 31 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46889 * 59.99994 * 12 10 8 14 14 H 1.48501 * 109.47074 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46838 * 300.00052 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 O 1.42903 * 109.46769 * 179.97438 * 18 16 6 20 20 C 1.35971 * 116.99807 * 179.97438 * 19 18 16 21 21 C 1.38676 * 120.03632 * 359.72000 * 20 19 18 22 22 C 1.38165 * 119.98419 * 179.75344 * 21 20 19 23 23 C 1.38471 * 120.04553 * 0.54384 * 22 21 20 24 24 F 1.35104 * 119.96308 * 179.72970 * 23 22 21 25 25 C 1.38434 * 120.07241 * 359.70993 * 23 22 21 26 26 C 1.38262 * 120.01468 * 0.02562 * 25 23 22 27 27 Cl 1.73596 * 120.02216 * 179.97438 * 26 25 23 28 28 C 1.38869 * 119.85848 * 0.27453 * 5 4 3 29 29 C 1.38118 * 119.92996 * 0.02562 * 28 5 4 30 30 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 31 31 H 1.09004 * 109.47265 * 30.23327 * 1 2 3 32 32 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 33 33 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 34 34 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 35 35 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 36 36 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 37 37 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 38 38 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 39 39 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 40 40 H 1.08001 * 120.01127 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.97530 * 180.27463 * 22 21 20 42 42 H 1.08000 * 119.99353 * 180.02562 * 25 23 22 43 43 H 1.08001 * 120.03210 * 180.02562 * 28 5 4 44 44 H 1.08000 * 119.96268 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 8.4488 2.9181 -3.7743 14 1 8.3902 1.3874 -5.6547 15 1 6.3496 2.4555 -4.8968 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 8 8.3265 1.0368 2.2951 20 6 9.6713 1.1872 2.4283 21 6 10.5137 0.8616 1.3759 22 6 11.8797 1.0197 1.5106 23 6 12.4090 1.4923 2.6996 24 9 13.7454 1.6410 2.8314 25 6 11.5704 1.8130 3.7533 26 6 10.2027 1.6611 3.6197 27 17 9.1509 2.0625 4.9411 28 6 3.5780 -1.2019 0.0049 29 6 2.1968 -1.1984 0.0044 30 1 -0.3633 0.0042 1.0276 31 1 -0.3634 0.8879 -0.5175 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6553 2.1327 0.0007 34 1 4.1164 2.1380 -0.0101 35 1 7.3583 -0.9083 -0.8570 36 1 5.8170 -1.2467 -1.6806 37 1 8.2405 -0.9034 -4.4324 38 1 8.2751 -0.4415 0.8524 39 1 8.1480 1.2271 0.2458 40 1 10.1019 0.4888 0.4497 41 1 12.5353 0.7703 0.6894 42 1 11.9846 2.1819 4.6800 43 1 4.1163 -2.1382 0.0095 44 1 1.6551 -2.1327 0.0090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011028194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:58 Heat of formation + Delta-G solvation = -68.609758 kcal Electronic energy + Delta-G solvation = -31152.571125 eV Core-core repulsion = 26589.819311 eV Total energy + Delta-G solvation = -4562.751814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.98453 -40.47869 -39.77808 -38.30944 -37.15861 -36.37938 -35.32360 -32.99401 -31.68719 -31.20177 -30.61629 -29.95464 -28.17075 -27.58280 -25.68562 -23.50473 -23.20631 -22.53437 -22.20912 -21.28254 -19.15352 -18.59130 -17.55411 -17.06504 -16.94052 -16.60230 -16.15278 -15.91307 -15.61907 -15.12776 -15.09292 -14.94926 -14.70159 -14.47792 -14.13197 -13.83825 -13.72319 -13.55721 -13.40136 -13.11472 -12.90374 -12.87864 -12.49486 -12.25803 -12.13521 -11.82624 -11.59476 -11.46624 -11.39353 -11.27089 -11.11858 -10.95708 -10.92015 -10.83882 -10.76716 -10.34587 -10.00368 -9.36734 -9.18981 -8.73675 -8.58875 -8.57010 -8.18927 -7.73342 -6.35810 -4.44877 0.81719 0.97385 1.62668 1.77445 2.03015 2.72945 3.02265 3.13918 3.20040 3.23415 3.27341 3.84150 4.08393 4.13749 4.20573 4.51585 4.64346 4.87905 4.97133 5.02998 5.10282 5.12167 5.13325 5.30824 5.32989 5.39937 5.50613 5.55329 5.67809 5.70800 5.74556 5.84580 5.92526 5.94060 6.00713 6.06402 6.36202 6.42463 6.51644 6.68670 6.81983 6.87749 6.98437 7.11516 7.17252 7.51227 7.59739 7.81805 7.95327 8.56418 8.72096 9.24102 10.70653 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.007696 B = 0.003011 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3637.382721 B = 9296.143356 C =12161.046878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.101 4.101 5 C 0.170 3.830 6 N -0.556 5.556 7 C 0.236 3.764 8 C -0.546 4.546 9 H 0.063 0.937 10 C 0.070 3.930 11 N -0.888 5.888 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.525 3.475 17 O -0.532 6.532 18 C 0.043 3.957 19 O -0.278 6.278 20 C 0.141 3.859 21 C -0.169 4.169 22 C -0.103 4.103 23 C 0.065 3.935 24 F -0.137 7.137 25 C -0.110 4.110 26 C -0.047 4.047 27 Cl -0.042 7.042 28 C -0.118 4.118 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.268 0.732 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.122 0.878 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 1.029 8.824 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.121 4.121 5 C 0.079 3.921 6 N -0.286 5.286 7 C 0.117 3.883 8 C -0.584 4.584 9 H 0.081 0.919 10 C -0.134 4.134 11 N -0.525 5.525 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.313 3.687 17 O -0.408 6.408 18 C -0.034 4.034 19 O -0.190 6.190 20 C 0.093 3.907 21 C -0.188 4.188 22 C -0.122 4.122 23 C 0.045 3.955 24 F -0.116 7.116 25 C -0.129 4.129 26 C -0.074 4.074 27 Cl -0.013 7.013 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.174 0.826 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.140 0.860 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.412 1.152 9.460 9.539 hybrid contribution 0.639 0.678 -1.112 1.451 sum 1.051 1.830 8.348 8.611 Atomic orbital electron populations 1.20723 0.91562 1.02376 1.01850 1.19818 0.95749 0.93232 1.01457 1.20812 0.93539 0.97374 1.01388 1.21212 0.94076 0.97635 0.99135 1.17467 0.82863 0.92978 0.98753 1.45756 1.03573 1.62397 1.16844 1.19646 0.91727 0.95833 0.81061 1.21393 1.37578 0.95190 1.04252 0.91871 1.24911 0.94993 0.95986 0.97521 1.69900 1.37353 1.20482 1.24782 0.86570 0.78724 0.82155 0.80231 1.19920 1.20976 1.19946 1.19778 0.88378 0.77616 0.82947 1.90708 1.69880 1.48689 1.31571 1.22701 0.93671 1.01991 0.85053 1.86209 1.17199 1.79695 1.35880 1.18756 0.83926 0.95348 0.92703 1.21322 0.93070 1.04709 0.99656 1.21077 0.95575 0.98766 0.96764 1.17291 0.77478 1.05487 0.95231 1.91503 1.29851 1.93908 1.96359 1.20751 0.90566 1.01857 0.99748 1.19813 0.90688 1.07359 0.89586 1.98391 1.65597 1.92174 1.45154 1.21171 0.94207 0.97399 1.00985 1.20773 0.93436 0.97342 1.01606 0.91609 0.91852 0.91844 0.86254 0.86189 0.94187 0.93774 0.92200 0.88539 0.86963 0.82595 0.83671 0.83267 0.85957 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.10 -1.47 5.88 -104.59 -0.62 -2.08 16 3 C -0.11 -1.76 9.69 -39.61 -0.38 -2.14 16 4 C -0.10 -1.87 9.55 -39.39 -0.38 -2.25 16 5 C 0.17 3.33 4.75 -83.69 -0.40 2.93 16 6 N -0.56 -11.28 2.51 -114.74 -0.29 -11.56 16 7 C 0.24 5.13 4.88 -5.19 -0.03 5.11 16 8 C -0.55 -13.06 9.16 -34.44 -0.32 -13.37 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -22.64 13.29 55.43 0.74 -21.91 16 12 Si 0.90 19.35 29.54 -169.99 -5.02 14.33 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.53 10.58 7.60 -10.99 -0.08 10.50 16 17 O -0.53 -12.06 16.26 -14.36 -0.23 -12.30 16 18 C 0.04 0.74 3.88 36.01 0.14 0.88 16 19 O -0.28 -4.78 9.13 -39.56 -0.36 -5.15 16 20 C 0.14 2.07 6.68 -39.21 -0.26 1.81 16 21 C -0.17 -2.17 9.04 -39.45 -0.36 -2.53 16 22 C -0.10 -1.18 10.02 -39.52 -0.40 -1.58 16 23 C 0.06 0.76 7.30 -39.42 -0.29 0.47 16 24 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 25 C -0.11 -1.27 9.80 -39.50 -0.39 -1.66 16 26 C -0.05 -0.64 6.33 -39.37 -0.25 -0.89 16 27 Cl -0.04 -0.59 28.50 -51.86 -1.48 -2.06 16 28 C -0.12 -2.05 9.69 -39.39 -0.38 -2.43 16 29 C -0.11 -1.68 9.69 -39.61 -0.38 -2.07 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.04 0.85 6.47 -51.93 -0.34 0.52 16 36 H 0.04 1.03 7.86 -51.93 -0.41 0.62 16 37 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 38 H 0.10 1.47 6.77 -51.93 -0.35 1.12 16 39 H 0.11 1.89 7.45 -51.93 -0.39 1.51 16 40 H 0.16 1.93 6.30 -52.49 -0.33 1.60 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -28.43 400.84 -10.22 -38.65 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.16 Total: 4.01 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.50 Total: -8.47 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.45 Total: -33.47 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.59 Total: -17.44 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.43 -10.22 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011028194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.962 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds