Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08997 * 109.47062 * 2 1 4 4 N 1.46496 * 109.46670 * 240.00468 * 2 1 3 5 5 C 1.34778 * 120.00379 * 89.01851 * 4 2 1 6 6 O 1.21615 * 119.99708 * 359.97438 * 5 4 2 7 7 C 1.47425 * 120.00506 * 179.97438 * 5 4 2 8 8 C 1.39677 * 120.21212 * 359.97438 * 7 5 4 9 9 C 1.37804 * 119.93838 * 179.97438 * 8 7 5 10 10 C 1.38658 * 120.38253 * 0.02640 * 9 8 7 11 11 C 1.37918 * 120.43731 * 359.97438 * 10 9 8 12 12 C 1.39110 * 120.04783 * 359.71392 * 11 10 9 13 13 S 1.76202 * 120.19013 * 180.28075 * 12 11 10 14 14 C 1.76196 * 99.99748 * 7.30534 * 13 12 11 15 15 H 1.07997 * 120.00467 * 355.68845 * 14 13 12 16 16 C 1.38813 * 119.99814 * 175.68901 * 14 13 12 17 17 N 1.31555 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99776 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47475 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46924 * 120.00076 * 18 16 14 21 21 H 1.48505 * 109.47042 * 239.99697 * 18 16 14 22 22 C 1.50698 * 109.47129 * 120.00516 * 2 1 3 23 23 C 1.36129 * 120.17402 * 92.43643 * 22 2 1 24 24 C 1.39332 * 120.98959 * 180.02562 * 23 22 2 25 25 C 1.36132 * 120.98835 * 359.97438 * 24 23 22 26 26 C 1.40502 * 119.65174 * 0.02562 * 25 24 23 27 27 C 1.40547 * 121.28568 * 179.97438 * 26 25 24 28 28 C 1.36087 * 119.65132 * 180.02562 * 27 26 25 29 29 C 1.39384 * 120.99716 * 0.02615 * 28 27 26 30 30 C 1.36092 * 120.99144 * 359.94840 * 29 28 27 31 31 C 1.40497 * 120.17297 * 272.45331 * 22 2 1 32 32 H 1.08991 * 109.47253 * 59.99341 * 1 2 3 33 33 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46466 * 299.99400 * 1 2 3 35 35 H 0.97000 * 119.99766 * 269.01469 * 4 2 1 36 36 H 1.08003 * 120.03426 * 0.02699 * 8 7 5 37 37 H 1.08004 * 119.81120 * 179.97438 * 9 8 7 38 38 H 1.08003 * 119.78474 * 179.97438 * 10 9 8 39 39 H 1.07996 * 119.97468 * 180.02562 * 11 10 9 40 40 H 0.96999 * 119.99572 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.50064 * 0.03658 * 23 22 2 42 42 H 1.07995 * 119.50894 * 179.97438 * 24 23 22 43 43 H 1.07990 * 120.17314 * 179.72764 * 25 24 23 44 44 H 1.07998 * 120.17631 * 0.02562 * 27 26 25 45 45 H 1.08009 * 119.50100 * 179.97438 * 28 27 26 46 46 H 1.07997 * 119.50619 * 179.97438 * 29 28 27 47 47 H 1.07997 * 120.17073 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.2241 -0.0008 -2.3357 6 8 2.0040 1.1947 -2.3710 7 6 2.7159 -0.6956 -3.5394 8 6 2.9707 -2.0685 -3.5037 9 6 3.4298 -2.7123 -4.6323 10 6 3.6417 -2.0049 -5.8059 11 6 3.3953 -0.6490 -5.8587 12 6 2.9254 0.0179 -4.7319 13 16 2.6023 1.7488 -4.7972 14 6 2.8277 2.0373 -6.5207 15 1 3.1596 1.2355 -7.1636 16 6 2.5786 3.2952 -7.0523 17 7 2.1748 4.2720 -6.2691 18 14 2.8183 3.6012 -8.8794 19 1 3.2749 2.3496 -9.5352 20 1 1.5318 4.0341 -9.4817 21 1 3.8380 4.6631 -9.0739 22 6 2.0324 -0.7105 1.2304 23 6 2.3077 -2.0430 1.1866 24 6 2.7724 -2.7169 2.3141 25 6 2.9651 -2.0624 3.4920 26 6 2.6919 -0.6868 3.5757 27 6 2.8781 0.0228 4.7745 28 6 2.6024 1.3547 4.8183 29 6 2.1365 2.0288 3.6908 30 6 1.9447 1.3748 2.5128 31 6 2.2188 -0.0012 2.4288 32 1 -0.3633 0.5139 -0.8898 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3632 0.5137 0.8900 35 1 2.1936 -1.6441 -1.1681 36 1 2.8072 -2.6251 -2.5928 37 1 3.6265 -3.7738 -4.6023 38 1 4.0022 -2.5192 -6.6846 39 1 3.5626 -0.1055 -6.7768 40 1 2.0011 5.1511 -6.6405 41 1 2.1638 -2.5857 0.2640 42 1 2.9828 -3.7744 2.2526 43 1 3.3216 -2.5987 4.3589 44 1 3.2381 -0.4863 5.6564 45 1 2.7460 1.8975 5.7410 46 1 1.9250 3.0860 3.7527 47 1 1.5836 1.9102 1.6473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013019222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = 38.879473 kcal Electronic energy + Delta-G solvation = -30383.495705 eV Core-core repulsion = 26394.050999 eV Total energy + Delta-G solvation = -3989.444705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.87782 -39.49451 -37.68710 -36.83372 -35.36509 -32.79893 -32.75260 -31.10671 -30.52385 -30.28635 -29.53380 -28.85252 -25.82993 -24.43512 -23.61952 -23.23689 -22.66746 -21.94772 -20.56576 -20.03723 -18.37192 -17.61643 -17.40872 -16.90226 -16.52906 -15.83812 -15.58274 -15.18224 -14.68927 -14.60244 -14.49308 -14.18337 -14.05624 -13.96313 -13.74924 -13.55613 -13.54641 -13.08435 -12.93322 -12.88629 -12.68312 -12.37032 -11.94754 -11.90146 -11.60454 -11.56413 -11.43564 -11.22223 -11.21767 -11.13500 -10.90873 -10.65159 -10.31001 -10.00817 -9.80636 -9.63350 -9.55960 -8.87674 -8.79117 -8.73688 -8.34942 -8.07125 -8.01982 -6.53944 -6.46184 -4.16816 0.33350 0.82872 1.52137 1.85362 2.00880 2.80587 3.10327 3.11910 3.20231 3.39241 3.46471 3.50179 3.92970 4.06165 4.29378 4.48139 4.56324 4.62831 4.72206 4.83070 4.94900 4.95769 5.11554 5.15497 5.17175 5.21191 5.26563 5.32563 5.33596 5.41102 5.55785 5.58921 5.70058 5.77461 5.82153 5.89602 5.99647 6.04184 6.06619 6.10128 6.23914 6.25939 6.34863 6.37830 6.42591 6.57930 6.63153 6.77755 6.81215 6.84640 7.01557 7.12343 7.44930 7.58762 7.86532 8.16707 8.76666 9.00206 10.56984 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.002321 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.961329 B =12063.402596 C =13806.426366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.103 0.897 4 N -0.734 5.734 5 C 0.555 3.445 6 O -0.507 6.507 7 C -0.177 4.177 8 C -0.061 4.061 9 C -0.186 4.186 10 C -0.076 4.076 11 C -0.153 4.153 12 C -0.056 4.056 13 S 0.185 5.815 14 C -0.596 4.596 15 H 0.092 0.908 16 C 0.083 3.917 17 N -0.858 5.858 18 Si 0.919 3.081 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.067 4.067 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.048 4.048 27 C -0.111 4.111 28 C -0.115 4.115 29 C -0.118 4.118 30 C -0.103 4.103 31 C -0.042 4.042 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.274 0.726 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -12.895 19.316 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.121 0.879 4 N -0.390 5.390 5 C 0.344 3.656 6 O -0.384 6.384 7 C -0.192 4.192 8 C -0.081 4.081 9 C -0.211 4.211 10 C -0.099 4.099 11 C -0.178 4.178 12 C -0.176 4.176 13 S 0.450 5.550 14 C -0.743 4.743 15 H 0.109 0.891 16 C -0.128 4.128 17 N -0.490 5.490 18 Si 0.745 3.255 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.067 4.067 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.048 4.048 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.136 4.136 30 C -0.121 4.121 31 C -0.042 4.042 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.624 -10.581 20.076 22.702 hybrid contribution 0.633 -1.355 -2.081 2.563 sum 0.009 -11.936 17.994 21.593 Atomic orbital electron populations 1.22177 0.94082 1.02402 1.02948 1.19688 0.94138 0.97283 0.81213 0.87882 1.46020 1.70312 1.12051 1.10581 1.18315 0.77614 0.86880 0.82772 1.90782 1.50613 1.14169 1.82864 1.19080 1.12868 0.93682 0.93583 1.20874 0.97005 0.92819 0.97424 1.20629 1.07607 0.99089 0.93774 1.21087 0.97430 0.94159 0.97177 1.21442 1.02751 0.94529 0.99106 1.23074 0.96959 1.03328 0.94223 1.84734 1.71775 0.91486 1.07023 1.24111 1.53120 1.00121 0.96904 0.89069 1.25095 0.93187 0.94835 0.99648 1.69985 1.40606 1.02455 1.35987 0.86101 0.78314 0.78749 0.82380 1.19163 1.20230 1.20242 1.19863 0.98506 0.94200 0.94168 1.20589 1.00224 0.94004 0.98599 1.20803 0.99039 1.00060 0.92761 1.20994 1.00590 0.93167 0.98274 1.18062 0.99519 0.93875 0.93389 1.20995 1.00500 0.94638 0.96736 1.20878 0.99132 0.94683 0.98570 1.20894 0.99482 1.00272 0.92927 1.21219 0.99045 0.93241 0.98578 1.17838 0.99879 0.93758 0.92742 0.91000 0.92392 0.91704 0.76965 0.87358 0.87066 0.87004 0.84361 0.91596 0.86114 0.85817 0.85657 0.85691 0.86045 0.85796 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.50 37.16 0.35 -1.57 16 2 C 0.18 2.40 2.31 -69.08 -0.16 2.24 16 3 H 0.10 1.56 5.87 -51.93 -0.30 1.26 16 4 N -0.73 -10.56 4.91 -56.01 -0.27 -10.84 16 5 C 0.55 10.64 7.75 -12.52 -0.10 10.54 16 6 O -0.51 -11.63 13.37 5.26 0.07 -11.56 16 7 C -0.18 -3.47 5.89 -104.75 -0.62 -4.09 16 8 C -0.06 -0.96 9.53 -39.20 -0.37 -1.33 16 9 C -0.19 -2.84 10.02 -39.59 -0.40 -3.24 16 10 C -0.08 -1.30 10.03 -39.54 -0.40 -1.69 16 11 C -0.15 -3.19 9.25 -39.38 -0.36 -3.55 16 12 C -0.06 -1.27 6.14 -38.39 -0.24 -1.51 16 13 S 0.19 4.94 18.56 -107.50 -2.00 2.94 16 14 C -0.60 -16.38 9.08 30.95 0.28 -16.10 16 15 H 0.09 2.38 4.84 -52.49 -0.25 2.13 16 16 C 0.08 2.28 5.49 -17.46 -0.10 2.18 16 17 N -0.86 -24.66 13.22 55.49 0.73 -23.92 16 18 Si 0.92 20.66 29.55 -169.99 -5.02 15.64 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C -0.07 -0.78 5.05 -104.53 -0.53 -1.31 16 23 C -0.12 -1.17 9.17 -39.93 -0.37 -1.53 16 24 C -0.11 -0.96 9.95 -39.93 -0.40 -1.35 16 25 C -0.11 -1.01 9.77 -39.49 -0.39 -1.39 16 26 C -0.05 -0.51 5.74 -106.83 -0.61 -1.12 16 27 C -0.11 -0.99 9.77 -39.48 -0.39 -1.37 16 28 C -0.11 -0.99 9.95 -39.93 -0.40 -1.39 16 29 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 30 C -0.10 -1.15 9.28 -39.48 -0.37 -1.52 16 31 C -0.04 -0.49 5.74 -106.83 -0.61 -1.10 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 4.60 4.38 -40.82 -0.18 4.42 16 36 H 0.11 1.28 6.40 -52.48 -0.34 0.94 16 37 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.14 3.00 4.97 -52.49 -0.26 2.74 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 1.02 6.11 -52.49 -0.32 0.70 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.13 1.46 6.43 -52.49 -0.34 1.12 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -32.58 398.42 -12.39 -44.98 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.36 Total: 8.50 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -6.55 Total: -31.74 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.46 Total: -34.76 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.58 -12.39 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013019222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.856 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds