Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48503 * 109.46957 * 269.99672 * 3 2 1 5 5 H 1.48501 * 109.47033 * 29.99456 * 3 2 1 6 6 H 1.48498 * 109.47338 * 149.99925 * 3 2 1 7 7 C 1.37873 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00120 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00340 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47702 * 184.98592 * 9 7 2 11 11 C 1.46953 * 110.99844 * 295.19712 * 10 9 7 12 12 C 1.53053 * 109.36329 * 183.18406 * 11 10 9 13 13 N 1.46947 * 109.36565 * 301.59350 * 12 11 10 14 14 C 1.46905 * 111.00321 * 183.18622 * 13 12 11 15 15 H 1.08993 * 109.46702 * 300.00209 * 14 13 12 16 16 C 1.50697 * 109.46523 * 60.00099 * 14 13 12 17 17 O 1.20821 * 120.00460 * 0.02562 * 16 14 13 18 18 O 1.34234 * 119.99875 * 179.97438 * 16 14 13 19 19 C 1.50699 * 109.47340 * 180.02562 * 14 13 12 20 20 C 1.34243 * 126.49504 * 339.98067 * 19 14 13 21 21 N 1.36831 * 109.92691 * 180.02562 * 20 19 14 22 22 H 0.96999 * 125.06527 * 179.97438 * 21 20 19 23 23 C 1.37723 * 109.86790 * 0.24361 * 21 20 19 24 24 C 1.39128 * 133.49075 * 179.76259 * 23 21 20 25 25 C 1.37741 * 119.79495 * 179.97438 * 24 23 21 26 26 C 1.38926 * 120.65452 * 0.02562 * 25 24 23 27 27 Cl 1.73602 * 119.75104 * 180.02562 * 26 25 24 28 28 C 1.36730 * 120.50317 * 359.56802 * 26 25 24 29 29 C 1.39636 * 119.74752 * 0.64940 * 28 26 25 30 30 C 1.46965 * 110.87795 * 59.32190 * 13 12 11 31 31 C 1.46955 * 110.99454 * 58.99108 * 10 9 7 32 32 H 0.96998 * 120.00628 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.47274 * 64.98398 * 9 7 2 34 34 H 1.09007 * 109.47039 * 304.98722 * 9 7 2 35 35 H 1.08995 * 109.49550 * 63.21276 * 11 10 9 36 36 H 1.08998 * 109.48964 * 303.14813 * 11 10 9 37 37 H 1.09008 * 109.48906 * 181.62864 * 12 11 10 38 38 H 1.09001 * 109.50738 * 61.57253 * 12 11 10 39 39 H 0.96694 * 117.00205 * 180.02562 * 18 16 14 40 40 H 1.07997 * 125.04065 * 0.03900 * 20 19 14 41 41 H 1.07997 * 120.10027 * 359.97006 * 24 23 21 42 42 H 1.07999 * 119.67107 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.12286 * 179.97438 * 28 26 25 44 44 H 1.08997 * 109.48560 * 60.64833 * 30 13 12 45 45 H 1.09003 * 109.48523 * 180.71039 * 30 13 12 46 46 H 1.09002 * 109.49310 * 296.77872 * 31 10 9 47 47 H 1.08998 * 109.49119 * 56.84692 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 7 4.0014 -2.5736 -0.1187 11 6 3.6259 -3.3699 1.0579 12 6 4.2210 -4.7742 0.9313 13 7 3.7307 -5.4017 -0.3038 14 6 4.2206 -6.7815 -0.4237 15 1 5.3103 -6.7798 -0.4414 16 6 3.7383 -7.5897 0.7532 17 8 3.0563 -7.0698 1.6043 18 8 4.0657 -8.8874 0.8555 19 6 3.6989 -7.3906 -1.6996 20 6 2.6412 -6.9698 -2.4111 21 7 2.4694 -7.7691 -3.5083 22 1 1.7699 -7.6620 -4.1718 23 6 3.4339 -8.7520 -3.5271 24 6 3.7118 -9.8044 -4.3935 25 6 4.7763 -10.6399 -4.1363 26 6 5.5771 -10.4431 -3.0182 27 17 6.9131 -11.5099 -2.7170 28 6 5.3267 -9.4100 -2.1583 29 6 4.2497 -8.5543 -2.3983 30 6 4.1062 -4.6054 -1.4805 31 6 3.5111 -3.2010 -1.3539 32 1 -0.4851 0.8400 -0.0004 33 1 3.8745 -0.7591 0.9325 34 1 3.8752 -0.6048 -0.8409 35 1 2.5399 -3.4393 1.1186 36 1 4.0109 -2.8917 1.9585 37 1 3.9197 -5.3756 1.7891 38 1 5.3085 -4.7071 0.8981 39 1 3.7329 -9.3646 1.6278 40 1 2.0182 -6.1254 -2.1555 41 1 3.0948 -9.9658 -5.2650 42 1 4.9899 -11.4565 -4.8100 43 1 5.9529 -9.2630 -1.2908 44 1 5.1923 -4.5361 -1.5412 45 1 3.7212 -5.0837 -2.3812 46 1 2.4237 -3.2685 -1.3207 47 1 3.8123 -2.5997 -2.2116 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020732484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = -4.222351 kcal Electronic energy + Delta-G solvation = -32706.035295 eV Core-core repulsion = 28301.828585 eV Total energy + Delta-G solvation = -4404.206710 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78424 -40.33730 -38.61316 -37.67736 -36.22689 -36.10224 -35.34682 -32.84550 -32.07843 -30.49066 -30.22265 -29.37207 -28.26215 -26.85938 -24.37864 -23.41113 -22.92219 -22.09111 -21.90562 -21.26355 -19.74433 -19.08845 -18.30030 -17.88332 -16.96406 -16.78969 -16.58689 -16.20778 -15.62450 -15.52766 -14.80230 -14.68073 -14.43258 -14.30873 -14.25652 -14.07379 -14.04171 -13.66289 -13.14419 -12.95745 -12.82773 -12.72753 -12.59286 -12.27409 -12.12159 -12.07427 -11.62069 -11.40702 -11.21958 -11.12569 -11.07573 -10.96814 -10.85236 -10.55011 -10.48496 -10.23289 -10.03235 -9.88781 -9.71074 -9.46081 -8.59160 -8.41397 -8.23544 -7.95047 -7.19766 -6.09981 -4.09569 0.76779 1.14675 1.98270 2.08859 2.41180 2.84627 2.93224 3.26941 3.35176 3.39212 3.48782 3.95947 4.36709 4.39649 4.53038 4.70748 4.83691 4.95437 5.06344 5.07673 5.20192 5.23343 5.24383 5.37419 5.42765 5.43883 5.58378 5.67837 5.80522 5.88051 5.93556 5.96156 6.05892 6.11540 6.23348 6.28940 6.37845 6.49058 6.61580 6.71125 6.77009 6.85589 6.91522 7.05861 7.13567 7.21244 7.24996 7.56224 7.94303 8.05235 8.09669 8.45442 8.94167 9.53016 11.02849 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.002235 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.176186 B =12523.745621 C =13136.781962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.155 3.845 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.046 3.954 13 N -0.517 5.517 14 C 0.175 3.825 15 H 0.081 0.919 16 C 0.486 3.514 17 O -0.490 6.490 18 O -0.513 6.513 19 C -0.176 4.176 20 C 0.102 3.898 21 N -0.590 5.590 22 H 0.421 0.579 23 C 0.096 3.904 24 C -0.114 4.114 25 C -0.095 4.095 26 C -0.059 4.059 27 Cl -0.079 7.079 28 C -0.050 4.050 29 C -0.076 4.076 30 C 0.055 3.945 31 C 0.064 3.936 32 H 0.263 0.737 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.032 0.968 39 H 0.407 0.593 40 H 0.188 0.812 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 -23.162 -7.766 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.028 3.972 10 N -0.262 5.262 11 C -0.062 4.062 12 C -0.081 4.081 13 N -0.244 5.244 14 C 0.065 3.935 15 H 0.099 0.901 16 C 0.326 3.674 17 O -0.376 6.376 18 O -0.325 6.325 19 C -0.184 4.184 20 C -0.025 4.025 21 N -0.192 5.192 22 H 0.259 0.741 23 C -0.011 4.011 24 C -0.135 4.135 25 C -0.115 4.115 26 C -0.087 4.087 27 Cl -0.050 7.050 28 C -0.070 4.070 29 C -0.082 4.082 30 C -0.072 4.072 31 C -0.065 4.065 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.265 0.735 40 H 0.204 0.796 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.789 -22.721 -7.907 25.973 hybrid contribution -0.223 0.671 0.244 0.748 sum 9.566 -22.050 -7.663 25.228 Atomic orbital electron populations 1.69927 1.06349 1.26924 1.50519 1.24971 0.94674 0.99156 0.94279 0.86811 0.80418 0.83698 0.78531 1.20282 1.21378 1.18919 1.21704 0.90623 0.94741 1.51695 0.90448 1.20146 0.94692 0.85665 0.96709 1.62643 1.58315 1.03779 1.01436 1.21906 0.99949 0.90544 0.93813 1.22595 0.96857 0.96533 0.92088 1.61888 1.59853 0.98481 1.04178 1.19141 0.98134 0.88886 0.87330 0.90149 1.23214 0.77232 0.80413 0.86503 1.90697 1.34878 1.70780 1.41208 1.84537 1.72815 1.24388 1.50726 1.19417 1.00663 0.99760 0.98523 1.21999 0.97993 0.95951 0.86589 1.41884 1.27720 1.25470 1.24119 0.74150 1.18279 0.92122 0.92991 0.97708 1.19922 0.99384 0.94548 0.99627 1.20620 0.94468 0.99903 0.96517 1.20221 0.93844 0.95893 0.98739 1.98357 1.45910 1.64925 1.95840 1.20086 0.96166 0.92260 0.98455 1.18713 0.96728 0.97181 0.95548 1.22451 0.98677 0.94099 0.91965 1.21949 0.99332 0.91537 0.93641 0.92740 0.95512 0.95738 0.92623 0.91306 0.88554 0.95012 0.73465 0.79558 0.85301 0.84839 0.84865 0.94372 0.90374 0.92531 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.24 27.37 -169.99 -4.65 16.58 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.19 6.69 56.52 0.38 -5.81 16 7 C -0.55 -15.00 8.21 -34.44 -0.28 -15.28 16 8 H 0.08 2.31 6.07 -52.48 -0.32 2.00 16 9 C 0.15 3.66 4.21 -4.98 -0.02 3.63 16 10 N -0.54 -10.96 4.92 -235.91 -1.16 -12.12 16 11 C 0.07 1.30 5.32 -3.77 -0.02 1.28 16 12 C 0.05 0.75 5.21 -3.77 -0.02 0.73 16 13 N -0.52 -7.68 4.00 -229.27 -0.92 -8.59 16 14 C 0.18 2.20 2.50 -70.02 -0.18 2.03 16 15 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 16 C 0.49 6.24 7.32 36.00 0.26 6.51 16 17 O -0.49 -7.83 14.59 -18.75 -0.27 -8.11 16 18 O -0.51 -5.01 13.34 -39.27 -0.52 -5.53 16 19 C -0.18 -2.04 4.68 -102.71 -0.48 -2.52 16 20 C 0.10 1.08 9.25 -16.73 -0.15 0.93 16 21 N -0.59 -5.02 6.07 -10.64 -0.06 -5.08 16 22 H 0.42 2.34 8.96 -40.82 -0.37 1.97 16 23 C 0.10 0.93 7.28 -83.97 -0.61 0.32 16 24 C -0.11 -0.91 10.08 -39.43 -0.40 -1.31 16 25 C -0.10 -0.78 9.79 -39.51 -0.39 -1.17 16 26 C -0.06 -0.56 6.28 -39.87 -0.25 -0.82 16 27 Cl -0.08 -0.71 28.93 -51.86 -1.50 -2.21 16 28 C -0.05 -0.52 9.81 -39.61 -0.39 -0.91 16 29 C -0.08 -0.84 6.35 -105.14 -0.67 -1.50 16 30 C 0.06 0.81 4.98 -3.76 -0.02 0.79 16 31 C 0.06 1.18 5.24 -3.77 -0.02 1.16 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.03 0.65 7.52 -51.93 -0.39 0.26 16 34 H 0.02 0.58 7.30 -51.93 -0.38 0.20 16 35 H 0.06 1.26 6.78 -51.93 -0.35 0.90 16 36 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 37 H 0.10 1.60 5.30 -51.92 -0.28 1.32 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.41 2.35 9.10 45.56 0.41 2.76 16 40 H 0.19 2.04 7.34 -52.49 -0.39 1.65 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.99 5.09 -51.93 -0.26 0.73 16 46 H 0.06 1.19 6.62 -51.93 -0.34 0.84 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -33.14 389.28 -11.38 -44.52 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.20 Total: 5.23 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.73 Total: -4.20 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -1.37 Total: -52.15 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.80 Total: -13.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.65 Total: 16.58 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.14 -11.38 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020732484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.299 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds