Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99588 * 2 1 4 4 H 1.48499 * 109.47267 * 269.99783 * 3 2 1 5 5 H 1.48505 * 109.47062 * 29.99963 * 3 2 1 6 6 H 1.48496 * 109.46947 * 149.99606 * 3 2 1 7 7 C 1.37877 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.46882 * 180.02562 * 9 7 2 11 11 C 1.46963 * 110.99595 * 66.17766 * 10 9 7 12 12 C 1.53056 * 109.35944 * 183.16796 * 11 10 9 13 13 N 1.46956 * 109.38342 * 301.62902 * 12 11 10 14 14 C 1.46899 * 111.00293 * 183.17592 * 13 12 11 15 15 H 1.08993 * 109.47127 * 300.00706 * 14 13 12 16 16 C 1.50708 * 109.46572 * 60.00072 * 14 13 12 17 17 O 1.20820 * 120.00145 * 0.02562 * 16 14 13 18 18 O 1.34224 * 119.99739 * 179.97438 * 16 14 13 19 19 C 1.50699 * 109.47316 * 180.02562 * 14 13 12 20 20 C 1.34223 * 126.50144 * 340.02484 * 19 14 13 21 21 N 1.36858 * 109.92733 * 179.97438 * 20 19 14 22 22 H 0.97000 * 125.06459 * 179.97438 * 21 20 19 23 23 C 1.37690 * 109.87055 * 0.02562 * 21 20 19 24 24 C 1.39122 * 133.49027 * 179.97438 * 23 21 20 25 25 C 1.37862 * 119.76592 * 179.24482 * 24 23 21 26 26 Cl 1.73602 * 119.67988 * 180.22904 * 25 24 23 27 27 C 1.38936 * 120.63171 * 0.63040 * 25 24 23 28 28 C 1.36607 * 120.52136 * 359.62243 * 27 25 24 29 29 C 1.39634 * 119.78195 * 359.97438 * 28 27 25 30 30 C 1.46962 * 110.87987 * 59.31148 * 13 12 11 31 31 C 1.46956 * 111.00102 * 189.99751 * 10 9 7 32 32 H 0.96996 * 120.00421 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.47655 * 60.00120 * 9 7 2 34 34 H 1.08997 * 109.47272 * 299.99809 * 9 7 2 35 35 H 1.08992 * 109.47287 * 63.21185 * 11 10 9 36 36 H 1.08994 * 109.50466 * 303.13858 * 11 10 9 37 37 H 1.09002 * 109.48813 * 181.65179 * 12 11 10 38 38 H 1.09002 * 109.48870 * 61.61068 * 12 11 10 39 39 H 0.96701 * 117.00070 * 180.02562 * 18 16 14 40 40 H 1.08000 * 125.03264 * 359.97438 * 20 19 14 41 41 H 1.08000 * 120.11390 * 0.02562 * 24 23 21 42 42 H 1.08003 * 119.73715 * 179.60097 * 27 25 24 43 43 H 1.07994 * 120.11165 * 180.02562 * 28 27 25 44 44 H 1.09001 * 109.48625 * 60.64585 * 30 13 12 45 45 H 1.09003 * 109.48941 * 180.69193 * 30 13 12 46 46 H 1.09002 * 109.48806 * 56.84348 * 31 10 9 47 47 H 1.09003 * 109.49203 * 296.77991 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 7 4.0014 -2.5788 0.0010 11 6 3.6550 -3.2597 -1.2545 12 6 4.1119 -4.7187 -1.1831 13 7 5.5612 -4.7649 -0.9444 14 6 6.0510 -6.1498 -0.9444 15 1 5.5490 -6.7127 -0.1576 16 6 5.7608 -6.7851 -2.2799 17 8 5.2036 -6.1493 -3.1430 18 8 6.1222 -8.0570 -2.5106 19 6 7.5374 -6.1570 -0.6966 20 6 8.3806 -5.1270 -0.8692 21 7 9.6542 -5.5071 -0.5429 22 1 10.4356 -4.9340 -0.5876 23 6 9.6615 -6.8246 -0.1428 24 6 10.6634 -7.6899 0.2848 25 6 10.3449 -8.9833 0.6404 26 17 11.5960 -10.0594 1.1794 27 6 9.0337 -9.4361 0.5636 28 6 8.0359 -8.6040 0.1414 29 6 8.3352 -7.2877 -0.2157 30 6 5.9071 -4.0840 0.3112 31 6 5.4507 -2.6249 0.2397 32 1 -0.4850 0.8400 -0.0004 33 1 3.8746 -0.6798 0.8911 34 1 3.8753 -0.6802 -0.8888 35 1 4.1533 -2.7629 -2.0868 36 1 2.5757 -3.2235 -1.4023 37 1 3.8823 -5.2181 -2.1244 38 1 3.5928 -5.2229 -0.3679 39 1 5.9152 -8.4210 -3.3823 40 1 8.0961 -4.1440 -1.2144 41 1 11.6850 -7.3459 0.3500 42 1 8.8015 -10.4541 0.8397 43 1 7.0189 -8.9628 0.0846 44 1 5.4084 -4.5807 1.1435 45 1 6.9864 -4.1209 0.4595 46 1 5.6803 -2.1255 1.1810 47 1 5.9698 -2.1210 -0.5756 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032097128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -2.657440 kcal Electronic energy + Delta-G solvation = -32345.537291 eV Core-core repulsion = 27941.398440 eV Total energy + Delta-G solvation = -4404.138851 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87587 -40.41827 -38.68803 -37.77392 -36.33117 -36.21293 -35.39260 -32.87634 -32.13992 -30.59247 -30.37591 -29.54090 -28.25828 -27.09519 -24.37231 -23.50393 -23.13710 -22.14486 -21.90365 -21.11168 -19.82463 -19.28317 -18.44002 -17.95811 -16.98328 -16.80215 -16.67075 -16.27727 -15.74071 -15.58683 -14.91386 -14.75832 -14.55067 -14.39184 -14.27923 -14.17870 -14.00761 -13.64679 -13.47530 -13.23447 -13.14298 -12.85139 -12.53024 -12.29541 -12.12758 -11.99762 -11.72017 -11.48067 -11.45934 -11.29803 -11.20335 -11.07033 -10.93758 -10.72598 -10.59224 -10.37400 -9.90494 -9.80920 -9.71865 -9.25448 -8.57410 -8.56645 -8.34930 -8.02214 -7.37862 -6.04741 -4.01985 0.63687 1.13431 1.75670 2.00135 2.30483 2.79525 2.84173 3.28431 3.35948 3.37409 3.43400 3.87534 4.32351 4.42164 4.48071 4.60077 4.74763 4.76758 4.94601 5.00485 5.08892 5.16186 5.26605 5.27329 5.30332 5.32307 5.46990 5.60763 5.64958 5.73965 5.85357 5.88111 6.01977 6.07541 6.09260 6.18223 6.24525 6.32659 6.43621 6.52530 6.64620 6.70089 6.84150 6.93775 6.99474 7.09955 7.15691 7.60642 7.86300 7.90854 8.05120 8.66232 9.03592 9.56992 11.08347 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002007 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.235902 B =13945.799564 C =14810.128031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.530 5.530 11 C 0.072 3.928 12 C 0.044 3.956 13 N -0.522 5.522 14 C 0.175 3.825 15 H 0.084 0.916 16 C 0.487 3.513 17 O -0.491 6.491 18 O -0.513 6.513 19 C -0.174 4.174 20 C 0.098 3.902 21 N -0.590 5.590 22 H 0.420 0.580 23 C 0.103 3.897 24 C -0.120 4.120 25 C -0.015 4.015 26 Cl -0.073 7.073 27 C -0.138 4.138 28 C -0.047 4.047 29 C -0.082 4.082 30 C 0.057 3.943 31 C 0.055 3.945 32 H 0.263 0.737 33 H 0.028 0.972 34 H -0.015 1.015 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.408 0.592 40 H 0.185 0.815 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.672 -19.293 -1.027 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.057 4.057 12 C -0.083 4.083 13 N -0.248 5.248 14 C 0.064 3.936 15 H 0.101 0.899 16 C 0.328 3.672 17 O -0.377 6.377 18 O -0.324 6.324 19 C -0.182 4.182 20 C -0.029 4.029 21 N -0.193 5.193 22 H 0.257 0.743 23 C -0.004 4.004 24 C -0.141 4.141 25 C -0.043 4.043 26 Cl -0.044 7.044 27 C -0.158 4.158 28 C -0.065 4.065 29 C -0.087 4.087 30 C -0.071 4.071 31 C -0.074 4.074 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.002 0.998 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.266 0.734 40 H 0.202 0.798 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 23.634 -18.812 -0.843 30.219 hybrid contribution 0.742 0.996 -0.572 1.367 sum 24.376 -17.816 -1.415 30.226 Atomic orbital electron populations 1.69892 1.06107 1.26812 1.51115 1.24907 0.94740 0.98849 0.94891 0.86852 0.80294 0.84067 0.78436 1.20371 1.21212 1.19252 1.21027 0.88727 0.94693 1.50222 0.90154 1.20156 0.97083 0.84056 0.95041 1.62147 1.10149 1.19080 1.34075 1.21981 1.01858 0.91335 0.90507 1.22634 0.84625 0.99116 1.01906 1.61947 1.16483 1.10956 1.35445 1.19146 0.91978 0.91285 0.91163 0.89852 1.23174 0.74608 0.79350 0.90097 1.90692 1.38218 1.62735 1.46067 1.84525 1.76898 1.29198 1.41808 1.19469 0.92726 0.93471 1.12506 1.21899 0.81852 1.00133 0.99059 1.41820 1.09486 1.09674 1.58299 0.74251 1.17917 0.94876 0.85225 1.02395 1.19715 0.98224 0.91623 1.04572 1.20387 0.89750 0.90933 1.03185 1.98367 1.52970 1.64458 1.88640 1.20498 0.90516 1.00859 1.03922 1.20221 0.99422 0.90979 0.95915 1.18967 0.91802 0.94176 1.03791 1.22364 1.00328 0.94968 0.89414 1.22108 0.90502 0.94306 1.00459 0.92686 0.95428 0.99783 0.95042 0.88872 0.88387 0.94302 0.73383 0.79845 0.85220 0.84942 0.84831 0.93653 0.90311 0.90816 0.95108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -14.33 9.03 -34.44 -0.31 -14.65 16 8 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 9 C 0.16 3.91 3.79 -4.98 -0.02 3.89 16 10 N -0.53 -10.88 4.70 -235.91 -1.11 -11.99 16 11 C 0.07 1.39 5.43 -3.76 -0.02 1.37 16 12 C 0.04 0.71 5.21 -3.76 -0.02 0.69 16 13 N -0.52 -7.12 4.00 -229.26 -0.92 -8.04 16 14 C 0.17 2.01 2.50 -70.01 -0.18 1.84 16 15 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.49 5.77 7.32 36.01 0.26 6.03 16 17 O -0.49 -7.34 14.59 -18.75 -0.27 -7.62 16 18 O -0.51 -4.48 13.34 -39.24 -0.52 -5.00 16 19 C -0.17 -1.80 4.68 -102.71 -0.48 -2.28 16 20 C 0.10 0.88 9.24 -16.72 -0.15 0.72 16 21 N -0.59 -4.32 6.07 -10.65 -0.06 -4.39 16 22 H 0.42 1.81 8.96 -40.82 -0.37 1.45 16 23 C 0.10 0.92 7.28 -83.99 -0.61 0.31 16 24 C -0.12 -0.98 9.84 -39.39 -0.39 -1.37 16 25 C -0.01 -0.13 6.31 -39.46 -0.25 -0.38 16 26 Cl -0.07 -0.58 28.93 -51.86 -1.50 -2.08 16 27 C -0.14 -1.14 9.75 -39.91 -0.39 -1.53 16 28 C -0.05 -0.41 10.05 -39.65 -0.40 -0.81 16 29 C -0.08 -0.81 6.35 -105.13 -0.67 -1.48 16 30 C 0.06 0.75 4.98 -3.76 -0.02 0.73 16 31 C 0.06 0.90 5.61 -3.77 -0.02 0.88 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.03 0.67 7.08 -51.93 -0.37 0.30 16 34 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.02 6.79 -51.93 -0.35 1.67 16 37 H 0.10 1.60 5.30 -51.93 -0.28 1.32 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.41 1.96 9.10 45.56 0.41 2.38 16 40 H 0.18 1.56 7.34 -52.49 -0.39 1.18 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.86 5.09 -51.93 -0.26 0.60 16 46 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -33.82 392.50 -11.47 -45.29 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.34 Total: 2.01 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.76 Total: -4.16 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -1.32 Total: -51.13 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.80 Total: -12.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.82 -11.47 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032097128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.630 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds