Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47181 * 270.00548 * 3 2 1 5 5 H 1.48498 * 109.47089 * 30.00212 * 3 2 1 6 6 H 1.48499 * 109.47361 * 149.99981 * 3 2 1 7 7 C 1.37868 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00386 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00029 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47187 * 175.97925 * 9 7 2 11 11 C 1.46959 * 111.00001 * 295.67100 * 10 9 7 12 12 C 1.53051 * 109.36335 * 183.18592 * 11 10 9 13 13 N 1.46953 * 109.36657 * 301.60317 * 12 11 10 14 14 C 1.46904 * 110.99934 * 183.18821 * 13 12 11 15 15 H 1.09000 * 109.47148 * 302.62124 * 14 13 12 16 16 C 1.50699 * 109.46917 * 182.62276 * 14 13 12 17 17 O 1.20826 * 120.00078 * 329.85550 * 16 14 13 18 18 O 1.34230 * 119.99911 * 149.86267 * 16 14 13 19 19 C 1.50701 * 109.46932 * 62.62099 * 14 13 12 20 20 C 1.34237 * 126.49755 * 27.79068 * 19 14 13 21 21 N 1.36831 * 109.92877 * 179.97438 * 20 19 14 22 22 H 0.96996 * 125.06466 * 180.02562 * 21 20 19 23 23 C 1.37735 * 109.86934 * 359.97438 * 21 20 19 24 24 C 1.39122 * 133.49836 * 179.97438 * 23 21 20 25 25 C 1.37740 * 119.80078 * 179.77027 * 24 23 21 26 26 C 1.38932 * 120.65054 * 0.51135 * 25 24 23 27 27 Cl 1.73595 * 119.75156 * 179.75795 * 26 25 24 28 28 C 1.36717 * 120.49945 * 359.48834 * 26 25 24 29 29 C 1.39642 * 119.75646 * 0.24894 * 28 26 25 30 30 C 1.46959 * 110.88347 * 59.31865 * 13 12 11 31 31 C 1.46962 * 111.00004 * 59.46951 * 10 9 7 32 32 H 0.96994 * 119.99896 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.46920 * 55.98015 * 9 7 2 34 34 H 1.08995 * 109.46947 * 295.97512 * 9 7 2 35 35 H 1.09004 * 109.48370 * 63.22447 * 11 10 9 36 36 H 1.08998 * 109.49105 * 303.15941 * 11 10 9 37 37 H 1.09000 * 109.48692 * 181.63009 * 12 11 10 38 38 H 1.09000 * 109.50265 * 61.58188 * 12 11 10 39 39 H 0.96696 * 116.99977 * 179.97438 * 18 16 14 40 40 H 1.07997 * 125.03928 * 359.97438 * 20 19 14 41 41 H 1.08008 * 120.09596 * 0.02582 * 24 23 21 42 42 H 1.07994 * 119.67677 * 180.25239 * 25 24 23 43 43 H 1.07998 * 120.12281 * 180.23027 * 28 26 25 44 44 H 1.08999 * 109.48631 * 60.64877 * 30 13 12 45 45 H 1.08997 * 109.48601 * 180.71130 * 30 13 12 46 46 H 1.08997 * 109.48987 * 296.78446 * 31 10 9 47 47 H 1.09008 * 109.48474 * 56.82394 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0014 -2.5756 0.0955 11 6 3.6171 -3.1821 1.3777 12 6 4.2121 -4.5891 1.4722 13 7 3.7302 -5.3987 0.3444 14 6 4.2200 -6.7803 0.4410 15 1 5.3093 -6.7779 0.4781 16 6 3.7600 -7.5615 -0.7628 17 8 2.7204 -7.2752 -1.3077 18 8 4.5053 -8.5757 -1.2295 19 6 3.6761 -7.4196 1.6927 20 6 2.5267 -7.1096 2.3129 21 7 2.3646 -7.9009 3.4174 22 1 1.6094 -7.8619 4.0248 23 6 3.4330 -8.7618 3.5373 24 6 3.7660 -9.7527 4.4553 25 6 4.9342 -10.4656 4.2995 26 6 5.7910 -10.1983 3.2390 27 17 7.2604 -11.1068 3.0685 28 6 5.4830 -9.2289 2.3255 29 6 4.3008 -8.4982 2.4622 30 6 4.1145 -4.7921 -0.9378 31 6 3.5194 -3.3853 -1.0323 32 1 -0.4850 0.8400 0.0004 33 1 3.8752 -0.6192 0.8506 34 1 3.8745 -0.7437 -0.9250 35 1 2.5305 -3.2419 1.4405 36 1 3.9959 -2.5712 2.1971 37 1 3.9044 -5.0518 2.4098 38 1 5.2998 -4.5273 1.4369 39 1 4.1691 -9.0475 -2.0037 40 1 1.8327 -6.3484 1.9884 41 1 3.1084 -9.9651 5.2854 42 1 5.1888 -11.2371 5.0110 43 1 6.1516 -9.0287 1.5013 44 1 5.2011 -4.7324 -1.0007 45 1 3.7356 -5.4031 -1.7571 46 1 2.4317 -3.4473 -0.9968 47 1 3.8268 -2.9222 -1.9700 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020732481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -11.140378 kcal Electronic energy + Delta-G solvation = -32631.662332 eV Core-core repulsion = 28227.155633 eV Total energy + Delta-G solvation = -4404.506698 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76841 -40.34680 -38.60979 -37.70054 -36.24510 -36.08678 -35.35928 -32.86809 -32.10782 -30.48387 -30.25202 -29.41391 -28.27007 -26.82627 -24.40973 -23.37222 -23.07053 -22.14615 -21.91815 -21.27027 -19.65488 -19.07034 -18.25183 -18.05662 -16.92534 -16.76939 -16.60252 -16.22875 -15.84835 -15.28390 -14.81519 -14.70511 -14.39965 -14.35638 -14.28225 -14.10084 -14.07106 -13.68941 -13.13150 -12.96389 -12.88890 -12.78796 -12.61055 -12.29371 -12.12162 -12.08873 -11.65026 -11.42840 -11.26600 -11.11426 -11.07211 -10.93362 -10.84384 -10.62829 -10.48252 -10.24661 -10.15079 -9.91062 -9.80224 -9.48044 -8.59912 -8.43818 -8.26326 -7.98537 -7.21720 -6.10215 -4.10110 0.74745 1.12339 1.96329 2.07168 2.39063 2.82972 2.95671 3.27196 3.34897 3.37946 3.45819 3.94401 4.34476 4.39146 4.55195 4.70124 4.82604 4.91873 5.04744 5.05544 5.19127 5.22339 5.22814 5.35802 5.41718 5.43619 5.53854 5.65588 5.74980 5.84212 5.88844 5.95426 6.03457 6.06835 6.21593 6.25381 6.36643 6.46149 6.52975 6.69189 6.74649 6.83398 6.90432 7.04774 7.09597 7.18933 7.21912 7.55308 7.92318 8.03138 8.07113 8.44913 8.93779 9.52462 11.02560 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.002249 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.618408 B =12449.146008 C =12934.151650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.153 3.847 10 N -0.537 5.537 11 C 0.064 3.936 12 C 0.062 3.938 13 N -0.516 5.516 14 C 0.178 3.822 15 H 0.076 0.924 16 C 0.485 3.515 17 O -0.488 6.488 18 O -0.518 6.518 19 C -0.179 4.179 20 C 0.113 3.887 21 N -0.590 5.590 22 H 0.421 0.579 23 C 0.097 3.903 24 C -0.112 4.112 25 C -0.096 4.096 26 C -0.057 4.057 27 Cl -0.078 7.078 28 C -0.057 4.057 29 C -0.081 4.081 30 C 0.052 3.948 31 C 0.066 3.934 32 H 0.263 0.737 33 H 0.030 0.970 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.408 0.592 40 H 0.188 0.812 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.405 -22.688 7.453 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.026 3.974 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.065 4.065 13 N -0.243 5.243 14 C 0.067 3.933 15 H 0.094 0.906 16 C 0.325 3.675 17 O -0.373 6.373 18 O -0.330 6.330 19 C -0.187 4.187 20 C -0.015 4.015 21 N -0.192 5.192 22 H 0.259 0.741 23 C -0.011 4.011 24 C -0.133 4.133 25 C -0.115 4.115 26 C -0.085 4.085 27 Cl -0.049 7.049 28 C -0.077 4.077 29 C -0.087 4.087 30 C -0.076 4.076 31 C -0.062 4.062 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.266 0.734 40 H 0.205 0.795 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.122 -22.316 7.686 25.681 hybrid contribution -0.245 0.614 -0.321 0.734 sum 9.878 -21.702 7.364 24.956 Atomic orbital electron populations 1.69934 1.06341 1.26919 1.50521 1.24973 0.94679 0.99156 0.94269 0.86821 0.80392 0.83684 0.78622 1.20240 1.21392 1.18839 1.21714 0.90620 0.94772 1.51697 0.90402 1.20179 0.94725 0.85609 0.96874 1.62639 1.58356 1.03810 1.01301 1.21949 0.99806 0.91753 0.92980 1.22300 0.97795 0.93755 0.92645 1.61955 1.59718 0.98453 1.04132 1.19123 0.98325 0.88809 0.87015 0.90635 1.23234 0.81984 0.78140 0.84171 1.90749 1.23491 1.65625 1.57483 1.84529 1.53856 1.45516 1.49073 1.19364 0.97867 1.02302 0.99142 1.21982 0.97920 0.95108 0.86444 1.41906 1.20416 1.31501 1.25352 0.74117 1.18274 0.89647 0.95273 0.97880 1.19936 0.98069 0.96150 0.99162 1.20631 0.93276 1.00265 0.97366 1.20219 0.90647 0.98471 0.99169 1.98359 1.35062 1.73877 1.97590 1.20116 0.95601 0.93694 0.98253 1.18784 0.95227 0.98522 0.96137 1.22407 0.97993 0.96787 0.90398 1.21910 0.99585 0.90079 0.94657 0.92737 0.95225 0.95771 0.92653 0.91176 0.90569 0.94297 0.73361 0.79540 0.85229 0.84768 0.84785 0.94546 0.90466 0.92314 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.14 27.55 -169.99 -4.68 16.46 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.10 6.43 56.52 0.36 -5.73 16 7 C -0.55 -14.96 8.23 -34.44 -0.28 -15.24 16 8 H 0.08 2.32 6.06 -52.48 -0.32 2.00 16 9 C 0.15 3.59 4.23 -4.97 -0.02 3.57 16 10 N -0.54 -10.86 4.92 -235.90 -1.16 -12.02 16 11 C 0.06 1.17 5.32 -3.77 -0.02 1.15 16 12 C 0.06 0.91 5.29 -3.77 -0.02 0.89 16 13 N -0.52 -7.64 3.96 -229.28 -0.91 -8.55 16 14 C 0.18 2.27 2.48 -70.01 -0.17 2.10 16 15 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 16 C 0.48 6.38 6.34 36.01 0.23 6.61 16 17 O -0.49 -7.96 16.00 -18.75 -0.30 -8.26 16 18 O -0.52 -5.21 13.42 -39.26 -0.53 -5.74 16 19 C -0.18 -2.14 4.49 -102.71 -0.46 -2.60 16 20 C 0.11 1.24 9.96 -16.73 -0.17 1.08 16 21 N -0.59 -5.15 6.07 -10.64 -0.06 -5.21 16 22 H 0.42 2.41 8.96 -40.82 -0.37 2.04 16 23 C 0.10 0.95 7.28 -83.97 -0.61 0.34 16 24 C -0.11 -0.91 10.07 -39.44 -0.40 -1.31 16 25 C -0.10 -0.79 9.79 -39.51 -0.39 -1.18 16 26 C -0.06 -0.55 6.28 -39.87 -0.25 -0.80 16 27 Cl -0.08 -0.70 28.93 -51.86 -1.50 -2.20 16 28 C -0.06 -0.60 9.81 -39.61 -0.39 -0.99 16 29 C -0.08 -0.91 6.35 -105.14 -0.67 -1.58 16 30 C 0.05 0.83 5.20 -3.77 -0.02 0.81 16 31 C 0.07 1.28 5.24 -3.77 -0.02 1.26 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 34 H 0.02 0.57 7.77 -51.93 -0.40 0.17 16 35 H 0.06 1.15 6.92 -51.93 -0.36 0.79 16 36 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.08 1.00 6.20 -51.93 -0.32 0.68 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.41 2.43 9.10 45.56 0.41 2.84 16 40 H 0.19 2.12 8.01 -52.49 -0.42 1.70 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.24 5.89 -51.93 -0.31 0.94 16 46 H 0.06 1.32 6.48 -51.93 -0.34 0.99 16 47 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -33.12 392.74 -11.54 -44.66 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.33 Total: 5.24 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.76 Total: -3.97 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -1.36 Total: -52.10 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.83 Total: -14.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.68 Total: 16.46 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.12 -11.54 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020732481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.519 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds