Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21303 * 119.99678 * 2 1 4 4 N 1.34768 * 120.00027 * 179.97438 * 2 1 3 5 5 C 1.40205 * 120.00076 * 181.66465 * 4 2 1 6 6 C 1.39573 * 120.41467 * 37.47206 * 5 4 2 7 7 O 1.35596 * 121.09969 * 359.96119 * 6 5 4 8 8 C 1.40159 * 117.80714 * 179.97438 * 6 5 4 9 9 C 1.40893 * 119.64314 * 0.02562 * 8 6 5 10 10 N 1.32072 * 120.29403 * 359.97438 * 9 8 6 11 11 C 1.32693 * 121.72171 * 359.97438 * 10 9 8 12 12 N 1.38610 * 119.31387 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00137 * 354.43120 * 12 11 10 14 14 O 1.21747 * 119.99954 * 359.97438 * 13 12 11 15 15 C 1.41756 * 119.99834 * 179.97438 * 13 12 11 16 16 H 1.07991 * 120.00078 * 359.97438 * 15 13 12 17 17 C 1.40142 * 119.99833 * 179.97438 * 15 13 12 18 18 N 1.30635 * 119.99783 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46549 * 90.00130 * 19 17 15 21 21 H 1.48501 * 109.46998 * 209.99658 * 19 17 15 22 22 H 1.48495 * 109.47334 * 330.00319 * 19 17 15 23 23 N 1.38505 * 118.42812 * 180.02562 * 9 8 6 24 24 C 1.46500 * 119.63050 * 179.97438 * 23 9 8 25 25 C 1.34342 * 120.73551 * 359.97438 * 23 9 8 26 26 O 1.21578 * 118.54501 * 179.97438 * 25 23 9 27 27 N 1.34221 * 122.90660 * 0.02562 * 25 23 9 28 28 C 1.46494 * 119.43879 * 180.02562 * 27 25 23 29 29 C 1.35107 * 121.12505 * 359.97438 * 27 25 23 30 30 O 1.21654 * 120.87059 * 180.02562 * 29 27 25 31 31 H 1.09004 * 109.47207 * 269.99945 * 1 2 3 32 32 H 1.09001 * 109.47134 * 29.99960 * 1 2 3 33 33 H 1.09001 * 109.47399 * 150.00439 * 1 2 3 34 34 H 0.97000 * 120.00677 * 1.67200 * 4 2 1 35 35 H 0.96706 * 113.99866 * 89.99177 * 7 6 5 36 36 H 0.97008 * 120.00157 * 174.42439 * 12 11 10 37 37 H 0.97001 * 119.99889 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47317 * 90.00039 * 24 23 9 39 39 H 1.09000 * 109.47138 * 210.00038 * 24 23 9 40 40 H 1.09003 * 109.46690 * 330.00107 * 24 23 9 41 41 H 1.08997 * 109.47117 * 359.97438 * 28 27 25 42 42 H 1.08999 * 109.47320 * 119.99749 * 28 27 25 43 43 H 1.09004 * 109.47179 * 239.99705 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.5824 -1.1674 0.0358 6 6 4.2702 -0.2226 0.7990 7 8 3.6053 0.7136 1.5202 8 6 5.6709 -0.2733 0.7952 9 6 6.3305 -1.2585 0.0341 10 7 5.6349 -2.1311 -0.6724 11 6 4.3083 -2.1140 -0.6918 12 7 3.6284 -3.0540 -1.4504 13 6 4.3122 -3.9004 -2.2457 14 8 5.5270 -3.8391 -2.2981 15 6 3.6169 -4.8621 -3.0211 16 1 2.5394 -4.9167 -2.9742 17 6 4.3278 -5.7419 -3.8484 18 7 5.6313 -5.6761 -3.9046 19 14 3.4117 -7.0096 -4.8696 20 1 3.0761 -6.4289 -6.1946 21 1 4.2689 -8.2076 -5.0569 22 1 2.1617 -7.3998 -4.1693 23 7 7.7152 -1.2859 0.0489 24 6 8.4280 -2.2995 -0.7325 25 6 8.4118 -0.3933 0.7719 26 8 9.6260 -0.4540 0.7565 27 7 7.8267 0.5620 1.5112 28 6 8.6607 1.4970 2.2704 29 6 6.4816 0.6767 1.5664 30 8 5.9562 1.5446 2.2376 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.6962 -2.0071 -0.0236 35 1 3.3943 0.4380 2.4228 36 1 2.6604 -3.1027 -1.4089 37 1 6.1234 -6.2853 -4.4770 38 1 8.6260 -1.9144 -1.7327 39 1 9.3715 -2.5392 -0.2421 40 1 7.8168 -3.1992 -0.8040 41 1 9.7121 1.2588 2.1096 42 1 8.4630 2.5150 1.9350 43 1 8.4275 1.4124 3.3318 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013555329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -86.269050 kcal Electronic energy + Delta-G solvation = -36061.972938 eV Core-core repulsion = 31109.958908 eV Total energy + Delta-G solvation = -4952.014030 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15582 -40.71935 -39.12935 -38.96380 -37.94685 -37.07374 -35.90632 -35.07048 -34.40474 -33.41247 -32.53098 -31.21495 -30.47908 -28.50862 -28.04158 -26.73223 -26.42202 -24.12789 -23.73493 -22.53350 -21.04907 -20.54803 -19.51970 -19.08483 -18.49777 -17.80017 -17.12365 -16.96066 -16.78548 -16.55714 -16.09121 -15.89715 -15.54069 -15.31171 -15.02595 -14.79303 -14.56155 -14.38929 -14.24193 -14.03693 -13.74308 -13.64187 -13.28708 -12.78010 -12.75275 -12.73730 -12.46245 -12.39901 -12.20760 -11.87855 -11.56360 -11.33660 -11.27562 -10.90201 -10.86964 -10.68468 -10.50487 -10.28646 -10.02351 -9.86348 -9.72411 -9.51993 -9.17142 -9.10503 -8.54514 -7.79143 -7.37975 -6.55972 -5.12003 0.80991 1.13173 2.01255 2.22118 2.68206 2.92522 2.93579 3.01158 3.02077 3.04334 3.14094 3.57825 3.89749 3.91761 4.07138 4.29923 4.32469 4.67271 4.97808 5.04822 5.08686 5.19570 5.21199 5.27415 5.32690 5.45374 5.51127 5.51588 5.65956 5.68644 5.75097 5.88302 5.95268 6.16547 6.31037 6.48417 6.56676 7.03215 7.09368 7.35472 7.36550 7.54669 7.59002 7.72189 7.75203 8.00218 8.17287 8.26707 8.59344 8.93889 10.16851 10.35211 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.008417 B = 0.003880 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.675297 B = 7215.246704 C =10421.669920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.495 3.505 3 O -0.492 6.492 4 N -0.662 5.662 5 C -0.044 4.044 6 C 0.280 3.720 7 O -0.439 6.439 8 C -0.329 4.329 9 C 0.441 3.559 10 N -0.487 5.487 11 C 0.466 3.534 12 N -0.653 5.653 13 C 0.525 3.475 14 O -0.508 6.508 15 C -0.534 4.534 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.740 5.740 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.263 1.263 23 N -0.521 5.521 24 C 0.092 3.908 25 C 0.709 3.291 26 O -0.547 6.547 27 N -0.565 5.565 28 C 0.082 3.918 29 C 0.576 3.424 30 O -0.493 6.493 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.405 0.595 35 H 0.385 0.615 36 H 0.398 0.602 37 H 0.276 0.724 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 5.217 9.500 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.282 3.718 3 O -0.364 6.364 4 N -0.312 5.312 5 C -0.145 4.145 6 C 0.223 3.777 7 O -0.248 6.248 8 C -0.341 4.341 9 C 0.203 3.797 10 N -0.210 5.210 11 C 0.225 3.775 12 N -0.295 5.295 13 C 0.333 3.667 14 O -0.384 6.384 15 C -0.568 4.568 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.368 5.368 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.187 1.187 23 N -0.246 5.246 24 C -0.049 4.049 25 C 0.411 3.589 26 O -0.421 6.421 27 N -0.309 5.309 28 C -0.059 4.059 29 C 0.369 3.631 30 O -0.366 6.366 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.242 0.758 35 H 0.243 0.757 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.677 5.989 8.627 11.127 hybrid contribution -1.769 -0.768 0.201 1.939 sum -5.446 5.221 8.828 11.613 Atomic orbital electron populations 1.21828 0.91077 1.05011 1.04700 1.20977 0.90568 0.83454 0.76755 1.90856 1.69760 1.30433 1.45382 1.43258 1.03220 1.09647 1.75044 1.18225 0.84467 1.03039 1.08787 1.17503 0.86667 0.84685 0.88839 1.85022 1.75043 1.37426 1.27308 1.20141 0.94175 1.05532 1.14246 1.18140 0.84386 0.88507 0.88702 1.67427 1.05233 1.25194 1.23184 1.18309 0.86796 0.87084 0.85325 1.45013 1.10101 1.32644 1.41747 1.17333 0.88091 0.81145 0.80142 1.90755 1.12734 1.69757 1.65186 1.19992 0.94632 1.16564 1.25656 0.91064 1.25725 0.94684 0.97304 0.95920 1.69970 1.07025 1.30854 1.28926 0.86234 0.80033 0.79681 0.80154 1.19450 1.20120 1.18664 1.44490 1.03521 1.31331 1.45262 1.22038 0.97446 0.90956 0.94451 1.15414 0.85462 0.79268 0.78729 1.90955 1.10723 1.73501 1.66888 1.46078 1.08546 1.31000 1.45317 1.21873 0.96260 0.91987 0.95752 1.17909 0.80435 0.83922 0.80818 1.90821 1.71322 1.34126 1.40336 0.88881 0.88811 0.90086 0.75837 0.75707 0.76674 0.91308 0.91088 0.89888 0.86904 0.88091 0.90551 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.30 36.00 0.37 -0.85 16 2 C 0.50 6.17 7.37 -10.99 -0.08 6.09 16 3 O -0.49 -8.57 13.66 -19.46 -0.27 -8.83 16 4 N -0.66 -7.92 4.98 -9.42 -0.05 -7.97 16 5 C -0.04 -0.70 6.28 -82.97 -0.52 -1.22 16 6 C 0.28 4.70 6.22 -38.36 -0.24 4.46 16 7 O -0.44 -6.94 8.22 -50.10 -0.41 -7.36 16 8 C -0.33 -5.85 5.90 -104.72 -0.62 -6.47 16 9 C 0.44 8.33 7.38 -155.11 -1.15 7.18 16 10 N -0.49 -10.11 6.66 -11.21 -0.07 -10.18 16 11 C 0.47 8.79 7.41 -154.93 -1.15 7.64 16 12 N -0.65 -12.41 5.33 -13.95 -0.07 -12.48 16 13 C 0.53 12.80 7.53 -14.92 -0.11 12.68 16 14 O -0.51 -14.07 13.09 5.15 0.07 -14.01 16 15 C -0.53 -12.77 9.31 -37.52 -0.35 -13.12 16 16 H 0.07 1.50 7.85 -52.49 -0.41 1.09 16 17 C 0.09 2.11 5.50 -17.35 -0.10 2.02 16 18 N -0.74 -19.38 11.73 55.56 0.65 -18.73 16 19 Si 0.92 17.53 29.56 -169.99 -5.02 12.50 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 N -0.52 -9.30 3.05 -128.26 -0.39 -9.69 16 24 C 0.09 1.56 10.13 59.85 0.61 2.17 16 25 C 0.71 12.13 8.10 -87.80 -0.71 11.42 16 26 O -0.55 -9.78 14.83 5.30 0.08 -9.70 16 27 N -0.56 -8.93 2.96 -129.78 -0.38 -9.32 16 28 C 0.08 1.00 10.00 59.84 0.60 1.60 16 29 C 0.58 9.94 7.63 -12.66 -0.10 9.84 16 30 O -0.49 -8.98 15.56 -14.96 -0.23 -9.22 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.41 3.49 7.72 -40.82 -0.32 3.18 16 35 H 0.39 4.39 9.06 45.56 0.41 4.81 16 36 H 0.40 5.92 7.20 -40.82 -0.29 5.63 16 37 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.26 7.32 -51.93 -0.38 0.88 16 40 H 0.11 2.17 7.41 -51.93 -0.38 1.79 16 41 H 0.10 1.16 6.76 -51.93 -0.35 0.81 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -36.14 370.48 -7.46 -43.60 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -3.39 Total: 12.36 kcal Atomic # 6 Polarization: 46.98 SS G_CDS: -3.54 Total: 43.44 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.32 Total: -68.37 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -0.76 Total: -49.11 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.02 Total: 12.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.14 -7.46 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013555329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.671 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds