Wall clock time and date at job start Tue Mar 31 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86805 * 120.00080 * 2 1 4 4 H 1.48499 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46848 * 299.99680 * 3 2 1 6 6 H 1.48497 * 109.46777 * 59.99652 * 3 2 1 7 7 C 1.38637 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.35774 * 117.00090 * 174.59509 * 9 7 2 11 11 C 1.38918 * 119.99802 * 173.81706 * 10 9 7 12 12 C 1.37998 * 120.00198 * 179.76269 * 11 10 9 13 13 C 1.38948 * 119.99705 * 0.54141 * 12 11 10 14 14 N 1.39867 * 120.00528 * 179.69792 * 13 12 11 15 15 C 1.34778 * 120.00338 * 146.31607 * 14 13 12 16 16 O 1.21713 * 119.99961 * 354.77965 * 15 14 13 17 17 C 1.46389 * 120.00425 * 174.78380 * 15 14 13 18 18 C 1.34827 * 120.00004 * 180.02562 * 17 15 14 19 19 C 1.47201 * 120.00103 * 359.97438 * 18 17 15 20 20 C 1.39833 * 120.17246 * 294.72317 * 19 18 17 21 21 C 1.37888 * 119.83019 * 179.76683 * 20 19 18 22 22 C 1.38406 * 120.16636 * 0.49567 * 21 20 19 23 23 C 1.38401 * 120.34402 * 359.78118 * 22 21 20 24 24 C 1.37893 * 120.17397 * 359.96067 * 23 22 21 25 25 C 1.50700 * 119.99956 * 179.97438 * 18 17 15 26 26 F 1.39903 * 109.47202 * 359.97438 * 25 18 17 27 27 F 1.39902 * 109.47487 * 119.99168 * 25 18 17 28 28 F 1.39899 * 109.47237 * 239.99825 * 25 18 17 29 29 C 1.38956 * 119.99258 * 359.71288 * 13 12 11 30 30 C 1.37995 * 119.99327 * 0.02562 * 29 13 12 31 31 H 0.96999 * 119.99782 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.99484 * 0.02562 * 11 10 9 33 33 H 1.07998 * 119.99891 * 180.25079 * 12 11 10 34 34 H 0.97007 * 120.00223 * 326.31853 * 14 13 12 35 35 H 1.08003 * 119.99325 * 359.97438 * 17 15 14 36 36 H 1.08006 * 120.08590 * 0.02810 * 20 19 18 37 37 H 1.07998 * 119.92142 * 180.25642 * 21 20 19 38 38 H 1.08000 * 119.82789 * 179.76849 * 22 21 20 39 39 H 1.08006 * 119.91626 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.08622 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.00456 * 179.97438 * 29 13 12 42 42 H 1.07994 * 119.99702 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0696 -3.5042 -0.1119 11 6 1.4550 -4.7440 0.0110 12 6 2.2008 -5.8988 -0.1092 13 6 3.5685 -5.8214 -0.3419 14 7 4.3256 -6.9917 -0.4575 15 6 5.3825 -7.0309 -1.2929 16 8 5.6217 -6.0820 -2.0166 17 6 6.2428 -8.2148 -1.3300 18 6 7.3004 -8.2537 -2.1654 19 6 7.5897 -7.1060 -3.0405 20 6 6.6929 -6.7505 -4.0528 21 6 6.9686 -5.6711 -4.8655 22 6 8.1344 -4.9466 -4.6877 23 6 9.0297 -5.2957 -3.6917 24 6 8.7656 -6.3693 -2.8676 25 6 8.1863 -9.4722 -2.2031 26 9 7.7139 -10.4208 -1.2898 27 9 8.1741 -10.0180 -3.4912 28 9 9.4938 -9.1089 -1.8630 29 6 4.1840 -4.5812 -0.4596 30 6 3.4369 -3.4266 -0.3447 31 1 -0.4850 0.8401 -0.0004 32 1 0.3928 -4.8040 0.1964 33 1 1.7223 -6.8626 -0.0176 34 1 4.0901 -7.7753 0.0636 35 1 6.0307 -9.0567 -0.6876 36 1 5.7846 -7.3173 -4.1952 37 1 6.2751 -5.3927 -5.6451 38 1 8.3467 -4.1044 -5.3298 39 1 9.9375 -4.7257 -3.5594 40 1 9.4654 -6.6407 -2.0911 41 1 5.2470 -4.5208 -0.6401 42 1 3.9153 -2.4627 -0.4358 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057778078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:33 Heat of formation + Delta-G solvation = -123.963400 kcal Electronic energy + Delta-G solvation = -33389.921785 eV Core-core repulsion = 28272.972977 eV Total energy + Delta-G solvation = -5116.948808 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.103 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.55296 -48.09094 -47.98881 -40.55815 -39.23876 -38.54420 -36.67855 -34.82148 -34.09277 -32.24167 -30.96069 -30.28586 -30.18743 -28.45867 -26.89353 -25.30787 -23.64837 -22.70256 -22.45499 -22.01511 -20.87116 -19.87548 -18.91340 -18.85043 -18.26478 -18.09843 -17.62340 -16.70841 -16.64873 -16.24916 -15.30144 -15.07758 -14.91282 -14.89750 -14.72477 -14.53588 -14.43626 -14.27037 -14.16351 -14.14054 -14.03727 -13.64179 -13.63248 -13.53999 -13.42485 -12.93551 -12.76402 -12.55532 -12.47336 -11.84279 -11.62735 -11.59110 -11.32732 -11.29661 -11.06381 -10.82124 -10.45194 -10.37067 -10.04944 -9.69846 -9.35078 -8.90190 -8.73920 -8.48674 -8.25885 -6.99471 -6.49182 -4.06370 0.21275 1.23982 1.46724 2.07766 2.15833 2.21327 3.00024 3.04252 3.12719 3.14271 3.18346 3.41638 3.66459 3.78976 3.94267 3.95762 4.25432 4.49431 4.60464 4.87349 4.92998 5.05848 5.06610 5.17200 5.18632 5.25929 5.44728 5.54790 5.60420 5.67055 5.86934 5.99651 6.04967 6.10806 6.25180 6.36372 6.41820 6.51340 6.65039 6.78042 6.92370 6.93423 7.02358 7.23348 7.37866 7.54630 7.69836 7.95808 8.17925 8.96696 9.65386 10.68657 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.002233 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.134035 B =12533.494408 C =14000.156577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.148 3.852 11 C -0.178 4.178 12 C -0.090 4.090 13 C 0.031 3.969 14 N -0.647 5.647 15 C 0.525 3.475 16 O -0.493 6.493 17 C -0.113 4.113 18 C -0.096 4.096 19 C -0.060 4.060 20 C -0.036 4.036 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.094 4.094 25 C 0.506 3.494 26 F -0.176 7.176 27 F -0.169 7.169 28 F -0.171 7.171 29 C -0.059 4.059 30 C -0.219 4.219 31 H 0.270 0.730 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.403 0.597 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.112 -18.553 -4.706 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.094 3.906 11 C -0.198 4.198 12 C -0.110 4.110 13 C -0.061 4.061 14 N -0.291 5.291 15 C 0.312 3.688 16 O -0.369 6.369 17 C -0.134 4.134 18 C -0.099 4.099 19 C -0.060 4.060 20 C -0.054 4.054 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.112 4.112 25 C 0.452 3.548 26 F -0.157 7.157 27 F -0.151 7.151 28 F -0.152 7.152 29 C -0.079 4.079 30 C -0.239 4.239 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.238 0.762 35 H 0.168 0.832 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.887 -17.681 -5.189 24.329 hybrid contribution 0.413 0.125 0.401 0.590 sum 16.300 -17.555 -4.788 24.430 Atomic orbital electron populations 1.70052 1.05967 1.27656 1.45886 1.25300 0.95854 0.98880 0.96477 0.85648 0.79234 0.80310 0.78292 1.19012 1.20086 1.20101 1.21383 0.91859 0.80787 1.52557 0.88970 1.83986 1.34290 1.11485 1.78024 1.19430 0.90402 0.88061 0.92751 1.19994 0.99883 0.89538 1.10400 1.20349 0.91212 0.97543 1.01903 1.17165 0.90282 0.85078 1.13555 1.43088 1.29011 1.14592 1.42393 1.18025 0.81884 0.87748 0.81165 1.90979 1.70128 1.36711 1.39048 1.23278 0.93957 0.99069 0.97126 1.21215 0.95873 0.93623 0.99239 1.18095 0.96549 0.94912 0.96432 1.20927 0.96330 0.95885 0.92261 1.20965 0.97330 0.95660 1.00116 1.21241 0.94210 0.98915 0.97632 1.20932 0.99948 0.97487 0.96253 1.21137 0.95486 0.95539 0.99057 1.18361 0.79250 0.83151 0.74052 1.93187 1.88195 1.67018 1.67327 1.93244 1.96381 1.86968 1.38465 1.93226 1.38327 1.91538 1.92086 1.20694 0.99417 0.90454 0.97367 1.21083 0.94108 0.98693 1.09984 0.92006 0.86004 0.86674 0.76220 0.83247 0.86592 0.85941 0.86162 0.86009 0.86086 0.86191 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.78 9.44 30.88 0.29 -10.49 16 8 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 9 O -0.17 -4.90 9.75 0.04 0.00 -4.90 16 10 C 0.15 3.49 6.65 -39.08 -0.26 3.23 16 11 C -0.18 -3.58 9.99 -39.42 -0.39 -3.97 16 12 C -0.09 -1.48 9.96 -39.41 -0.39 -1.88 16 13 C 0.03 0.52 6.27 -83.66 -0.52 0.00 16 14 N -0.65 -7.95 5.33 -11.09 -0.06 -8.01 16 15 C 0.52 6.70 7.35 -12.98 -0.10 6.61 16 16 O -0.49 -7.95 9.91 5.18 0.05 -7.90 16 17 C -0.11 -1.06 9.45 -37.51 -0.35 -1.42 16 18 C -0.10 -0.99 5.00 -102.19 -0.51 -1.50 16 19 C -0.06 -0.72 3.80 -105.06 -0.40 -1.12 16 20 C -0.04 -0.45 6.98 -39.11 -0.27 -0.72 16 21 C -0.12 -1.48 10.03 -39.65 -0.40 -1.88 16 22 C -0.10 -1.15 10.04 -39.46 -0.40 -1.54 16 23 C -0.13 -1.41 10.03 -39.65 -0.40 -1.81 16 24 C -0.09 -1.09 9.37 -39.11 -0.37 -1.45 16 25 C 0.51 4.74 3.35 36.01 0.12 4.86 16 26 F -0.18 -1.49 15.93 2.25 0.04 -1.46 16 27 F -0.17 -1.70 17.27 2.25 0.04 -1.66 16 28 F -0.17 -1.66 16.20 2.25 0.04 -1.62 16 29 C -0.06 -1.14 8.64 -39.40 -0.34 -1.48 16 30 C -0.22 -4.80 9.12 -39.42 -0.36 -5.16 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.40 3.37 8.80 -40.82 -0.36 3.01 16 35 H 0.15 0.90 7.08 -52.48 -0.37 0.53 16 36 H 0.12 1.40 8.05 -52.48 -0.42 0.98 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.12 1.22 7.41 -52.49 -0.39 0.84 16 41 H 0.12 2.28 6.43 -52.49 -0.34 1.94 16 42 H 0.13 2.90 5.71 -52.49 -0.30 2.60 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.18 377.30 -7.33 -39.51 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.71 Total: 7.90 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -5.15 Total: -18.74 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.70 Total: -32.22 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.05 Total: -12.80 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.11 Total: -4.74 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.18 -7.33 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057778078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.453 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds