Wall clock time and date at job start Tue Mar 31 2020 05:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29323 * 126.05699 * 2 1 4 4 N 1.26101 * 117.97448 * 180.02562 * 3 2 1 5 5 C 1.30307 * 117.60221 * 359.97438 * 4 3 2 6 6 S 1.76209 * 126.17044 * 179.97438 * 5 4 3 7 7 C 1.81000 * 99.99785 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47094 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99993 * 5.87281 * 8 7 6 10 10 N 1.34777 * 119.99643 * 185.87891 * 8 7 6 11 11 C 1.46492 * 120.00521 * 7.65436 * 10 8 7 12 12 C 1.50695 * 109.47230 * 97.57441 * 11 10 8 13 13 H 1.08006 * 119.99844 * 125.26490 * 12 11 10 14 14 C 1.37875 * 120.00177 * 305.26524 * 12 11 10 15 15 N 1.31512 * 119.99859 * 11.29973 * 14 12 11 16 16 Si 1.86805 * 119.99891 * 191.30216 * 14 12 11 17 17 H 1.48499 * 109.46994 * 60.00240 * 16 14 12 18 18 H 1.48507 * 109.46880 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46870 * 299.99880 * 16 14 12 20 20 C 1.39924 * 119.99255 * 187.65308 * 10 8 7 21 21 C 1.38896 * 120.06600 * 185.74076 * 20 10 8 22 22 C 1.38100 * 119.92833 * 179.74658 * 21 20 10 23 23 C 1.38301 * 120.06821 * 0.52529 * 22 21 20 24 24 C 1.50697 * 119.93087 * 179.70056 * 23 22 21 25 25 C 1.38261 * 120.14445 * 359.73000 * 23 22 21 26 26 C 1.50701 * 119.96810 * 179.97438 * 25 23 22 27 27 C 1.38137 * 120.06913 * 0.02562 * 25 23 22 28 28 S 1.76484 * 126.06145 * 180.28559 * 2 1 3 29 29 H 1.09000 * 109.47380 * 89.97984 * 1 2 3 30 30 H 1.09003 * 109.47109 * 209.97144 * 1 2 3 31 31 H 1.08999 * 109.47511 * 329.97547 * 1 2 3 32 32 H 1.08999 * 109.47109 * 59.99964 * 7 6 5 33 33 H 1.09003 * 109.47213 * 299.99881 * 7 6 5 34 34 H 1.09002 * 109.47185 * 337.57557 * 11 10 8 35 35 H 1.08999 * 109.47291 * 217.57940 * 11 10 8 36 36 H 0.97006 * 119.99901 * 174.98584 * 15 14 12 37 37 H 1.07994 * 120.03691 * 359.97438 * 21 20 10 38 38 H 1.07993 * 119.96296 * 180.25416 * 22 21 20 39 39 H 1.08997 * 109.47405 * 270.02986 * 24 23 22 40 40 H 1.08998 * 109.46870 * 30.02382 * 24 23 22 41 41 H 1.08999 * 109.47542 * 150.02647 * 24 23 22 42 42 H 1.08998 * 109.46601 * 270.01470 * 26 25 23 43 43 H 1.08992 * 109.46817 * 30.01819 * 26 25 23 44 44 H 1.09001 * 109.47138 * 150.02438 * 26 25 23 45 45 H 1.08003 * 120.03728 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2682 1.0455 0.0000 4 7 3.5166 0.8682 -0.0005 5 6 3.9520 -0.3600 -0.0005 6 16 5.6402 -0.8649 -0.0017 7 6 6.4521 0.7528 -0.0021 8 6 7.9473 0.5645 -0.0039 9 8 8.4183 -0.5478 -0.1122 10 7 8.7610 1.6323 0.1151 11 6 8.1992 2.9519 0.4136 12 6 8.3118 3.2232 1.8916 13 1 8.8042 4.1191 2.2402 14 6 7.7863 2.3278 2.7989 15 7 7.3882 1.1409 2.3962 16 14 7.6397 2.8008 4.6001 17 1 6.7673 3.9956 4.7287 18 1 7.0476 1.6718 5.3617 19 1 8.9872 3.1111 5.1416 20 6 10.1426 1.4803 -0.0465 21 6 10.9932 2.5521 0.1925 22 6 12.3567 2.3974 0.0372 23 6 12.8745 1.1801 -0.3663 24 6 14.3623 1.0168 -0.5413 25 6 12.0300 0.1129 -0.6101 26 6 12.5985 -1.2116 -1.0502 27 6 10.6656 0.2596 -0.4517 28 16 2.5459 -1.4267 -0.0071 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 6.1564 1.3079 0.8881 33 1 6.1552 1.3081 -0.8919 34 1 7.1501 2.9753 0.1188 35 1 8.7487 3.7142 -0.1387 36 1 7.0865 0.4849 3.0440 37 1 10.5891 3.5042 0.5029 38 1 13.0189 3.2291 0.2268 39 1 14.6375 1.2679 -1.5657 40 1 14.8842 1.6804 0.1481 41 1 14.6415 -0.0160 -0.3329 42 1 12.6522 -1.2403 -2.1385 43 1 13.5982 -1.3342 -0.6337 44 1 11.9561 -2.0182 -0.6969 45 1 10.0064 -0.5743 -0.6427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011577534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:51 Heat of formation + Delta-G solvation = 71.410942 kcal Electronic energy + Delta-G solvation = -29569.134731 eV Core-core repulsion = 25613.004303 eV Total energy + Delta-G solvation = -3956.130427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70327 -39.93500 -38.01684 -35.40105 -33.12637 -32.98658 -31.75168 -31.22304 -29.47877 -28.72883 -28.08425 -26.35846 -25.29604 -25.13600 -23.19339 -21.59426 -20.80249 -20.34677 -19.03729 -18.51296 -17.18426 -16.79528 -16.42836 -15.87843 -15.63115 -15.01736 -14.83327 -14.55028 -14.34648 -14.21545 -13.81086 -13.54881 -13.33300 -13.24562 -13.08209 -12.84909 -12.63471 -12.56527 -12.44624 -12.40483 -12.06558 -12.04516 -11.67446 -11.53998 -11.28668 -11.09824 -10.91063 -10.87200 -10.60860 -10.29777 -10.27990 -10.27841 -10.11898 -10.00735 -9.84662 -9.49738 -9.03497 -8.72854 -8.46259 -7.97462 -7.36967 -6.84922 -6.30318 -4.54213 0.42374 0.74167 1.30449 1.74871 2.05861 2.17276 2.49432 2.69838 3.14113 3.22117 3.23196 3.62107 4.03299 4.15595 4.22720 4.63953 4.90227 4.93359 5.17294 5.21228 5.31414 5.36701 5.48426 5.49455 5.64486 5.67628 5.73354 5.77349 5.82776 5.88928 6.02136 6.16755 6.20162 6.26666 6.32726 6.47814 6.60605 6.67395 6.80045 6.86914 7.12911 7.20703 7.37011 7.43971 7.57909 7.77247 8.04293 8.40664 8.54359 8.70469 9.09323 9.19772 10.58183 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.002915 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.759113 B = 9602.665818 C =11247.420642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.011 3.989 3 N -0.249 5.249 4 N -0.273 5.273 5 C 0.003 3.997 6 S 0.098 5.902 7 C -0.133 4.133 8 C 0.589 3.411 9 O -0.554 6.554 10 N -0.517 5.517 11 C 0.214 3.786 12 C -0.534 4.534 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.879 5.879 16 Si 0.903 3.097 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.275 1.275 20 C 0.192 3.808 21 C -0.154 4.154 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.104 4.104 25 C -0.074 4.074 26 C -0.109 4.109 27 C -0.176 4.176 28 S 0.073 5.927 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.276 0.724 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.310 -4.295 -6.309 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.274 4.274 3 N -0.086 5.086 4 N -0.115 5.115 5 C -0.383 4.383 6 S 0.329 5.671 7 C -0.284 4.284 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.235 5.235 11 C 0.095 3.905 12 C -0.572 4.572 13 H 0.087 0.913 14 C -0.127 4.127 15 N -0.518 5.518 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.094 3.906 21 C -0.174 4.174 22 C -0.119 4.119 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.075 4.075 26 C -0.166 4.166 27 C -0.196 4.196 28 S 0.311 5.689 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.193 0.807 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.739 -5.725 -6.291 9.292 hybrid contribution -0.604 1.628 1.377 2.216 sum -4.344 -4.097 -4.914 7.733 Atomic orbital electron populations 1.20320 0.84070 1.04427 1.04002 1.29750 1.02622 0.89207 1.05854 1.70710 0.97513 1.27064 1.13266 1.71784 1.05047 1.15924 1.18724 1.32053 1.07318 0.94398 1.04574 1.86029 0.83799 1.10430 1.86804 1.24599 0.96103 0.97436 1.10302 1.18905 0.86767 0.83557 0.72804 1.90280 1.75632 1.25005 1.52775 1.46017 1.03214 1.11227 1.63003 1.19749 0.94898 0.79554 0.96277 1.21419 1.37190 1.07745 0.90818 0.91280 1.25025 0.93199 0.94554 0.99951 1.69414 1.42735 1.04527 1.35125 0.86450 0.78686 0.78360 0.83477 1.19808 1.20986 1.20031 1.17957 0.83565 0.94034 0.95025 1.20862 0.92697 0.99241 1.04642 1.20626 0.94445 0.96386 1.00408 1.19495 0.95050 0.94106 1.05623 1.20686 0.92631 1.01720 1.01007 1.19576 0.93255 0.94857 0.99766 1.20759 1.00573 0.94599 1.00638 1.22348 0.95230 0.99175 1.02802 1.85540 0.98570 1.12773 1.72019 0.89377 0.89919 0.88899 0.80689 0.88808 0.93401 0.94134 0.91318 0.85400 0.86999 0.92368 0.92589 0.92013 0.91953 0.91911 0.91862 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.01 0.15 7.79 -13.34 -0.10 0.05 16 3 N -0.25 -4.31 11.55 33.57 0.39 -3.93 16 4 N -0.27 -5.22 10.96 31.32 0.34 -4.88 16 5 C 0.00 0.05 7.85 52.12 0.41 0.46 16 6 S 0.10 1.82 21.46 -107.50 -2.31 -0.49 16 7 C -0.13 -2.74 3.52 36.01 0.13 -2.62 16 8 C 0.59 13.36 5.49 -10.98 -0.06 13.30 16 9 O -0.55 -13.20 12.39 5.56 0.07 -13.13 16 10 N -0.52 -11.67 2.37 -114.74 -0.27 -11.94 16 11 C 0.21 4.70 5.01 -5.20 -0.03 4.67 16 12 C -0.53 -12.82 8.74 -34.44 -0.30 -13.12 16 13 H 0.07 1.64 7.84 -52.48 -0.41 1.23 16 14 C 0.08 1.88 5.41 -17.82 -0.10 1.78 16 15 N -0.88 -21.92 7.30 55.43 0.40 -21.51 16 16 Si 0.90 20.00 29.56 -169.99 -5.02 14.98 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.19 4.22 6.45 -83.69 -0.54 3.68 16 21 C -0.15 -3.09 8.99 -39.39 -0.35 -3.45 16 22 C -0.10 -1.77 9.69 -39.61 -0.38 -2.15 16 23 C -0.14 -2.41 5.88 -104.59 -0.62 -3.03 16 24 C -0.10 -1.35 9.60 36.00 0.35 -1.01 16 25 C -0.07 -1.35 5.88 -104.65 -0.62 -1.96 16 26 C -0.11 -1.59 9.60 36.01 0.35 -1.25 16 27 C -0.18 -3.73 8.64 -39.39 -0.34 -4.07 16 28 S 0.07 0.98 23.54 -107.50 -2.53 -1.55 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.18 4.03 5.14 -51.92 -0.27 3.77 16 33 H 0.09 1.81 7.99 -51.91 -0.41 1.40 16 34 H 0.05 1.04 6.20 -51.93 -0.32 0.72 16 35 H 0.04 0.81 6.92 -51.93 -0.36 0.46 16 36 H 0.28 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.13 2.55 6.11 -52.49 -0.32 2.23 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.06 0.74 5.94 -51.93 -0.31 0.43 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.80 5.94 -51.93 -0.31 0.49 16 44 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 45 H 0.17 3.86 4.70 -55.27 -0.26 3.60 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -28.36 389.52 -10.37 -38.74 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.48 Total: 6.71 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.83 Total: -8.87 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.86 Total: -42.26 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.13 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -4.84 Total: -2.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.36 -10.37 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011577534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.148 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds