Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39731 * 125.77359 * 2 1 4 4 C 1.36163 * 107.85959 * 180.16666 * 3 2 1 5 5 N 1.39342 * 126.27006 * 179.84439 * 4 3 2 6 6 C 1.34774 * 119.99459 * 359.69188 * 5 4 3 7 7 O 1.21734 * 120.00417 * 359.97438 * 6 5 4 8 8 C 1.46197 * 119.99697 * 179.97438 * 6 5 4 9 9 C 1.35025 * 119.99979 * 179.97438 * 8 6 5 10 10 C 1.46940 * 119.99863 * 180.02562 * 9 8 6 11 11 C 1.39921 * 120.21455 * 359.97438 * 10 9 8 12 12 C 1.37752 * 119.88354 * 179.97438 * 11 10 9 13 13 C 1.38575 * 120.31785 * 0.02562 * 12 11 10 14 14 C 1.38126 * 120.43317 * 359.97438 * 13 12 11 15 15 C 1.38604 * 120.11481 * 359.97438 * 14 13 12 16 16 O 1.35686 * 120.16195 * 179.97438 * 15 14 13 17 17 C 1.42899 * 117.00165 * 0.02880 * 16 15 14 18 18 F 1.39899 * 109.46934 * 299.99734 * 17 16 15 19 19 F 1.39904 * 109.47299 * 59.99442 * 17 16 15 20 20 N 1.35821 * 107.46671 * 359.57919 * 4 3 2 21 21 C 1.46498 * 126.09234 * 180.22577 * 20 4 3 22 22 C 1.50701 * 109.46911 * 90.00449 * 21 20 4 23 23 H 1.08004 * 120.00230 * 0.02562 * 22 21 20 24 24 C 1.37878 * 119.99982 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99635 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00022 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47298 * 89.99802 * 26 24 22 28 28 H 1.48506 * 109.46942 * 209.99555 * 26 24 22 29 29 H 1.48504 * 109.47030 * 329.99426 * 26 24 22 30 30 N 1.30833 * 125.78069 * 179.69727 * 2 1 3 31 31 H 1.08995 * 109.47386 * 270.27416 * 1 2 3 32 32 H 1.09001 * 109.47359 * 30.28016 * 1 2 3 33 33 H 1.09000 * 109.47131 * 150.27930 * 1 2 3 34 34 H 1.08004 * 126.07272 * 0.02562 * 3 2 1 35 35 H 0.96998 * 119.99906 * 179.68264 * 5 4 3 36 36 H 1.07998 * 119.99780 * 359.97438 * 8 6 5 37 37 H 1.07998 * 120.00241 * 0.02562 * 9 8 6 38 38 H 1.08006 * 120.06157 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.84613 * 179.97438 * 12 11 10 40 40 H 1.08004 * 119.77854 * 179.72255 * 13 12 11 41 41 H 1.08008 * 119.94254 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47666 * 179.97438 * 17 16 15 43 43 H 1.08998 * 109.46873 * 210.00147 * 21 20 4 44 44 H 1.08989 * 109.47368 * 330.00554 * 21 20 4 45 45 H 0.97009 * 119.99193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6194 0.7149 -0.0038 5 7 4.7494 1.5303 -0.0081 6 6 4.6126 2.8710 -0.0151 7 8 3.5021 3.3697 -0.0182 8 6 5.7981 3.7266 -0.0191 9 6 5.6612 5.0699 -0.0267 10 6 6.8527 5.9298 -0.0312 11 6 8.1313 5.3614 -0.0272 12 6 9.2436 6.1740 -0.0321 13 6 9.1028 7.5525 -0.0404 14 6 7.8469 8.1276 -0.0444 15 6 6.7155 7.3270 -0.0407 16 8 5.4814 7.8908 -0.0441 17 6 5.4204 9.3185 -0.0522 18 9 6.0591 9.8190 1.0874 19 9 6.0597 9.8061 -1.1971 20 7 3.6089 -0.6433 0.0035 21 6 4.7859 -1.5155 0.0073 22 6 5.1904 -1.8070 1.4294 23 1 4.6267 -1.3852 2.2485 24 6 6.2794 -2.6132 1.6850 25 7 6.6326 -2.8672 2.9261 26 14 7.2538 -3.3434 0.2684 27 1 8.3459 -2.4123 -0.1130 28 1 7.8358 -4.6441 0.6865 29 1 6.3544 -3.5543 -0.8943 30 7 2.2719 -1.0614 0.0056 31 1 -0.3634 0.0049 1.0276 32 1 -0.3634 0.8875 -0.5182 33 1 -0.3633 -0.8925 -0.5095 34 1 1.9873 2.1600 0.0004 35 1 5.6342 1.1329 -0.0059 36 1 6.7833 3.2842 -0.0160 37 1 4.6760 5.5123 -0.0294 38 1 8.2459 4.2875 -0.0212 39 1 10.2302 5.7346 -0.0286 40 1 9.9809 8.1814 -0.0396 41 1 7.7464 9.2029 -0.0505 42 1 4.3781 9.6377 -0.0547 43 1 4.5476 -2.4495 -0.5014 44 1 5.6073 -1.0195 -0.5096 45 1 7.3990 -3.4341 3.1058 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = -52.316567 kcal Electronic energy + Delta-G solvation = -32910.370754 eV Core-core repulsion = 27952.281842 eV Total energy + Delta-G solvation = -4958.088912 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.84656 -47.82854 -40.88149 -40.50967 -39.18084 -37.92824 -34.82678 -34.37287 -33.73153 -32.14637 -30.80420 -30.30791 -29.43684 -28.21358 -26.59437 -26.29580 -24.86863 -23.04508 -22.55477 -21.99313 -20.32616 -19.73712 -19.44650 -18.97281 -18.52699 -18.40612 -17.27226 -17.17566 -16.79683 -16.31859 -16.01976 -15.44050 -15.21513 -15.10336 -14.81224 -14.47798 -14.45426 -14.38692 -14.15646 -14.13933 -13.82739 -13.81900 -13.41056 -13.16219 -13.10169 -12.71131 -12.61630 -12.56074 -12.39357 -12.31782 -11.88046 -11.83131 -11.63481 -11.41664 -11.15117 -10.84120 -10.70177 -10.45333 -10.22364 -9.98979 -9.75842 -9.55417 -9.14620 -8.86363 -8.46776 -7.92443 -7.45730 -6.33339 -4.37627 0.19520 0.89630 1.66112 2.03213 2.57932 2.80353 2.96757 3.06312 3.17099 3.17986 3.23453 3.42737 3.70142 3.70475 3.80487 4.13899 4.14130 4.21155 4.33610 4.53012 4.69441 4.81086 4.92824 4.95355 5.00574 5.10599 5.31024 5.50355 5.54107 5.60162 5.80253 5.96117 6.01888 6.03187 6.04942 6.10206 6.15779 6.25897 6.30336 6.34549 6.39058 6.58710 6.67195 6.76516 7.20532 7.46454 7.57373 7.78547 8.18964 8.32760 8.58155 8.73470 9.21333 10.78931 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.002134 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.314938 B =13116.665954 C =15492.283737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.053 3.947 3 C -0.290 4.290 4 C 0.304 3.696 5 N -0.634 5.634 6 C 0.554 3.446 7 O -0.519 6.519 8 C -0.202 4.202 9 C -0.012 4.012 10 C -0.085 4.085 11 C -0.068 4.068 12 C -0.143 4.143 13 C -0.072 4.072 14 C -0.195 4.195 15 C 0.127 3.873 16 O -0.313 6.313 17 C 0.411 3.589 18 F -0.198 7.198 19 F -0.198 7.198 20 N -0.346 5.346 21 C 0.231 3.769 22 C -0.545 4.545 23 H 0.081 0.919 24 C 0.080 3.920 25 N -0.883 5.883 26 Si 0.872 3.128 27 H -0.271 1.271 28 H -0.278 1.278 29 H -0.263 1.263 30 N -0.282 5.282 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.164 0.836 35 H 0.416 0.584 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.185 0.815 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 25.259 -8.280 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.321 4.321 4 C 0.082 3.918 5 N -0.280 5.280 6 C 0.344 3.656 7 O -0.395 6.395 8 C -0.223 4.223 9 C -0.032 4.032 10 C -0.086 4.086 11 C -0.086 4.086 12 C -0.161 4.161 13 C -0.090 4.090 14 C -0.213 4.213 15 C 0.084 3.916 16 O -0.230 6.230 17 C 0.321 3.679 18 F -0.179 7.179 19 F -0.180 7.180 20 N -0.132 5.132 21 C 0.111 3.889 22 C -0.583 4.583 23 H 0.099 0.901 24 C -0.125 4.125 25 N -0.520 5.520 26 Si 0.697 3.303 27 H -0.197 1.197 28 H -0.204 1.204 29 H -0.187 1.187 30 N -0.106 5.106 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.181 0.819 35 H 0.252 0.748 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.202 0.798 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.446 24.099 -8.154 25.558 hybrid contribution 1.642 0.335 -0.417 1.727 sum 4.088 24.434 -8.571 26.214 Atomic orbital electron populations 1.20032 0.87441 1.02353 1.02305 1.22045 0.96588 0.90975 1.01564 1.21298 0.88997 1.00523 1.21312 1.18018 0.88150 0.83005 1.02598 1.42619 1.08167 1.05612 1.71612 1.18100 0.89819 0.80963 0.76727 1.90749 1.26493 1.73899 1.48389 1.22739 0.97928 0.94083 1.07570 1.22137 0.97664 0.92523 0.90843 1.18338 0.94031 0.89172 1.07056 1.21408 0.90505 1.00759 0.95957 1.21134 0.99159 0.93459 1.02398 1.21114 0.96644 0.95160 0.96087 1.21488 0.92449 1.00308 1.07076 1.18987 0.83038 0.92045 0.97558 1.86615 1.28062 1.20288 1.88005 1.23454 0.95149 0.77488 0.71763 1.93107 1.85197 1.87402 1.52238 1.93104 1.85198 1.87839 1.51868 1.49041 1.06104 1.01915 1.56137 1.19922 0.79309 0.90005 0.99638 1.21206 1.14252 1.32513 0.90344 0.90057 1.24826 0.96634 0.95239 0.95781 1.69880 1.26812 1.36734 1.18552 0.86922 0.80760 0.79750 0.82838 1.19655 1.20369 1.18746 1.77333 0.85837 1.21790 1.25678 0.91165 0.91075 0.91527 0.81886 0.74777 0.84837 0.83975 0.84067 0.84978 0.85138 0.84646 0.79847 0.92760 0.94755 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.08 7.20 -82.46 -0.59 0.48 16 3 C -0.29 -5.96 9.58 -39.77 -0.38 -6.34 16 4 C 0.30 6.41 7.68 -152.76 -1.17 5.24 16 5 N -0.63 -11.08 5.41 -12.67 -0.07 -11.15 16 6 C 0.55 8.89 7.70 -13.07 -0.10 8.79 16 7 O -0.52 -9.55 13.35 5.16 0.07 -9.48 16 8 C -0.20 -2.43 9.41 -37.53 -0.35 -2.78 16 9 C -0.01 -0.14 9.21 -37.20 -0.34 -0.48 16 10 C -0.09 -0.88 5.88 -104.93 -0.62 -1.50 16 11 C -0.07 -0.60 9.41 -39.13 -0.37 -0.97 16 12 C -0.14 -1.09 10.02 -39.63 -0.40 -1.49 16 13 C -0.07 -0.55 10.03 -39.50 -0.40 -0.94 16 14 C -0.19 -1.72 8.25 -39.49 -0.33 -2.05 16 15 C 0.13 1.28 6.50 -38.64 -0.25 1.03 16 16 O -0.31 -2.82 9.61 -18.76 -0.18 -3.00 16 17 C 0.41 2.43 5.98 101.05 0.60 3.03 16 18 F -0.20 -1.46 15.58 2.25 0.04 -1.42 16 19 F -0.20 -1.42 15.58 2.25 0.04 -1.39 16 20 N -0.35 -8.03 3.62 -61.46 -0.22 -8.25 16 21 C 0.23 5.42 5.09 -5.19 -0.03 5.39 16 22 C -0.54 -14.93 9.94 -34.44 -0.34 -15.27 16 23 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 24 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 25 N -0.88 -25.70 13.96 55.43 0.77 -24.92 16 26 Si 0.87 19.46 27.47 -169.99 -4.67 14.79 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 30 N -0.28 -6.52 12.56 33.64 0.42 -6.10 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.16 3.26 5.82 -52.48 -0.31 2.95 16 35 H 0.42 6.47 7.97 -40.82 -0.33 6.14 16 36 H 0.13 1.24 6.08 -52.49 -0.32 0.92 16 37 H 0.14 1.73 7.10 -52.49 -0.37 1.36 16 38 H 0.14 1.01 6.17 -52.48 -0.32 0.69 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 41 H 0.14 1.09 5.10 -52.48 -0.27 0.82 16 42 H 0.19 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 44 H 0.03 0.72 6.95 -51.94 -0.36 0.36 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -35.29 393.11 -7.44 -42.73 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.77 Total: 8.61 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -4.79 Total: -6.34 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.91 Total: -50.42 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.11 Total: -12.48 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.07 Total: -2.81 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.67 Total: 14.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.29 -7.44 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.585 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds