Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35802 * 116.99718 * 2 1 4 4 C 1.38912 * 119.88954 * 0.02562 * 3 2 1 5 5 C 1.37690 * 120.18633 * 179.97438 * 4 3 2 6 6 C 1.40131 * 119.96233 * 0.02562 * 5 4 3 7 7 C 1.46613 * 120.11148 * 179.97438 * 6 5 4 8 8 C 1.36424 * 119.99863 * 30.82345 * 7 6 5 9 9 C 1.43209 * 120.00135 * 187.04478 * 8 7 6 10 10 N 8.91774 * 109.40197 * 2.56374 * 2 1 3 11 11 C 1.47775 * 120.00475 * 7.04760 * 8 7 6 12 12 N 1.33077 * 118.83190 * 59.97097 * 11 8 7 13 13 C 1.32573 * 121.25996 * 179.97438 * 12 11 8 14 14 N 1.38028 * 120.51804 * 180.27468 * 13 12 11 15 15 C 1.41312 * 118.95446 * 0.02562 * 13 12 11 16 16 C 1.43202 * 121.02917 * 180.02562 * 15 13 12 17 17 N 7.61625 * 61.07971 * 39.33059 * 2 1 3 18 18 C 1.42163 * 117.93132 * 0.02562 * 15 13 12 19 19 C 1.41074 * 120.67127 * 180.02562 * 18 15 13 20 20 H 1.08002 * 120.00490 * 359.97438 * 19 18 15 21 21 C 1.40288 * 119.99554 * 179.97438 * 19 18 15 22 22 N 1.30579 * 120.00161 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99708 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46945 * 89.99967 * 23 21 19 25 25 H 1.48507 * 109.46632 * 209.99783 * 23 21 19 26 26 H 1.48493 * 109.47316 * 329.99679 * 23 21 19 27 27 N 1.32352 * 118.83816 * 239.96061 * 11 8 7 28 28 C 1.40137 * 119.78010 * 0.25583 * 6 5 4 29 29 C 1.38038 * 119.80799 * 359.48985 * 28 6 5 30 30 O 1.35989 * 119.98170 * 180.23229 * 29 28 6 31 31 C 1.42898 * 116.99982 * 0.25669 * 30 29 28 32 32 H 1.08997 * 109.47178 * 299.99775 * 1 2 3 33 33 H 1.08996 * 109.47161 * 59.99815 * 1 2 3 34 34 H 1.08998 * 109.46724 * 179.97438 * 1 2 3 35 35 H 1.08001 * 119.90728 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.01540 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.00032 * 210.82816 * 7 6 5 38 38 H 0.97007 * 119.99307 * 174.54369 * 14 13 12 39 39 H 0.96997 * 120.00313 * 354.54457 * 14 13 12 40 40 H 0.97003 * 119.99888 * 179.97438 * 22 21 19 41 41 H 1.07995 * 120.09543 * 179.72461 * 28 6 5 42 42 H 1.09006 * 109.47175 * 60.00502 * 31 30 29 43 43 H 1.09006 * 109.47131 * 179.97438 * 31 30 29 44 44 H 1.08994 * 109.47520 * 299.99859 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2867 2.3735 0.0005 5 6 1.9054 3.6036 0.0011 6 6 3.3044 3.6834 0.0005 7 6 3.9666 4.9914 0.0005 8 6 3.3697 6.0581 0.6064 9 6 3.9396 7.3657 0.4782 10 7 4.3915 8.4029 0.3762 11 6 2.1350 5.8645 1.3950 12 7 2.1663 5.0491 2.4462 13 6 1.0871 4.8407 3.1875 14 7 1.1382 3.9961 4.2780 15 6 -0.1149 5.5009 2.8467 16 6 -1.3068 5.3085 3.6169 17 7 -2.2541 5.1565 4.2252 18 6 -0.1041 6.3620 1.7155 19 6 -1.2716 7.0503 1.3239 20 1 -2.1860 6.9255 1.8849 21 6 -1.2448 7.8969 0.2056 22 7 -0.1392 8.0482 -0.4725 23 14 -2.7909 8.8078 -0.3135 24 1 -2.8433 10.1243 0.3715 25 1 -2.7731 9.0152 -1.7839 26 1 -3.9853 8.0081 0.0591 27 7 1.0374 6.5081 1.0308 28 6 4.0685 2.5087 -0.0060 29 6 3.4387 1.2804 -0.0012 30 8 4.1767 0.1382 -0.0027 31 6 5.5982 0.2843 -0.0037 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2084 2.3131 0.0005 36 1 1.3127 4.5065 0.0019 37 1 4.9268 5.1106 -0.4791 38 1 0.3678 3.9100 4.8612 39 1 1.9444 3.4888 4.4613 40 1 -0.1208 8.6333 -1.2459 41 1 5.1470 2.5642 -0.0109 42 1 5.9078 0.8318 0.8866 43 1 6.0648 -0.7008 -0.0044 44 1 5.9064 0.8333 -0.8934 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039379130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = 80.450390 kcal Electronic energy + Delta-G solvation = -33996.969217 eV Core-core repulsion = 29495.326699 eV Total energy + Delta-G solvation = -4501.642519 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.127 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.48105 -39.56930 -38.38224 -37.36520 -36.23205 -35.50431 -35.03395 -34.12346 -32.99183 -31.19774 -30.26067 -29.89975 -29.09544 -27.23805 -27.06807 -26.77711 -24.45386 -22.73211 -21.98776 -21.87164 -20.66573 -18.53770 -18.23993 -17.99035 -17.25309 -17.10305 -16.86123 -16.35800 -16.00018 -15.24581 -15.20695 -15.19052 -14.79244 -14.61602 -14.43901 -14.38002 -13.92470 -13.44309 -13.21399 -13.04337 -12.91653 -12.73245 -12.50418 -12.40289 -12.21851 -12.08454 -11.95054 -11.83256 -11.74779 -11.62359 -11.40207 -11.20453 -11.15890 -11.07597 -11.05219 -10.99143 -10.59057 -10.49453 -9.76966 -9.61309 -9.24621 -8.57009 -8.43162 -7.86489 -7.47517 -7.29875 -6.86921 -5.20193 0.73763 1.57959 1.82555 2.18170 2.70511 2.90236 2.93752 3.05368 3.13358 3.31008 3.34521 3.65031 3.74547 3.76787 3.98051 4.02133 4.21313 4.38421 4.46777 4.79409 4.94029 4.97728 5.08023 5.12394 5.15314 5.22832 5.32313 5.37458 5.41277 5.45938 5.48346 5.52575 5.55905 5.76926 5.84801 5.99663 6.21199 6.33616 6.39293 6.55995 6.64230 6.76901 6.82076 6.84702 7.05681 7.11126 7.60330 7.66454 7.79347 7.92332 7.95939 8.13425 8.34300 8.58042 8.88155 9.66552 9.79544 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.003641 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.000220 B = 7689.140761 C = 8760.540346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.108 3.892 4 C -0.171 4.171 5 C -0.071 4.071 6 C -0.053 4.053 7 C -0.014 4.014 8 C 0.033 3.967 9 C 0.277 3.723 10 N -0.427 5.427 11 C 0.398 3.602 12 N -0.640 5.640 13 C 0.500 3.500 14 N -0.847 5.847 15 C -0.330 4.330 16 C 0.307 3.693 17 N -0.512 5.512 18 C 0.309 3.691 19 C -0.377 4.377 20 H 0.093 0.907 21 C 0.066 3.934 22 N -0.678 5.678 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.256 1.256 27 N -0.511 5.511 28 C -0.148 4.148 29 C 0.086 3.914 30 O -0.310 6.310 31 C 0.027 3.973 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.401 0.599 39 H 0.398 0.602 40 H 0.285 0.715 41 H 0.136 0.864 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -12.075 -3.423 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.062 3.938 4 C -0.190 4.190 5 C -0.089 4.089 6 C -0.053 4.053 7 C -0.039 4.039 8 C 0.028 3.972 9 C -0.038 4.038 10 N -0.103 5.103 11 C 0.126 3.874 12 N -0.374 5.374 13 C 0.253 3.747 14 N -0.391 5.391 15 C -0.348 4.348 16 C -0.003 4.003 17 N -0.193 5.193 18 C 0.183 3.817 19 C -0.407 4.407 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.296 5.296 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.180 1.180 27 N -0.233 5.233 28 C -0.167 4.167 29 C 0.041 3.959 30 O -0.224 6.224 31 C -0.068 4.068 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.230 0.770 39 H 0.227 0.773 40 H 0.097 0.903 41 H 0.154 0.846 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.530 -10.740 -3.400 13.550 hybrid contribution -1.314 0.141 0.475 1.404 sum 6.216 -10.599 -2.925 12.630 Atomic orbital electron populations 1.23061 0.78608 1.03604 1.01649 1.86075 1.20985 1.26310 1.88864 1.18431 0.89041 0.85016 1.01299 1.20981 0.99993 0.91250 1.06800 1.21628 0.93793 0.98262 0.95236 1.18335 0.92729 0.91474 1.02799 1.22147 0.97413 0.90021 0.94366 1.15980 0.94091 0.85986 1.01141 1.25296 0.92671 0.92575 0.93296 1.81120 1.10102 1.10163 1.08930 1.20196 0.91143 0.88083 0.88006 1.67696 1.28439 1.28752 1.12475 1.17848 0.87566 0.84338 0.84964 1.41987 1.19478 1.48647 1.28948 1.16862 0.89133 1.20735 1.08044 1.25350 0.92320 0.91190 0.91444 1.81072 1.11068 1.13866 1.13289 1.18218 0.91123 0.87263 0.85097 1.19879 0.95752 1.17412 1.07695 0.88895 1.26224 0.98041 0.96471 0.95824 1.69973 1.26183 1.22835 1.10654 0.86200 0.81271 0.80326 0.78740 1.18811 1.19412 1.18005 1.69597 0.97607 1.24957 1.31155 1.21066 0.99763 0.90218 1.05690 1.17924 0.88017 0.85765 1.04154 1.86144 1.18393 1.28282 1.89630 1.23017 0.79103 1.03466 1.01246 0.92501 0.92628 0.88496 0.84874 0.83695 0.84432 0.76997 0.77279 0.90335 0.84624 0.92694 0.88643 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.42 10.26 -33.81 -0.35 -4.76 16 3 C 0.11 1.62 6.71 -38.87 -0.26 1.36 16 4 C -0.17 -2.64 9.01 -39.53 -0.36 -3.00 16 5 C -0.07 -1.17 7.76 -39.07 -0.30 -1.48 16 6 C -0.05 -0.77 5.30 -105.10 -0.56 -1.33 16 7 C -0.01 -0.20 9.54 -36.86 -0.35 -0.55 16 8 C 0.03 0.58 5.57 -104.72 -0.58 0.00 16 9 C 0.28 5.13 15.35 -22.47 -0.34 4.79 16 10 N -0.43 -8.44 18.54 41.84 0.78 -7.66 16 11 C 0.40 8.05 3.95 -156.98 -0.62 7.43 16 12 N -0.64 -12.42 9.15 -10.26 -0.09 -12.51 16 13 C 0.50 9.66 7.83 -154.98 -1.21 8.44 16 14 N -0.85 -13.04 8.97 31.41 0.28 -12.76 16 15 C -0.33 -7.11 5.87 -105.30 -0.62 -7.73 16 16 C 0.31 6.60 12.96 -22.47 -0.29 6.31 16 17 N -0.51 -11.24 18.54 41.84 0.78 -10.47 16 18 C 0.31 7.21 6.61 -84.38 -0.56 6.65 16 19 C -0.38 -8.82 8.82 -37.74 -0.33 -9.15 16 20 H 0.09 2.17 6.98 -52.49 -0.37 1.81 16 21 C 0.07 1.44 5.50 -17.31 -0.10 1.35 16 22 N -0.68 -15.38 11.52 55.56 0.64 -14.74 16 23 Si 0.91 16.69 29.56 -169.99 -5.03 11.67 16 24 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 26 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 27 N -0.51 -11.63 7.15 -9.00 -0.06 -11.69 16 28 C -0.15 -1.89 8.78 -38.94 -0.34 -2.23 16 29 C 0.09 1.22 6.69 -39.19 -0.26 0.96 16 30 O -0.31 -4.07 10.27 -34.39 -0.35 -4.42 16 31 C 0.03 0.22 9.81 101.05 0.99 1.22 16 32 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 33 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.13 1.93 6.27 -52.49 -0.33 1.60 16 36 H 0.15 2.82 5.16 -52.49 -0.27 2.55 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.40 5.84 7.79 -40.82 -0.32 5.52 16 39 H 0.40 5.29 8.95 -40.82 -0.37 4.92 16 40 H 0.29 5.90 8.29 -40.82 -0.34 5.56 16 41 H 0.14 1.31 6.28 -52.49 -0.33 0.98 16 42 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -28.92 395.83 -6.52 -35.45 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.97 Total: 11.64 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: -5.11 Total: 14.30 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: 2.31 Total: -69.83 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.70 Total: -9.19 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.67 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.92 -6.52 -35.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039379130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.897 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds