Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65598 * 119.99875 * 2 1 4 4 O 1.42094 * 106.40159 * 178.53954 * 3 2 1 5 5 O 1.42104 * 106.40015 * 311.45745 * 3 2 1 6 6 C 1.76196 * 107.22183 * 64.99602 * 3 2 1 7 7 C 1.38401 * 119.82696 * 269.72963 * 6 3 2 8 8 C 1.37897 * 120.17080 * 179.76570 * 7 6 3 9 9 C 1.39838 * 119.82352 * 0.52523 * 8 7 6 10 10 C 1.47199 * 120.16876 * 179.70634 * 9 8 7 11 11 C 1.34816 * 120.00244 * 0.02562 * 10 9 8 12 12 C 1.46422 * 120.00157 * 180.02562 * 11 10 9 13 13 O 1.21699 * 119.99975 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00344 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47728 * 89.99681 * 15 14 12 17 17 H 1.08008 * 119.99477 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00430 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00258 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46771 * 90.00332 * 20 18 16 22 22 H 1.48499 * 109.47291 * 210.00344 * 20 18 16 23 23 H 1.48502 * 109.47225 * 330.00275 * 20 18 16 24 24 C 1.46498 * 119.99452 * 359.97438 * 14 12 11 25 25 C 1.52998 * 109.47070 * 90.00361 * 24 14 12 26 26 C 1.47197 * 109.47230 * 179.97438 * 25 24 14 27 27 N 9.43308 * 48.26671 * 28.61739 * 2 1 3 28 28 C 1.39833 * 119.65990 * 359.72640 * 9 8 7 29 29 C 1.37893 * 119.83119 * 359.97438 * 28 9 8 30 30 H 1.09001 * 109.47060 * 60.00757 * 1 2 3 31 31 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47212 * 300.00329 * 1 2 3 33 33 H 0.96997 * 119.99787 * 179.97438 * 2 1 3 34 34 H 1.08001 * 119.91745 * 0.02562 * 7 6 3 35 35 H 1.07998 * 120.08753 * 180.25460 * 8 7 6 36 36 H 1.08006 * 120.00204 * 180.02562 * 10 9 8 37 37 H 1.07998 * 119.99686 * 359.97438 * 11 10 9 38 38 H 1.08997 * 109.46828 * 210.00441 * 15 14 12 39 39 H 1.09003 * 109.46558 * 329.99364 * 15 14 12 40 40 H 0.96992 * 120.00074 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.47035 * 209.99740 * 24 14 12 42 42 H 1.08996 * 109.47787 * 329.99987 * 24 14 12 43 43 H 1.09002 * 109.47170 * 299.99574 * 25 24 14 44 44 H 1.09002 * 109.47437 * 59.99550 * 25 24 14 45 45 H 1.08005 * 120.08740 * 180.02562 * 28 9 8 46 46 H 1.07995 * 119.92133 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6737 1.1003 0.0347 5 8 1.7120 2.2329 -1.0217 6 6 1.9378 2.2416 1.5252 7 6 0.8600 3.1054 1.6121 8 6 0.5726 3.7374 2.8036 9 6 1.3801 3.5120 3.9228 10 6 1.0841 4.1876 5.1966 11 6 0.0320 5.0258 5.2866 12 6 -0.2621 5.6983 6.5536 13 8 0.4436 5.5009 7.5253 14 7 -1.3135 6.5366 6.6435 15 6 -1.6074 7.2099 7.9109 16 6 -0.8755 8.5262 7.9622 17 1 -0.2539 8.8310 7.1332 18 6 -1.0003 9.3418 9.0668 19 7 -1.7576 8.9709 10.0759 20 14 -0.0924 10.9732 9.1306 21 1 -0.9504 12.0398 8.5550 22 1 0.2305 11.3051 10.5415 23 1 1.1642 10.8714 8.3459 24 6 -2.1619 6.7754 5.4732 25 6 -3.3029 5.7564 5.4540 26 6 -4.1557 5.9967 4.2785 27 7 -4.8142 6.1795 3.3716 28 6 2.4703 2.6418 3.8255 29 6 2.7411 2.0126 2.6288 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9500 -0.8400 0.0004 34 1 0.2398 3.2818 0.7457 35 1 -0.2712 4.4080 2.8709 36 1 1.7098 4.0119 6.0593 37 1 -0.5934 5.2019 4.4240 38 1 -2.6801 7.3873 7.9878 39 1 -1.2829 6.5811 8.7400 40 1 -1.8451 9.5445 10.8531 41 1 -2.5753 7.7828 5.5236 42 1 -1.5669 6.6719 4.5658 43 1 -2.8896 4.7490 5.4036 44 1 -3.8979 5.8599 6.3614 45 1 3.0983 2.4624 4.6857 46 1 3.5830 1.3405 2.5519 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048279856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = -33.431491 kcal Electronic energy + Delta-G solvation = -30698.486262 eV Core-core repulsion = 26295.056654 eV Total energy + Delta-G solvation = -4403.429607 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.86478 -39.20388 -37.62639 -36.96051 -36.23605 -35.48121 -35.40879 -34.37414 -32.92337 -31.55681 -30.94043 -30.22245 -27.53442 -26.49041 -24.97038 -24.11412 -23.35091 -22.84675 -20.71765 -19.97253 -18.56953 -18.36645 -18.00787 -17.71192 -17.10582 -16.72239 -16.52739 -15.98007 -15.67289 -15.28595 -15.08870 -14.79107 -14.67922 -14.44807 -14.29376 -14.23762 -13.89479 -13.67746 -13.52944 -13.30765 -13.13976 -12.89715 -12.64931 -12.52561 -12.47450 -12.39699 -12.32547 -12.08401 -12.00767 -11.84488 -11.41386 -11.33294 -11.24064 -11.04587 -10.96329 -10.78394 -10.67003 -10.25502 -10.13351 -9.78300 -9.46621 -9.26474 -8.78410 -8.52815 -7.94113 -6.14549 -4.19498 -0.16652 0.11412 0.93031 1.62233 2.60064 2.67510 2.74698 3.16430 3.25018 3.32432 3.35423 3.40413 3.52515 3.74188 3.92798 4.06563 4.33396 4.35632 4.43908 4.48512 4.52486 4.79442 4.88435 4.91541 4.95298 4.99924 5.06764 5.15271 5.21821 5.24359 5.25078 5.31186 5.36647 5.50847 5.66631 5.70337 5.74819 5.78351 5.99582 6.13729 6.32796 6.40181 6.41481 6.86623 7.25773 7.33459 7.50513 7.81149 8.09562 8.13293 8.71847 8.87907 9.46290 10.93542 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.001910 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.994748 B =14658.076230 C =15952.870774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.698 3.302 4 O -0.959 6.959 5 O -0.956 6.956 6 C -0.682 4.682 7 C -0.020 4.020 8 C -0.133 4.133 9 C 0.003 3.997 10 C -0.066 4.066 11 C -0.169 4.169 12 C 0.533 3.467 13 O -0.531 6.531 14 N -0.588 5.588 15 C 0.244 3.756 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.115 3.885 25 C -0.051 4.051 26 C 0.215 3.785 27 N -0.443 5.443 28 C -0.124 4.124 29 C -0.018 4.018 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.419 0.581 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.037 0.963 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.139 0.861 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -19.610 -17.318 26.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.787 3.213 4 O -0.949 6.949 5 O -0.946 6.946 6 C -0.769 4.769 7 C -0.040 4.040 8 C -0.151 4.151 9 C 0.003 3.997 10 C -0.086 4.086 11 C -0.190 4.190 12 C 0.322 3.678 13 O -0.409 6.409 14 N -0.319 5.319 15 C 0.125 3.875 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.011 4.011 25 C -0.093 4.093 26 C -0.103 4.103 27 N -0.120 5.120 28 C -0.143 4.143 29 C -0.038 4.038 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.157 0.843 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.663 -18.876 -18.602 26.635 hybrid contribution 0.445 0.715 1.237 1.496 sum 3.108 -18.161 -17.366 25.319 Atomic orbital electron populations 1.21525 0.78280 1.04420 1.02222 1.55320 1.16305 1.24376 1.92080 1.01784 0.72851 0.72712 0.73952 1.93598 1.30739 1.83404 1.87209 1.93597 1.78689 1.68375 1.53904 1.30868 1.07850 1.16568 1.21653 1.20860 0.93428 0.91626 0.98046 1.21565 1.00443 1.00783 0.92327 1.19461 0.93562 0.93461 0.93217 1.22384 0.96664 0.94016 0.95513 1.23528 0.98820 0.98122 0.98506 1.18112 0.81599 0.80126 0.87988 1.90818 1.48024 1.63426 1.38625 1.48142 1.26778 1.43596 1.13338 1.19397 0.96623 0.92197 0.79258 1.21394 1.29212 1.02915 1.03357 0.92332 1.24916 0.95309 0.98473 0.95271 1.69912 1.38608 1.37741 1.06894 0.86503 0.80151 0.83424 0.77398 1.20604 1.21066 1.19869 1.21368 0.90875 0.99201 0.89674 1.19919 0.95472 1.02535 0.91363 1.29077 0.93757 0.93148 0.94282 1.81205 1.10193 1.08815 1.11788 1.21520 0.97361 0.97057 0.98375 1.20838 0.96059 0.95800 0.91059 0.91190 0.89790 0.91994 0.74705 0.84027 0.84461 0.83967 0.85336 0.94539 0.93404 0.92604 0.88521 0.90539 0.87481 0.86384 0.84273 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.14 59.85 0.67 0.97 16 2 N -1.12 -5.52 6.19 -16.63 -0.10 -5.63 16 3 S 2.70 22.42 5.73 -107.50 -0.62 21.81 16 4 O -0.96 -10.43 17.26 -57.17 -0.99 -11.41 16 5 O -0.96 -10.68 16.98 -57.17 -0.97 -11.66 16 6 C -0.68 -5.81 5.96 -39.46 -0.24 -6.05 16 7 C -0.02 -0.17 9.50 -39.65 -0.38 -0.55 16 8 C -0.13 -1.17 9.41 -39.11 -0.37 -1.54 16 9 C 0.00 0.03 5.87 -105.06 -0.62 -0.58 16 10 C -0.07 -0.76 9.46 -37.16 -0.35 -1.11 16 11 C -0.17 -2.09 8.61 -37.50 -0.32 -2.41 16 12 C 0.53 9.39 7.61 -12.97 -0.10 9.29 16 13 O -0.53 -11.81 15.81 5.19 0.08 -11.73 16 14 N -0.59 -10.28 2.46 -176.71 -0.43 -10.71 16 15 C 0.24 5.59 5.16 -5.20 -0.03 5.56 16 16 C -0.53 -13.84 9.39 -34.44 -0.32 -14.16 16 17 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 24 C 0.12 1.43 5.07 -4.04 -0.02 1.41 16 25 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 26 C 0.22 2.40 15.43 -20.77 -0.32 2.08 16 27 N -0.44 -6.11 18.53 42.14 0.78 -5.33 16 28 C -0.12 -1.09 9.80 -39.11 -0.38 -1.48 16 29 C -0.02 -0.15 9.50 -39.65 -0.38 -0.53 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.42 1.23 8.96 -34.47 -0.31 0.92 16 34 H 0.14 0.97 7.60 -52.49 -0.40 0.57 16 35 H 0.14 0.98 6.17 -52.49 -0.32 0.65 16 36 H 0.14 1.74 7.52 -52.48 -0.39 1.35 16 37 H 0.13 1.17 4.22 -52.49 -0.22 0.95 16 38 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.08 0.77 6.09 -51.93 -0.32 0.45 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 46 H 0.14 0.94 7.60 -52.49 -0.40 0.54 16 LS Contribution 417.07 15.07 6.29 6.29 Total: -1.00 -37.37 417.07 -9.34 -46.71 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.67 Total: -1.81 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.43 Total: -8.17 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.98 Total: -45.94 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.88 Total: -34.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 22.42 SS G_CDS: -0.62 Total: 21.81 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.37 -9.34 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048279856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.278 kcal (2) G-P(sol) polarization free energy of solvation -37.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds