Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50707 * 119.99359 * 2 1 4 4 N 1.46502 * 109.46753 * 125.00293 * 3 2 1 5 5 C 1.32255 * 120.24437 * 89.99600 * 4 3 2 6 6 O 1.21721 * 122.51973 * 0.02654 * 5 4 3 7 7 C 1.46765 * 114.95106 * 180.29101 * 5 4 3 8 8 C 1.35822 * 127.96676 * 179.70172 * 7 5 4 9 9 C 1.46768 * 119.99626 * 172.60296 * 8 7 5 10 10 C 1.40116 * 120.08929 * 337.90688 * 9 8 7 11 11 C 1.37625 * 119.99108 * 179.79200 * 10 9 8 12 12 C 1.39076 * 120.17063 * 0.46620 * 11 10 9 13 13 O 1.35614 * 119.91111 * 179.76986 * 12 11 10 14 14 C 1.34755 * 117.00543 * 6.04731 * 13 12 11 15 15 H 1.08003 * 119.99490 * 354.89700 * 14 13 12 16 16 C 1.38675 * 120.00265 * 174.90135 * 14 13 12 17 17 N 1.31533 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99893 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47301 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46944 * 120.00192 * 18 16 14 21 21 H 1.48503 * 109.47086 * 239.99745 * 18 16 14 22 22 C 1.39644 * 120.17070 * 359.78496 * 12 11 10 23 23 O 1.35953 * 119.99178 * 179.97438 * 22 12 11 24 24 C 1.42895 * 116.99745 * 179.97438 * 23 22 12 25 25 C 1.38052 * 120.00975 * 359.97438 * 22 12 11 26 26 S 1.77480 * 104.06431 * 359.61666 * 7 5 4 27 27 C 1.33794 * 120.23787 * 270.02294 * 4 3 2 28 28 S 1.71199 * 126.55240 * 359.97438 * 27 4 3 29 29 H 1.07998 * 119.99363 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00326 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00426 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.46982 * 5.00450 * 3 2 1 33 33 H 1.09000 * 109.47049 * 244.99654 * 3 2 1 34 34 H 1.08002 * 120.00439 * 352.59724 * 8 7 5 35 35 H 1.08008 * 120.00546 * 359.97438 * 10 9 8 36 36 H 1.08006 * 119.91622 * 180.25427 * 11 10 9 37 37 H 0.97002 * 120.00347 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.46977 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47465 * 300.00281 * 24 23 22 40 40 H 1.09004 * 109.47255 * 60.00578 * 24 23 22 41 41 H 1.07998 * 120.08336 * 180.02562 * 25 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2273 0.8763 0.9905 6 8 4.6414 0.4233 -0.0606 7 6 5.0571 0.9523 2.1987 8 6 6.3477 0.5577 2.3521 9 6 7.0652 0.8622 3.5957 10 6 6.6351 1.9141 4.4153 11 6 7.3068 2.1951 5.5832 12 6 8.4186 1.4436 5.9482 13 8 9.0793 1.7280 7.0978 14 6 8.5361 2.6646 7.9001 15 1 7.6609 3.2095 7.5783 16 6 9.1009 2.9288 9.1388 17 7 10.1671 2.2656 9.5304 18 14 8.3482 4.2277 10.2505 19 1 7.1651 4.8263 9.5819 20 1 7.9301 3.6016 11.5305 21 1 9.3516 5.2880 10.5227 22 6 8.8564 0.3970 5.1339 23 8 9.9440 -0.3350 5.4941 24 6 10.3356 -1.3907 4.6143 25 6 8.1851 0.1056 3.9634 26 16 3.9865 1.6809 3.4122 27 6 2.6014 1.8172 2.3150 28 16 1.0567 2.4492 2.6964 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3584 2.1317 0.0896 33 1 2.6213 1.4028 -0.9314 34 1 6.8459 0.0198 1.5590 35 1 5.7747 2.5025 4.1321 36 1 6.9718 3.0036 6.2161 37 1 10.5619 2.4501 10.3970 38 1 11.2146 -1.8931 5.0183 39 1 9.5191 -2.1065 4.5195 40 1 10.5723 -0.9776 3.6338 41 1 8.5224 -0.7038 3.3330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033154806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = 15.840436 kcal Electronic energy + Delta-G solvation = -28184.662665 eV Core-core repulsion = 24057.996674 eV Total energy + Delta-G solvation = -4126.665991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58955 -40.04558 -38.04103 -37.42839 -36.87253 -34.60505 -33.40655 -32.64353 -30.08288 -29.48141 -28.13855 -27.17723 -26.44508 -25.76744 -23.72195 -22.18001 -21.56480 -20.31677 -19.98757 -18.92859 -18.59057 -17.89970 -17.81161 -16.65965 -16.40783 -16.00783 -15.81889 -15.48634 -15.43301 -14.98108 -14.73423 -14.54749 -14.30727 -13.96934 -13.89919 -13.78150 -13.22299 -12.75565 -12.67752 -12.45179 -12.23532 -12.14958 -12.09511 -11.90134 -11.60611 -11.55740 -11.33854 -11.15574 -11.04446 -10.99684 -10.69777 -10.42237 -10.30787 -9.94698 -9.81543 -9.32927 -9.08776 -8.41838 -7.94192 -7.87959 -7.17483 -6.99455 -4.40942 -0.48041 0.63679 0.69898 1.45652 1.67215 1.83039 1.91153 2.02478 2.53766 2.70054 2.89029 2.91171 2.96951 3.57451 3.68502 3.89520 4.08356 4.50209 4.55030 4.66591 4.68187 4.88715 4.99420 5.08749 5.16231 5.27680 5.30656 5.32851 5.35882 5.48934 5.57896 5.59700 5.66662 5.89042 5.96492 6.15460 6.22173 6.27456 6.41330 6.46412 6.62306 6.74190 6.87179 7.13633 7.20739 7.41672 7.79688 8.41809 9.06742 10.13702 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.002426 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.063611 B =11536.772635 C =13693.352407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 C 0.117 3.883 4 N -0.505 5.505 5 C 0.550 3.450 6 O -0.483 6.483 7 C -0.342 4.342 8 C 0.143 3.857 9 C -0.199 4.199 10 C -0.042 4.042 11 C -0.221 4.221 12 C 0.150 3.850 13 O -0.125 6.125 14 C -0.377 4.377 15 H 0.107 0.893 16 C 0.042 3.958 17 N -0.823 5.823 18 Si 0.951 3.049 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.270 1.270 22 C 0.059 3.941 23 O -0.302 6.302 24 C 0.029 3.971 25 C -0.125 4.125 26 S 0.148 5.852 27 C 0.254 3.746 28 S -0.435 6.435 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.281 0.719 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -3.727 -12.621 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.203 4.203 3 C -0.006 4.006 4 N -0.223 5.223 5 C 0.340 3.660 6 O -0.360 6.360 7 C -0.459 4.459 8 C 0.117 3.883 9 C -0.201 4.201 10 C -0.063 4.063 11 C -0.240 4.240 12 C 0.090 3.910 13 O -0.022 6.022 14 C -0.452 4.452 15 H 0.125 0.875 16 C -0.169 4.169 17 N -0.452 5.452 18 Si 0.773 3.227 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.195 1.195 22 C 0.014 3.986 23 O -0.216 6.216 24 C -0.067 4.067 25 C -0.145 4.145 26 S 0.390 5.610 27 C -0.098 4.098 28 S -0.301 6.301 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.619 -3.329 -11.250 13.989 hybrid contribution 0.278 -0.290 -1.344 1.403 sum -7.342 -3.619 -12.594 15.020 Atomic orbital electron populations 1.23976 0.95428 1.02649 0.96265 1.22897 0.96365 0.97449 1.03577 1.21274 0.92444 0.98846 0.87991 1.45276 1.13443 1.51657 1.11928 1.17951 0.80594 0.78002 0.89490 1.90863 1.73014 1.42837 1.29288 1.23418 1.00391 1.24703 0.97408 1.21877 0.88284 0.83696 0.94422 1.18011 1.01046 1.03383 0.97655 1.21068 0.97089 0.95381 0.92785 1.20770 0.99051 1.04776 0.99451 1.18896 0.91613 0.92280 0.88228 1.83953 1.43507 1.50135 1.24608 1.21875 1.12773 1.13750 0.96753 0.87547 1.25606 0.95921 0.98673 0.96658 1.70049 1.17708 1.36746 1.20683 0.85477 0.79274 0.78718 0.79204 1.18253 1.19442 1.19515 1.17989 0.91270 0.94276 0.95076 1.86245 1.43076 1.44546 1.47691 1.22961 1.00374 0.89175 0.94187 1.20773 0.96412 1.01234 0.96119 1.86503 0.97366 1.65527 1.11651 1.29019 1.04122 0.86479 0.90192 1.92804 1.04570 1.49177 1.83545 0.87851 0.87522 0.87050 0.86736 0.87532 0.83573 0.86014 0.83897 0.90854 0.88746 0.93247 0.93257 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 14.32 29.01 0.42 -0.86 16 2 C -0.18 -1.88 9.84 -36.02 -0.35 -2.24 16 3 C 0.12 1.29 5.55 -5.19 -0.03 1.26 16 4 N -0.51 -6.65 2.46 -118.92 -0.29 -6.94 16 5 C 0.55 7.71 7.61 -13.93 -0.11 7.60 16 6 O -0.48 -7.43 16.85 5.17 0.09 -7.34 16 7 C -0.34 -4.64 6.33 -37.00 -0.23 -4.87 16 8 C 0.14 1.83 9.82 -37.00 -0.36 1.47 16 9 C -0.20 -2.95 5.79 -105.06 -0.61 -3.56 16 10 C -0.04 -0.67 8.59 -39.10 -0.34 -1.01 16 11 C -0.22 -4.08 9.14 -39.49 -0.36 -4.44 16 12 C 0.15 3.16 6.67 -38.75 -0.26 2.91 16 13 O -0.12 -3.12 9.52 -13.93 -0.13 -3.26 16 14 C -0.38 -9.07 9.48 30.89 0.29 -8.77 16 15 H 0.11 2.30 5.19 -52.48 -0.27 2.02 16 16 C 0.04 0.99 5.49 -17.52 -0.10 0.89 16 17 N -0.82 -21.18 13.67 55.48 0.76 -20.42 16 18 Si 0.95 17.70 29.55 -169.99 -5.02 12.68 16 19 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 C 0.06 1.10 6.70 -39.12 -0.26 0.84 16 23 O -0.30 -5.63 10.28 -34.21 -0.35 -5.98 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 C -0.13 -1.89 8.78 -38.97 -0.34 -2.24 16 26 S 0.15 2.03 19.07 -107.50 -2.05 -0.02 16 27 C 0.25 3.56 7.58 53.62 0.41 3.97 16 28 S -0.44 -6.63 29.73 -107.50 -3.20 -9.83 16 29 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.11 0.89 7.84 -52.49 -0.41 0.48 16 31 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.11 1.20 6.73 -51.93 -0.35 0.85 16 33 H 0.11 1.09 7.50 -51.93 -0.39 0.71 16 34 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 1.78 4.71 -29.86 -0.14 1.64 16 36 H 0.14 2.56 5.62 -52.48 -0.29 2.27 16 37 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 40 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 41 H 0.13 1.52 6.28 -52.49 -0.33 1.19 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -28.49 383.76 -9.47 -37.96 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.81 Total: 5.09 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.24 Total: -7.71 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.47 Total: -27.36 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.40 Total: -16.58 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.02 Total: 12.68 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -5.25 Total: -9.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.49 -9.47 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033154806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.799 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds