Wall clock time and date at job start Tue Mar 31 2020 05:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38133 * 119.97440 * 2 1 4 4 C 1.38829 * 119.95458 * 180.22679 * 3 2 1 5 5 N 1.40130 * 120.04530 * 179.75095 * 4 3 2 6 6 C 1.38322 * 114.65524 * 266.88360 * 5 4 3 7 7 N 1.32687 * 121.26542 * 359.97438 * 6 5 4 8 8 C 1.31832 * 121.65472 * 179.97438 * 7 6 5 9 9 C 1.38132 * 121.86655 * 0.04610 * 8 7 6 10 10 C 1.39422 * 118.75231 * 359.97438 * 9 8 7 11 11 C 1.36597 * 117.48611 * 359.97438 * 10 9 8 12 12 S 1.77345 * 122.99083 * 180.02562 * 11 10 9 13 13 O 1.42095 * 105.55514 * 294.64299 * 12 11 10 14 14 O 1.42102 * 105.54889 * 65.45552 * 12 11 10 15 15 N 1.68087 * 112.59749 * 179.97438 * 12 11 10 16 16 C 1.37147 * 122.65733 * 179.97438 * 15 12 11 17 17 H 1.08000 * 119.99531 * 173.53904 * 16 15 12 18 18 C 1.38889 * 120.00021 * 353.52769 * 16 15 12 19 19 N 1.31469 * 120.00059 * 26.42095 * 18 16 15 20 20 Si 1.86801 * 120.00029 * 206.41650 * 18 16 15 21 21 H 1.48504 * 109.46663 * 60.00617 * 20 18 16 22 22 H 1.48494 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47418 * 300.00560 * 20 18 16 24 24 C 1.32311 * 114.65444 * 86.63929 * 5 4 3 25 25 O 1.21582 * 116.73354 * 359.97438 * 24 5 4 26 26 C 1.38871 * 119.90731 * 359.50355 * 4 3 2 27 27 C 1.38091 * 119.95895 * 0.50313 * 26 4 3 28 28 C 1.38451 * 119.97665 * 179.97438 * 2 1 3 29 29 F 1.35101 * 119.95791 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.46788 * 89.99476 * 1 2 3 31 31 H 1.09001 * 109.46915 * 209.99049 * 1 2 3 32 32 H 1.09000 * 109.47127 * 329.99400 * 1 2 3 33 33 H 1.07998 * 120.02459 * 359.96663 * 3 2 1 34 34 H 1.08000 * 119.06632 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.62302 * 179.97438 * 9 8 7 36 36 H 1.08010 * 121.25590 * 179.97438 * 10 9 8 37 37 H 0.97003 * 119.99934 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.02451 * 180.26785 * 26 4 3 39 39 H 1.07996 * 119.98310 * 179.77154 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1966 0.0000 4 6 3.5855 1.1961 -0.0048 5 7 4.2875 2.4089 -0.0100 6 6 4.6314 2.8710 -1.2676 7 7 4.3073 2.1948 -2.3622 8 6 4.6307 2.6284 -3.5645 9 6 5.3245 3.8080 -3.7521 10 6 5.6894 4.5565 -2.6339 11 6 5.3338 4.0719 -1.4073 12 16 5.7221 4.9044 0.1097 13 8 7.1394 4.8766 0.2075 14 8 4.9865 6.1197 0.0763 15 7 5.1606 4.0786 1.4617 16 6 5.3483 4.5380 2.7403 17 1 4.8809 4.0296 3.5707 18 6 6.1395 5.6567 2.9671 19 7 6.2809 6.5636 2.0259 20 14 7.0025 5.8729 4.6096 21 1 7.9227 4.7302 4.8393 22 1 7.7781 7.1391 4.5984 23 1 5.9924 5.9213 5.6970 24 6 4.5071 2.9247 1.1884 25 8 4.0816 2.2984 2.1397 26 6 4.2775 -0.0079 0.0009 27 6 3.5839 -1.2020 0.0008 28 6 2.1988 -1.1993 0.0005 29 9 1.5220 -2.3685 0.0016 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5139 33 1 1.6572 2.1319 -0.0005 34 1 4.3455 2.0445 -4.4271 35 1 5.5795 4.1441 -4.7463 36 1 6.2329 5.4846 -2.7338 37 1 6.8332 7.3452 2.1844 38 1 5.3576 -0.0104 0.0016 39 1 4.1217 -2.1385 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049420983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:31 Heat of formation + Delta-G solvation = -20.884719 kcal Electronic energy + Delta-G solvation = -33211.091836 eV Core-core repulsion = 28548.912898 eV Total energy + Delta-G solvation = -4662.178938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.068 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -48.88386 -41.59685 -39.61965 -38.61433 -35.92057 -35.69766 -34.89183 -34.38559 -32.92502 -32.61383 -32.05912 -30.70340 -29.06115 -27.03593 -26.01246 -24.10603 -23.97677 -22.74476 -21.87773 -20.34310 -19.95187 -18.95719 -17.88634 -17.54666 -17.17662 -16.97837 -16.09017 -15.85131 -15.64785 -15.55388 -15.44235 -14.90955 -14.39037 -14.24379 -14.12460 -14.05773 -13.98164 -13.51743 -13.45551 -13.30147 -13.19851 -12.88711 -12.71853 -12.31440 -12.09171 -11.80182 -11.70101 -11.48317 -11.21385 -10.77704 -10.66972 -10.62468 -10.57698 -10.48417 -10.38541 -10.08290 -10.02942 -9.65693 -9.30480 -8.88309 -8.78208 -8.49973 -8.36080 -7.01316 -4.41399 0.80888 0.91174 1.09896 1.20991 1.27247 2.19195 2.96729 3.08521 3.15126 3.27726 3.48820 3.72534 3.73966 3.97981 4.25051 4.27782 4.56179 4.68120 4.72969 4.75456 4.82061 4.96932 5.13114 5.14748 5.23317 5.36486 5.44742 5.53321 5.55895 5.69867 5.74287 5.84982 5.99812 6.02600 6.03461 6.13003 6.20987 6.38969 6.43195 6.55594 6.92516 7.06765 7.40473 7.58544 7.87410 8.26195 8.47544 8.78806 10.07674 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.004267 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.895422 B = 6560.550125 C = 8385.781594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.066 4.066 4 C 0.158 3.842 5 N -0.508 5.508 6 C 0.428 3.572 7 N -0.513 5.513 8 C 0.168 3.832 9 C -0.223 4.223 10 C 0.062 3.938 11 C -0.754 4.754 12 S 2.607 3.393 13 O -0.932 6.932 14 O -0.925 6.925 15 N -0.745 5.745 16 C -0.242 4.242 17 H 0.132 0.868 18 C 0.006 3.994 19 N -0.835 5.835 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.264 1.264 24 C 0.650 3.350 25 O -0.541 6.541 26 C -0.070 4.070 27 C -0.139 4.139 28 C 0.099 3.901 29 F -0.140 7.140 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.301 0.699 38 H 0.133 0.867 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -8.757 -9.120 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.085 4.085 4 C 0.069 3.931 5 N -0.232 5.232 6 C 0.195 3.805 7 N -0.229 5.229 8 C 0.010 3.990 9 C -0.245 4.245 10 C 0.036 3.964 11 C -0.838 4.838 12 S 2.699 3.301 13 O -0.922 6.922 14 O -0.912 6.912 15 N -0.576 5.576 16 C -0.379 4.379 17 H 0.150 0.850 18 C -0.201 4.201 19 N -0.478 5.478 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.189 1.189 24 C 0.352 3.648 25 O -0.415 6.415 26 C -0.089 4.089 27 C -0.159 4.159 28 C 0.080 3.920 29 F -0.118 7.118 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.113 0.887 38 H 0.151 0.849 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.520 -8.944 -8.497 13.139 hybrid contribution 0.495 0.591 -0.244 0.809 sum -4.026 -8.353 -8.741 12.743 Atomic orbital electron populations 1.20706 0.89873 1.03443 1.02715 1.19646 0.96966 0.91162 1.03495 1.20873 0.92470 0.97810 0.97349 1.17145 0.90428 0.83866 1.01699 1.41906 1.55991 1.23211 1.02078 1.17640 0.89315 0.88058 0.85464 1.67169 1.24034 1.34047 0.97603 1.22622 0.90410 0.92801 0.93167 1.22212 1.04455 0.98073 0.99801 1.20554 0.89418 0.96802 0.89655 1.31956 1.17059 1.10436 1.24306 1.07552 0.76830 0.74413 0.71355 1.93426 1.28355 1.84650 1.85741 1.93393 1.71867 1.41083 1.84820 1.53166 1.58809 1.24019 1.21647 1.19919 1.24925 1.12688 0.80321 0.85039 1.25814 0.97157 0.93972 1.03186 1.69435 1.34491 1.09115 1.34733 0.85311 0.79219 0.78472 0.77884 1.18696 1.19949 1.18893 1.15227 0.83222 0.84881 0.81475 1.90852 1.53260 1.59945 1.37400 1.20954 1.00428 0.90412 0.97156 1.20851 0.92013 0.99015 1.04007 1.17470 0.89901 0.80756 1.03907 1.91459 1.80313 1.46061 1.93989 0.90817 0.91096 0.90833 0.84990 0.81921 0.83749 0.83572 0.88660 0.84916 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.83 36.01 0.35 -0.85 16 2 C -0.11 -1.57 5.88 -104.58 -0.62 -2.18 16 3 C -0.07 -1.08 9.57 -39.40 -0.38 -1.45 16 4 C 0.16 2.88 2.56 -83.61 -0.21 2.67 16 5 N -0.51 -10.55 2.69 -64.88 -0.17 -10.72 16 6 C 0.43 8.39 7.31 -155.18 -1.14 7.26 16 7 N -0.51 -8.52 9.33 -12.38 -0.12 -8.64 16 8 C 0.17 2.17 11.11 -17.59 -0.20 1.97 16 9 C -0.22 -2.81 10.16 -39.18 -0.40 -3.21 16 10 C 0.06 1.03 10.02 -39.73 -0.40 0.63 16 11 C -0.75 -15.43 5.82 -39.58 -0.23 -15.66 16 12 S 2.61 65.93 3.92 -107.50 -0.42 65.51 16 13 O -0.93 -25.19 16.79 -57.32 -0.96 -26.15 16 14 O -0.93 -25.59 15.92 -57.32 -0.91 -26.50 16 15 N -0.75 -19.41 3.10 -15.77 -0.05 -19.46 16 16 C -0.24 -6.41 9.55 -14.93 -0.14 -6.55 16 17 H 0.13 3.34 7.38 -52.49 -0.39 2.96 16 18 C 0.01 0.16 5.09 -17.47 -0.09 0.07 16 19 N -0.84 -22.95 8.73 55.49 0.48 -22.47 16 20 Si 0.97 19.85 29.63 -169.99 -5.04 14.81 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C 0.65 15.58 8.01 -88.52 -0.71 14.87 16 25 O -0.54 -13.54 15.12 5.29 0.08 -13.46 16 26 C -0.07 -1.12 9.97 -39.40 -0.39 -1.51 16 27 C -0.14 -1.90 10.02 -39.54 -0.40 -2.29 16 28 C 0.10 1.37 7.24 -39.40 -0.29 1.09 16 29 F -0.14 -1.84 16.47 2.25 0.04 -1.80 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.72 7.63 -51.93 -0.40 0.32 16 32 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.30 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 39 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -34.12 353.07 -10.27 -44.39 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.30 Total: 4.32 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -5.22 Total: -5.16 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.15 Total: -61.29 kcal Atomic # 8 Polarization: -64.31 SS G_CDS: -1.79 Total: -66.11 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.04 Total: 14.81 kcal Atomic # 16 Polarization: 65.93 SS G_CDS: -0.42 Total: 65.51 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.12 -10.27 -44.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049420983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.508 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds