Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35802 * 116.99718 * 2 1 4 4 C 1.38912 * 119.88954 * 0.02562 * 3 2 1 5 5 C 1.37690 * 120.18633 * 179.97438 * 4 3 2 6 6 C 1.40131 * 119.96233 * 0.02562 * 5 4 3 7 7 C 1.46613 * 120.11148 * 179.97438 * 6 5 4 8 8 C 1.36424 * 119.99863 * 30.82345 * 7 6 5 9 9 C 1.43209 * 120.00135 * 187.04478 * 8 7 6 10 10 N 8.91774 * 109.40197 * 2.56374 * 2 1 3 11 11 C 1.47775 * 120.00475 * 7.04760 * 8 7 6 12 12 N 1.33077 * 118.83190 * 59.97097 * 11 8 7 13 13 C 1.32573 * 121.25996 * 179.97438 * 12 11 8 14 14 N 1.38028 * 120.51804 * 180.27468 * 13 12 11 15 15 C 1.41312 * 118.95446 * 0.02562 * 13 12 11 16 16 C 1.43202 * 121.02917 * 180.02562 * 15 13 12 17 17 N 7.61625 * 61.07971 * 39.33059 * 2 1 3 18 18 C 1.42163 * 117.93132 * 0.02562 * 15 13 12 19 19 C 1.41074 * 120.67127 * 180.02562 * 18 15 13 20 20 H 1.08002 * 120.00490 * 359.97438 * 19 18 15 21 21 C 1.40288 * 119.99554 * 179.97438 * 19 18 15 22 22 N 1.30579 * 120.00161 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99708 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46945 * 89.99967 * 23 21 19 25 25 H 1.48507 * 109.46632 * 209.99783 * 23 21 19 26 26 H 1.48493 * 109.47316 * 329.99679 * 23 21 19 27 27 N 1.32352 * 118.83816 * 239.96061 * 11 8 7 28 28 C 1.40137 * 119.78010 * 0.25583 * 6 5 4 29 29 C 1.38038 * 119.80799 * 359.48985 * 28 6 5 30 30 O 1.35989 * 119.98170 * 180.23229 * 29 28 6 31 31 C 1.42898 * 116.99982 * 0.25669 * 30 29 28 32 32 H 1.08997 * 109.47178 * 299.99775 * 1 2 3 33 33 H 1.08996 * 109.47161 * 59.99815 * 1 2 3 34 34 H 1.08998 * 109.46724 * 179.97438 * 1 2 3 35 35 H 1.08001 * 119.90728 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.01540 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.00032 * 210.82816 * 7 6 5 38 38 H 0.97007 * 119.99307 * 174.54369 * 14 13 12 39 39 H 0.96997 * 120.00313 * 354.54457 * 14 13 12 40 40 H 0.97003 * 119.99888 * 179.97438 * 22 21 19 41 41 H 1.07995 * 120.09543 * 179.72461 * 28 6 5 42 42 H 1.09006 * 109.47175 * 60.00502 * 31 30 29 43 43 H 1.09006 * 109.47131 * 179.97438 * 31 30 29 44 44 H 1.08994 * 109.47520 * 299.99859 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2867 2.3735 0.0005 5 6 1.9054 3.6036 0.0011 6 6 3.3044 3.6834 0.0005 7 6 3.9666 4.9914 0.0005 8 6 3.3697 6.0581 0.6064 9 6 3.9396 7.3657 0.4782 10 7 4.3915 8.4029 0.3762 11 6 2.1350 5.8645 1.3950 12 7 2.1663 5.0491 2.4462 13 6 1.0871 4.8407 3.1875 14 7 1.1382 3.9961 4.2780 15 6 -0.1149 5.5009 2.8467 16 6 -1.3068 5.3085 3.6169 17 7 -2.2541 5.1565 4.2252 18 6 -0.1041 6.3620 1.7155 19 6 -1.2716 7.0503 1.3239 20 1 -2.1860 6.9255 1.8849 21 6 -1.2448 7.8969 0.2056 22 7 -0.1392 8.0482 -0.4725 23 14 -2.7909 8.8078 -0.3135 24 1 -2.8433 10.1243 0.3715 25 1 -2.7731 9.0152 -1.7839 26 1 -3.9853 8.0081 0.0591 27 7 1.0374 6.5081 1.0308 28 6 4.0685 2.5087 -0.0060 29 6 3.4387 1.2804 -0.0012 30 8 4.1767 0.1382 -0.0027 31 6 5.5982 0.2843 -0.0037 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2084 2.3131 0.0005 36 1 1.3127 4.5065 0.0019 37 1 4.9268 5.1106 -0.4791 38 1 0.3678 3.9100 4.8612 39 1 1.9444 3.4888 4.4613 40 1 -0.1208 8.6333 -1.2459 41 1 5.1470 2.5642 -0.0109 42 1 5.9078 0.8318 0.8866 43 1 6.0648 -0.7008 -0.0044 44 1 5.9064 0.8333 -0.8934 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039379130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = 63.735796 kcal Electronic energy + Delta-G solvation = -33997.694016 eV Core-core repulsion = 29495.326699 eV Total energy + Delta-G solvation = -4502.367318 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.127 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.62193 -41.02111 -39.36141 -38.61839 -37.54538 -37.15846 -36.61407 -35.60580 -34.39488 -32.73029 -31.45827 -31.11647 -30.42033 -28.45824 -28.11795 -27.94112 -25.79755 -24.10073 -23.48736 -23.02440 -21.83417 -20.02499 -19.58326 -19.33228 -18.79026 -18.40809 -18.07455 -17.51502 -16.96259 -16.78421 -16.50334 -16.06746 -15.99185 -15.93537 -15.81780 -15.36876 -15.26254 -14.85471 -14.65648 -14.48115 -14.13329 -14.04891 -13.95674 -13.75949 -13.60929 -13.50711 -13.26579 -13.15607 -13.03650 -12.98981 -12.90511 -12.72290 -12.32384 -12.14784 -12.06938 -11.99314 -11.96609 -11.89709 -11.29610 -11.21410 -10.55973 -10.12212 -9.54603 -9.44856 -8.94304 -8.54999 -8.45761 -6.93391 -0.48772 0.28451 0.45887 0.94958 1.15423 1.37942 1.49644 1.55479 1.68526 2.03811 2.13150 2.31187 2.35910 2.43816 2.49580 2.67581 2.77297 2.89292 3.08157 3.46748 3.71379 3.81688 3.87087 4.00667 4.07979 4.26303 4.31599 4.34399 4.37355 4.44144 4.54690 4.57948 4.62291 4.70954 4.72263 4.88818 4.91549 4.99885 5.08542 5.16112 5.18538 5.37151 5.53050 5.68278 5.69891 5.91275 6.14713 6.27103 6.35104 6.56356 6.65089 6.66675 6.68805 6.92461 7.32282 8.07448 8.18615 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.003641 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.000220 B = 7689.140761 C = 8760.540346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.321 6.321 3 C 0.102 3.898 4 C -0.181 4.181 5 C -0.087 4.087 6 C -0.068 4.068 7 C 0.037 3.963 8 C -0.015 4.015 9 C 0.292 3.708 10 N -0.461 5.461 11 C 0.404 3.596 12 N -0.632 5.632 13 C 0.502 3.498 14 N -0.827 5.827 15 C -0.351 4.351 16 C 0.314 3.686 17 N -0.526 5.526 18 C 0.295 3.705 19 C -0.410 4.410 20 H 0.082 0.918 21 C 0.036 3.964 22 N -0.705 5.705 23 Si 0.974 3.026 24 H -0.264 1.264 25 H -0.256 1.256 26 H -0.261 1.261 27 N -0.539 5.539 28 C -0.127 4.127 29 C 0.083 3.917 30 O -0.328 6.328 31 C 0.014 3.986 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.187 0.813 38 H 0.407 0.593 39 H 0.412 0.588 40 H 0.291 0.709 41 H 0.176 0.824 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.629 -13.937 -3.957 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.235 6.235 3 C 0.056 3.944 4 C -0.200 4.200 5 C -0.106 4.106 6 C -0.068 4.068 7 C 0.012 3.988 8 C -0.020 4.020 9 C -0.022 4.022 10 N -0.138 5.138 11 C 0.133 3.867 12 N -0.365 5.365 13 C 0.252 3.748 14 N -0.371 5.371 15 C -0.369 4.369 16 C 0.004 3.996 17 N -0.207 5.207 18 C 0.169 3.831 19 C -0.441 4.441 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.324 5.324 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.180 1.180 26 H -0.185 1.185 27 N -0.261 5.261 28 C -0.146 4.146 29 C 0.037 3.963 30 O -0.243 6.243 31 C -0.080 4.080 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.204 0.796 38 H 0.237 0.763 39 H 0.243 0.757 40 H 0.102 0.898 41 H 0.193 0.807 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.701 -12.643 -3.904 16.407 hybrid contribution -1.863 0.401 0.654 2.015 sum 7.838 -12.242 -3.250 14.895 Atomic orbital electron populations 1.23285 0.77036 1.05415 1.01676 1.86060 1.22679 1.26087 1.88685 1.18634 0.89910 0.84937 1.00939 1.20931 1.00079 0.91355 1.07606 1.21450 0.94796 0.97375 0.96954 1.18452 0.92052 0.92561 1.03781 1.22651 0.97710 0.88252 0.90156 1.15913 0.94645 0.86652 1.04816 1.25401 0.91929 0.92516 0.92313 1.81121 1.11445 1.10702 1.10536 1.20677 0.91437 0.86841 0.87753 1.67831 1.27895 1.28577 1.12233 1.17985 0.86930 0.84268 0.85585 1.41879 1.20323 1.47355 1.27507 1.16976 0.89993 1.21662 1.08268 1.25384 0.92224 0.90805 0.91141 1.81052 1.11159 1.14557 1.13938 1.18504 0.91657 0.87320 0.85598 1.19996 0.95715 1.19304 1.09079 0.89986 1.26846 1.00522 0.96608 0.95268 1.70019 1.27668 1.23580 1.11175 0.85299 0.77656 0.78732 0.78912 1.18875 1.17995 1.18494 1.69599 0.98067 1.26659 1.31792 1.21359 1.01444 0.88663 1.03119 1.18103 0.87940 0.86726 1.03500 1.86139 1.20829 1.27938 1.89367 1.23392 0.76522 1.05435 1.02622 0.92957 0.92151 0.85810 0.85204 0.86820 0.79643 0.76302 0.75653 0.89784 0.80681 0.91485 0.86667 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.32 -8.83 10.26 -77.29 -0.79 -9.62 16 3 C 0.10 2.93 6.71 22.73 0.15 3.09 16 4 C -0.18 -5.58 9.01 22.30 0.20 -5.38 16 5 C -0.09 -2.87 7.76 22.60 0.18 -2.69 16 6 C -0.07 -1.83 5.30 -20.17 -0.11 -1.93 16 7 C 0.04 0.92 9.54 24.03 0.23 1.15 16 8 C -0.01 -0.50 5.57 -19.93 -0.11 -0.61 16 9 C 0.29 10.73 15.35 88.33 1.36 12.09 16 10 N -0.46 -18.21 18.54 19.01 0.35 -17.85 16 11 C 0.40 16.51 3.95 137.30 0.54 17.06 16 12 N -0.63 -24.33 9.15 -186.37 -1.71 -26.03 16 13 C 0.50 19.41 7.83 133.88 1.05 20.46 16 14 N -0.83 -24.65 8.97 -54.54 -0.49 -25.14 16 15 C -0.35 -15.59 5.87 -20.30 -0.12 -15.71 16 16 C 0.31 13.84 12.96 88.33 1.14 14.98 16 17 N -0.53 -23.47 18.54 19.00 0.35 -23.12 16 18 C 0.30 14.41 6.61 40.50 0.27 14.68 16 19 C -0.41 -20.14 8.82 23.46 0.21 -19.94 16 20 H 0.08 4.05 6.98 -2.91 -0.02 4.03 16 21 C 0.04 1.64 5.50 85.38 0.47 2.11 16 22 N -0.71 -33.12 11.52 21.88 0.25 -32.86 16 23 Si 0.97 35.11 29.56 68.60 2.03 37.14 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 26 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 27 N -0.54 -25.36 7.15 -182.38 -1.30 -26.66 16 28 C -0.13 -2.75 8.78 22.68 0.20 -2.56 16 29 C 0.08 2.11 6.69 22.52 0.15 2.26 16 30 O -0.33 -7.56 10.27 -79.38 -0.82 -8.38 16 31 C 0.01 0.18 9.81 113.37 1.11 1.29 16 32 H 0.05 1.11 7.65 -2.39 -0.02 1.09 16 33 H 0.06 1.17 7.65 -2.39 -0.02 1.15 16 34 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.13 3.92 6.27 -2.91 -0.02 3.90 16 36 H 0.11 4.57 5.16 -2.91 -0.02 4.56 16 37 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.41 11.50 7.79 -92.70 -0.72 10.78 16 39 H 0.41 10.20 8.95 -92.71 -0.83 9.37 16 40 H 0.29 12.37 8.29 -92.71 -0.77 11.60 16 41 H 0.18 2.33 6.28 -2.91 -0.02 2.32 16 42 H 0.07 0.68 7.67 -2.38 -0.02 0.67 16 43 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 Total: -1.00 -65.95 395.83 5.50 -60.45 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.41 Total: 30.23 kcal Atomic # 6 Polarization: 33.83 SS G_CDS: 8.03 Total: 41.86 kcal Atomic # 7 Polarization: -149.13 SS G_CDS: -2.54 Total: -151.67 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.61 Total: -18.00 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -65.95 5.50 -60.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039379130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.185 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds