Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46786 * 2 1 4 4 N 1.46494 * 109.47088 * 119.99855 * 2 1 3 5 5 C 1.34780 * 120.00254 * 268.47067 * 4 2 1 6 6 O 1.21610 * 119.99617 * 0.02562 * 5 4 2 7 7 C 1.47423 * 119.99919 * 179.97438 * 5 4 2 8 8 C 1.39679 * 120.21778 * 0.02562 * 7 5 4 9 9 C 1.37803 * 119.93664 * 179.97438 * 8 7 5 10 10 C 1.38661 * 120.38702 * 0.02562 * 9 8 7 11 11 C 1.37912 * 120.43498 * 359.97438 * 10 9 8 12 12 C 1.39113 * 120.04763 * 359.73723 * 11 10 9 13 13 S 1.76206 * 120.18806 * 180.25635 * 12 11 10 14 14 C 1.76200 * 99.99810 * 8.99231 * 13 12 11 15 15 H 1.07999 * 120.00211 * 5.52232 * 14 13 12 16 16 C 1.38812 * 119.99772 * 185.51592 * 14 13 12 17 17 N 1.31551 * 119.99968 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99647 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46981 * 90.00417 * 18 16 14 20 20 H 1.48501 * 109.47006 * 209.99948 * 18 16 14 21 21 H 1.48500 * 109.47508 * 330.00359 * 18 16 14 22 22 C 1.50704 * 109.46797 * 240.00246 * 2 1 3 23 23 C 1.36126 * 120.16838 * 266.91596 * 22 2 1 24 24 C 1.39328 * 120.98789 * 179.97438 * 23 22 2 25 25 C 1.36128 * 120.98765 * 0.02562 * 24 23 22 26 26 C 1.40507 * 119.65595 * 359.97438 * 25 24 23 27 27 C 1.40542 * 121.28968 * 180.02562 * 26 25 24 28 28 C 1.36083 * 119.65089 * 179.97438 * 27 26 25 29 29 C 1.39382 * 120.99734 * 0.02562 * 28 27 26 30 30 C 1.36085 * 120.98991 * 359.95118 * 29 28 27 31 31 C 1.40494 * 120.17443 * 86.90011 * 22 2 1 32 32 H 1.09000 * 109.47267 * 300.00167 * 1 2 3 33 33 H 1.09001 * 109.47236 * 60.00264 * 1 2 3 34 34 H 1.08994 * 109.47229 * 179.97438 * 1 2 3 35 35 H 0.97000 * 119.99503 * 88.47042 * 4 2 1 36 36 H 1.07999 * 120.02669 * 359.97438 * 8 7 5 37 37 H 1.08003 * 119.80445 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.78377 * 179.97438 * 10 9 8 39 39 H 1.07990 * 119.97579 * 180.02562 * 11 10 9 40 40 H 0.96999 * 119.99407 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.50715 * 0.02562 * 23 22 2 42 42 H 1.07993 * 119.50925 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.17336 * 179.71027 * 25 24 23 44 44 H 1.07997 * 120.17419 * 359.93291 * 27 26 25 45 45 H 1.08010 * 119.50628 * 179.97438 * 28 27 26 46 46 H 1.08004 * 119.50358 * 179.97438 * 29 28 27 47 47 H 1.07999 * 120.17376 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.2724 0.0074 2.3208 6 8 2.0958 1.2104 2.3427 7 6 2.7633 -0.6877 3.5247 8 6 2.9672 -2.0693 3.5046 9 6 3.4267 -2.7131 4.6331 10 6 3.6882 -1.9973 5.7915 11 6 3.4924 -0.6326 5.8287 12 6 3.0348 0.0365 4.6981 13 16 2.7897 1.7809 4.7395 14 6 3.5167 2.1550 6.3003 15 1 4.0184 1.3808 6.8618 16 6 3.4447 3.4449 6.8081 17 7 2.8333 4.3878 6.1243 18 14 4.2148 3.8414 8.4631 19 1 5.6244 4.2646 8.2645 20 1 3.4550 4.9398 9.1123 21 1 4.1775 2.6350 9.3283 22 6 2.0323 -0.7104 -1.2305 23 6 2.3200 -2.0401 -1.1833 24 6 2.7848 -2.7139 -2.3107 25 6 2.9653 -2.0621 -3.4921 26 6 2.6789 -0.6893 -3.5794 27 6 2.8522 0.0175 -4.7818 28 6 2.5641 1.3466 -4.8290 29 6 2.0991 2.0208 -3.7012 30 6 1.9187 1.3692 -2.5201 31 6 2.2058 -0.0039 -2.4325 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 2.1589 -1.6502 1.1787 36 1 2.7649 -2.6325 2.6056 37 1 3.5832 -3.7816 4.6153 38 1 4.0477 -2.5117 6.6704 39 1 3.6988 -0.0824 6.7346 40 1 2.7827 5.2891 6.4794 41 1 2.1852 -2.5809 -0.2583 42 1 3.0061 -3.7690 -2.2463 43 1 3.3307 -2.5964 -4.3566 44 1 3.2128 -0.4914 -5.6635 45 1 2.6985 1.8876 -5.7542 46 1 1.8782 3.0760 -3.7657 47 1 1.5582 1.9047 -1.6543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013019220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = 37.900602 kcal Electronic energy + Delta-G solvation = -30394.912035 eV Core-core repulsion = 26405.424883 eV Total energy + Delta-G solvation = -3989.487153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.119 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.87178 -39.49366 -37.68435 -36.82871 -35.36672 -32.79761 -32.75468 -31.10321 -30.51727 -30.28047 -29.52999 -28.85672 -25.82496 -24.42962 -23.61637 -23.22760 -22.66342 -21.94542 -20.56217 -20.04668 -18.35967 -17.60919 -17.41181 -16.89393 -16.53049 -15.83705 -15.57678 -15.16511 -14.70779 -14.58859 -14.48916 -14.18247 -14.05216 -13.96010 -13.74986 -13.55199 -13.53919 -13.07411 -12.94109 -12.88342 -12.68624 -12.37086 -11.95008 -11.90149 -11.60053 -11.56678 -11.42815 -11.21894 -11.19857 -11.12852 -10.93672 -10.65335 -10.34018 -9.99604 -9.82980 -9.65995 -9.50032 -8.88015 -8.78335 -8.73847 -8.34933 -8.08061 -8.01427 -6.54017 -6.46498 -4.16698 0.34162 0.83679 1.52031 1.86197 2.00926 2.81375 3.10349 3.12697 3.19403 3.38950 3.46389 3.50027 3.93709 4.06243 4.30028 4.48227 4.56986 4.63544 4.72915 4.83734 4.94485 4.96422 5.11743 5.15637 5.17788 5.21917 5.26990 5.32227 5.33754 5.40371 5.55788 5.59351 5.69877 5.77206 5.82269 5.89733 6.00200 6.04619 6.07014 6.11152 6.21722 6.26527 6.35480 6.37902 6.43242 6.58494 6.63826 6.77807 6.81982 6.84801 7.02382 7.12600 7.44094 7.58109 7.86363 8.15826 8.76504 8.99828 10.56789 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.002355 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.606782 B =11888.812209 C =13600.254805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.181 3.819 3 H 0.105 0.895 4 N -0.734 5.734 5 C 0.555 3.445 6 O -0.508 6.508 7 C -0.177 4.177 8 C -0.061 4.061 9 C -0.186 4.186 10 C -0.077 4.077 11 C -0.152 4.152 12 C -0.056 4.056 13 S 0.185 5.815 14 C -0.595 4.595 15 H 0.090 0.910 16 C 0.083 3.917 17 N -0.858 5.858 18 Si 0.919 3.081 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.268 1.268 22 C -0.067 4.067 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.048 4.048 27 C -0.111 4.111 28 C -0.115 4.115 29 C -0.118 4.118 30 C -0.103 4.103 31 C -0.042 4.042 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.275 0.725 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 -13.186 -18.827 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 H 0.123 0.877 4 N -0.389 5.389 5 C 0.344 3.656 6 O -0.384 6.384 7 C -0.192 4.192 8 C -0.081 4.081 9 C -0.211 4.211 10 C -0.099 4.099 11 C -0.177 4.177 12 C -0.176 4.176 13 S 0.450 5.550 14 C -0.742 4.742 15 H 0.108 0.892 16 C -0.128 4.128 17 N -0.490 5.490 18 Si 0.744 3.256 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.068 4.068 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.049 4.049 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.136 4.136 30 C -0.121 4.121 31 C -0.042 4.042 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.618 -10.895 -19.526 22.512 hybrid contribution 1.193 -1.272 1.916 2.590 sum -1.425 -12.167 -17.610 21.452 Atomic orbital electron populations 1.22175 0.94105 1.02395 1.02893 1.19697 0.94082 0.97429 0.81228 0.87709 1.46008 1.70193 1.11171 1.11566 1.18317 0.77576 0.86952 0.82714 1.90780 1.51112 1.13716 1.82841 1.19079 1.13146 0.93487 0.93503 1.20872 0.97083 0.92797 0.97378 1.20628 1.07481 0.98954 0.94026 1.21088 0.97391 0.94138 0.97275 1.21429 1.03172 0.94281 0.98825 1.23093 0.97048 1.03446 0.94051 1.84734 1.61978 0.89624 1.18694 1.24046 1.41976 0.98949 1.09204 0.89191 1.25095 0.94138 0.95073 0.98446 1.69973 1.38606 1.02590 1.37863 0.86153 0.79281 0.78504 0.81644 1.19867 1.20473 1.19240 1.19876 0.98519 0.94223 0.94146 1.20582 1.00197 0.94031 0.98577 1.20801 0.99085 1.00063 0.92721 1.20995 1.00570 0.93213 0.98263 1.18062 0.99527 0.93889 0.93371 1.20991 1.00493 0.94678 0.96706 1.20876 0.99119 0.94693 0.98579 1.20892 0.99517 1.00258 0.92911 1.21213 0.99042 0.93264 0.98551 1.17838 0.99880 0.93790 0.92716 0.91094 0.91678 0.92384 0.76967 0.87359 0.87069 0.87004 0.84404 0.91531 0.86142 0.85829 0.85663 0.85696 0.86049 0.85798 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.50 37.16 0.35 -1.52 16 2 C 0.18 2.38 2.34 -69.08 -0.16 2.22 16 3 H 0.11 1.60 5.83 -51.93 -0.30 1.29 16 4 N -0.73 -10.54 4.87 -56.01 -0.27 -10.81 16 5 C 0.55 10.64 7.75 -12.52 -0.10 10.54 16 6 O -0.51 -11.63 13.33 5.27 0.07 -11.56 16 7 C -0.18 -3.47 5.89 -104.75 -0.62 -4.09 16 8 C -0.06 -0.96 9.53 -39.20 -0.37 -1.33 16 9 C -0.19 -2.84 10.02 -39.58 -0.40 -3.24 16 10 C -0.08 -1.30 10.03 -39.54 -0.40 -1.70 16 11 C -0.15 -3.16 9.20 -39.38 -0.36 -3.52 16 12 C -0.06 -1.28 6.14 -38.39 -0.24 -1.52 16 13 S 0.19 4.94 18.56 -107.50 -2.00 2.94 16 14 C -0.60 -16.37 8.97 30.94 0.28 -16.09 16 15 H 0.09 2.35 5.05 -52.49 -0.27 2.09 16 16 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 17 N -0.86 -24.65 13.22 55.49 0.73 -23.91 16 18 Si 0.92 20.66 29.55 -169.99 -5.02 15.64 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 C -0.07 -0.79 5.05 -104.53 -0.53 -1.32 16 23 C -0.12 -1.18 9.19 -39.94 -0.37 -1.54 16 24 C -0.11 -0.97 9.95 -39.93 -0.40 -1.37 16 25 C -0.11 -1.02 9.77 -39.49 -0.39 -1.41 16 26 C -0.05 -0.52 5.74 -106.83 -0.61 -1.13 16 27 C -0.11 -1.00 9.77 -39.49 -0.39 -1.39 16 28 C -0.11 -1.01 9.95 -39.93 -0.40 -1.40 16 29 C -0.12 -1.15 9.95 -39.93 -0.40 -1.54 16 30 C -0.10 -1.16 9.28 -39.48 -0.37 -1.53 16 31 C -0.04 -0.50 5.74 -106.84 -0.61 -1.11 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.39 4.58 4.41 -40.82 -0.18 4.40 16 36 H 0.11 1.28 6.40 -52.49 -0.34 0.94 16 37 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.14 2.99 5.11 -52.49 -0.27 2.73 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 1.03 6.08 -52.49 -0.32 0.71 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 46 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 47 H 0.13 1.46 6.44 -52.49 -0.34 1.12 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -32.57 398.56 -12.41 -44.98 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.37 Total: 8.50 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -6.56 Total: -31.79 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.46 Total: -34.73 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.57 -12.41 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013019220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.883 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds