Wall clock time and date at job start Tue Mar 31 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38131 * 119.97302 * 2 1 4 4 C 1.38837 * 119.94580 * 179.97438 * 3 2 1 5 5 N 1.39976 * 120.05885 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99644 * 247.89516 * 5 4 3 7 7 C 1.50700 * 109.47278 * 90.00100 * 6 5 4 8 8 H 1.08000 * 119.99862 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99931 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99908 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99679 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46934 * 60.00184 * 11 9 7 13 13 H 1.48504 * 109.46801 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47293 * 299.99982 * 11 9 7 15 15 C 1.34780 * 120.00228 * 67.89235 * 5 4 3 16 16 O 1.21291 * 119.99509 * 4.73953 * 15 5 4 17 17 C 1.50695 * 120.00042 * 184.73945 * 15 5 4 18 18 O 1.45202 * 109.47053 * 180.02562 * 17 15 5 19 19 C 1.34775 * 116.99885 * 180.02562 * 18 17 15 20 20 O 1.21529 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.47226 * 119.99855 * 179.97438 * 19 18 17 22 22 C 1.47056 * 127.20228 * 179.97438 * 21 19 18 23 23 C 1.34162 * 105.94927 * 180.02562 * 22 21 19 24 24 O 1.34215 * 109.14704 * 0.02562 * 23 22 21 25 25 C 1.33629 * 110.92201 * 359.72532 * 24 23 22 26 26 C 1.38887 * 119.88654 * 359.97438 * 4 3 2 27 27 C 1.38085 * 119.93930 * 359.97438 * 26 4 3 28 28 C 1.38365 * 119.97408 * 179.97438 * 2 1 3 29 29 Cl 1.73596 * 119.93985 * 359.73102 * 28 2 1 30 30 H 1.09002 * 109.47479 * 270.02365 * 1 2 3 31 31 H 1.09000 * 109.46960 * 30.02756 * 1 2 3 32 32 H 1.09005 * 109.47067 * 150.02350 * 1 2 3 33 33 H 1.08003 * 120.02508 * 359.97438 * 3 2 1 34 34 H 1.09008 * 109.46512 * 209.99771 * 6 5 4 35 35 H 1.08996 * 109.47247 * 329.99494 * 6 5 4 36 36 H 0.97001 * 119.99342 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.47104 * 300.00080 * 17 15 5 38 38 H 1.09001 * 109.47146 * 59.99963 * 17 15 5 39 39 H 1.07999 * 127.02463 * 0.02562 * 22 21 19 40 40 H 1.08000 * 125.42493 * 180.02562 * 23 22 21 41 41 H 1.08001 * 125.81002 * 180.28452 * 25 24 23 42 42 H 1.08000 * 120.02845 * 180.02562 * 26 4 3 43 43 H 1.08000 * 119.97148 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5854 1.1959 0.0005 5 7 4.2871 2.4071 0.0000 6 6 5.0679 2.8007 -1.1755 7 6 4.1968 3.5952 -2.1141 8 1 3.1647 3.7874 -1.8606 9 6 4.7175 4.0768 -3.2965 10 7 5.9744 3.8432 -3.6049 11 14 3.6375 5.0611 -4.4602 12 1 3.1404 6.2760 -3.7659 13 1 4.4290 5.4602 -5.6517 14 1 2.4844 4.2290 -4.8885 15 6 4.2445 3.2112 1.0808 16 8 3.6697 2.8473 2.0850 17 6 4.9108 4.5622 1.0416 18 8 4.7258 5.2303 2.3175 19 6 5.2647 6.4587 2.4487 20 8 5.8730 6.9575 1.5224 21 6 5.1165 7.1961 3.7143 22 6 5.6363 8.5352 4.0292 23 6 5.2579 8.7903 5.2908 24 8 4.5659 7.7418 5.7634 25 6 4.4640 6.7818 4.8394 26 6 4.2769 -0.0086 0.0016 27 6 3.5823 -1.2020 0.0027 28 6 2.1983 -1.1986 0.0005 29 17 1.3280 -2.7007 0.0083 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6570 2.1319 -0.0004 34 1 5.9147 3.4110 -0.8614 35 1 5.4321 1.9087 -1.6851 36 1 6.3406 4.1818 -4.4369 37 1 5.9763 4.4364 0.8489 38 1 4.4667 5.1635 0.2484 39 1 6.2062 9.1813 3.3779 40 1 5.4755 9.6951 5.8389 41 1 3.9542 5.8377 4.9627 42 1 5.3569 -0.0118 0.0025 43 1 4.1195 -2.1389 0.0039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011537900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:11 Heat of formation + Delta-G solvation = -78.630927 kcal Electronic energy + Delta-G solvation = -31127.203105 eV Core-core repulsion = 26551.643951 eV Total energy + Delta-G solvation = -4575.559154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.091 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.75406 -40.39798 -39.78137 -38.39894 -36.45104 -36.04565 -35.19984 -33.12897 -32.90983 -32.37199 -30.53017 -30.04030 -28.11200 -27.17246 -26.76846 -24.29056 -23.19961 -22.58297 -21.67564 -21.45077 -20.46816 -19.01554 -18.45316 -17.12456 -16.95398 -16.75032 -16.54029 -16.31703 -16.10981 -15.98386 -15.60707 -15.48006 -14.66728 -14.44505 -14.17889 -14.00441 -13.90045 -13.28787 -13.14785 -13.03614 -12.78275 -12.73979 -12.42056 -12.33457 -12.30056 -12.20500 -11.90253 -11.70953 -11.37332 -11.24471 -11.06477 -10.86778 -10.61425 -10.54985 -10.49155 -10.31037 -10.07975 -9.99721 -9.43948 -9.05105 -8.72586 -8.67674 -8.56312 -7.85821 -6.30267 -4.39349 1.08781 1.32237 1.51735 1.80741 2.26970 2.40741 2.76538 2.94498 3.08705 3.20162 3.25376 3.27683 3.65702 3.82251 4.25167 4.44519 4.52575 4.88540 4.93872 4.97158 5.01123 5.04800 5.26049 5.38511 5.44072 5.47857 5.49424 5.61952 5.68978 5.70496 5.75826 5.76973 5.98375 6.02573 6.13673 6.26182 6.44673 6.48835 6.58439 6.68613 6.70803 6.86198 6.98664 7.35441 7.61773 7.83147 7.85586 7.90823 8.53817 8.69646 9.29578 10.76847 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.006981 B = 0.002840 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4010.108916 B = 9857.589815 C =12805.139015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 C -0.095 4.095 4 C 0.187 3.813 5 N -0.557 5.557 6 C 0.235 3.765 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.898 3.102 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.527 3.473 16 O -0.537 6.537 17 C 0.060 3.940 18 O -0.337 6.337 19 C 0.533 3.467 20 O -0.497 6.497 21 C -0.226 4.226 22 C -0.161 4.161 23 C -0.044 4.044 24 O -0.174 6.174 25 C 0.057 3.943 26 C -0.116 4.116 27 C -0.097 4.097 28 C -0.047 4.047 29 Cl -0.081 7.081 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.269 0.731 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.163 0.837 40 H 0.211 0.789 41 H 0.224 0.776 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -0.266 13.222 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.114 4.114 4 C 0.096 3.904 5 N -0.287 5.287 6 C 0.117 3.883 7 C -0.587 4.587 8 H 0.081 0.919 9 C -0.134 4.134 10 N -0.523 5.523 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.200 1.200 15 C 0.315 3.685 16 O -0.414 6.414 17 C -0.017 4.017 18 O -0.253 6.253 19 C 0.377 3.623 20 O -0.386 6.386 21 C -0.228 4.228 22 C -0.180 4.180 23 C -0.109 4.109 24 O -0.069 6.069 25 C -0.013 4.013 26 C -0.136 4.136 27 C -0.117 4.117 28 C -0.074 4.074 29 Cl -0.052 7.052 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.148 0.852 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.180 0.820 40 H 0.227 0.773 41 H 0.241 0.759 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.968 -0.395 13.575 14.149 hybrid contribution -0.216 0.531 -1.417 1.529 sum -4.184 0.137 12.158 12.859 Atomic orbital electron populations 1.20832 0.90414 1.03294 1.02661 1.19541 0.96532 0.90912 0.99981 1.21070 0.93225 0.97441 0.99706 1.17540 0.90444 0.85643 0.96803 1.45845 1.48894 1.16925 1.16997 1.19713 0.90707 0.97137 0.80771 1.21342 0.97864 1.35214 1.04275 0.91870 1.24909 0.95102 0.95747 0.97592 1.69893 1.12990 1.44795 1.24635 0.86539 0.80373 0.80444 0.80137 1.19897 1.20944 1.19967 1.19905 0.80546 0.85266 0.82800 1.90681 1.44445 1.74739 1.31554 1.22809 1.03122 0.92083 0.83636 1.86478 1.71031 1.29640 1.38182 1.19964 0.76083 0.79522 0.86715 1.90899 1.38934 1.68259 1.40469 1.20594 1.10549 0.97551 0.94153 1.22773 1.03758 0.94934 0.96511 1.23930 0.99449 0.92235 0.95325 1.83831 1.58677 1.23851 1.40566 1.24875 0.97409 0.93061 0.85942 1.21144 1.00483 0.90767 1.01195 1.20772 0.91695 0.98494 1.00708 1.20674 0.92188 0.86074 1.08436 1.98321 1.77020 1.32751 1.97118 0.90854 0.91109 0.90972 0.85176 0.93814 0.93664 0.92168 0.87820 0.86281 0.81986 0.77275 0.75938 0.84893 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.61 36.00 0.35 -1.09 16 2 C -0.07 -1.06 5.88 -104.62 -0.62 -1.67 16 3 C -0.09 -1.68 9.20 -39.40 -0.36 -2.05 16 4 C 0.19 3.54 4.75 -83.68 -0.40 3.14 16 5 N -0.56 -11.24 2.51 -114.73 -0.29 -11.53 16 6 C 0.23 5.27 4.88 -5.19 -0.03 5.24 16 7 C -0.55 -13.64 9.16 -34.44 -0.32 -13.95 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 11 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.53 10.54 7.61 -10.99 -0.08 10.46 16 16 O -0.54 -11.55 16.26 -14.11 -0.23 -11.78 16 17 C 0.06 1.12 4.62 36.00 0.17 1.28 16 18 O -0.34 -5.91 9.61 -47.38 -0.46 -6.36 16 19 C 0.53 8.94 7.95 34.38 0.27 9.21 16 20 O -0.50 -9.71 16.77 -19.29 -0.32 -10.03 16 21 C -0.23 -3.00 6.31 -103.30 -0.65 -3.65 16 22 C -0.16 -1.75 11.01 -37.44 -0.41 -2.16 16 23 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 24 O -0.17 -1.68 10.52 7.71 0.08 -1.59 16 25 C 0.06 0.61 11.94 30.11 0.36 0.97 16 26 C -0.12 -1.93 9.69 -39.40 -0.38 -2.31 16 27 C -0.10 -1.43 9.82 -39.58 -0.39 -1.82 16 28 C -0.05 -0.70 6.32 -39.47 -0.25 -0.95 16 29 Cl -0.08 -1.03 27.29 -51.86 -1.41 -2.44 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.07 0.83 6.90 -51.93 -0.36 0.47 16 33 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.04 1.00 6.47 -51.92 -0.34 0.66 16 35 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.10 1.87 7.25 -51.93 -0.38 1.49 16 38 H 0.12 2.34 7.91 -51.93 -0.41 1.93 16 39 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.21 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.22 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -30.93 400.42 -8.18 -39.10 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.81 Total: 4.02 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.48 Total: 2.37 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.45 Total: -34.54 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.93 Total: -29.77 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.41 Total: -2.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.93 -8.18 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011537900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.527 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds