Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86806 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47349 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47229 * 300.00496 * 3 2 1 6 6 H 1.48498 * 109.46845 * 60.00089 * 3 2 1 7 7 C 1.38799 * 120.00689 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00693 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99349 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99954 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47255 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00206 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.08991 * 109.47204 * 325.00045 * 14 13 11 16 16 C 1.53003 * 109.46673 * 204.99775 * 14 13 11 17 17 C 1.50700 * 109.46947 * 65.00640 * 16 14 13 18 18 C 1.38262 * 119.98980 * 89.99854 * 17 16 14 19 19 C 1.38227 * 120.05195 * 180.02562 * 18 17 16 20 20 C 1.38219 * 120.02402 * 0.25898 * 19 18 17 21 21 C 1.38438 * 119.97316 * 359.46494 * 20 19 18 22 22 F 1.35104 * 120.02417 * 180.25968 * 21 20 19 23 23 C 1.38177 * 119.98533 * 270.01626 * 17 16 14 24 24 C 1.50696 * 109.47010 * 85.00410 * 14 13 11 25 25 C 1.38266 * 119.98484 * 219.99818 * 24 14 13 26 26 C 1.38229 * 120.04938 * 179.97438 * 25 24 14 27 27 C 1.38214 * 120.02676 * 359.97438 * 26 25 24 28 28 C 1.38439 * 119.97691 * 0.02562 * 27 26 25 29 29 F 1.35099 * 120.02952 * 180.02562 * 28 27 26 30 30 C 1.38183 * 119.99050 * 39.71924 * 24 14 13 31 31 H 0.96992 * 120.00024 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46787 * 60.00194 * 10 9 7 33 33 H 1.08998 * 109.47088 * 300.00242 * 10 9 7 34 34 H 0.97000 * 119.99676 * 0.02562 * 13 11 10 35 35 H 1.08997 * 109.47540 * 304.99903 * 16 14 13 36 36 H 1.09003 * 109.46699 * 185.00298 * 16 14 13 37 37 H 1.07999 * 119.97792 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.98464 * 179.97438 * 19 18 17 39 39 H 1.08004 * 120.01020 * 179.72204 * 20 19 18 40 40 H 1.08000 * 120.01241 * 359.97438 * 23 17 16 41 41 H 1.07997 * 119.97635 * 0.02562 * 25 24 14 42 42 H 1.08000 * 119.98473 * 180.02562 * 26 25 24 43 43 H 1.08008 * 120.01298 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.00810 * 0.02562 * 30 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8914 -0.0005 11 6 1.9877 -5.3026 0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0007 14 6 2.3307 -7.7150 0.0019 15 1 1.4151 -7.7596 0.5915 16 6 3.3764 -8.6505 0.6120 17 6 3.5787 -8.2994 2.0635 18 6 2.8053 -8.9065 3.0357 19 6 2.9894 -8.5849 4.3674 20 6 3.9433 -7.6520 4.7281 21 6 4.7221 -7.0477 3.7561 22 9 5.6584 -6.1395 4.1081 23 6 4.5366 -7.3705 2.4223 24 6 2.0384 -8.1431 -1.4131 25 6 0.9079 -8.8896 -1.6896 26 6 0.6382 -9.2826 -2.9871 27 6 1.4982 -8.9292 -4.0097 28 6 2.6304 -8.1818 -3.7341 29 9 3.4716 -7.8353 -4.7329 30 6 2.8972 -7.7847 -2.4346 31 1 -0.4850 0.8400 0.0004 32 1 3.1246 -3.7312 0.8895 33 1 3.1247 -3.7312 -0.8905 34 1 3.8012 -6.1833 0.0012 35 1 4.3194 -8.5400 0.0766 36 1 3.0320 -9.6817 0.5322 37 1 2.0563 -9.6319 2.7543 38 1 2.3844 -9.0595 5.1258 39 1 4.0838 -7.3976 5.7683 40 1 5.1407 -6.8965 1.6628 41 1 0.2346 -9.1652 -0.8914 42 1 -0.2454 -9.8653 -3.2020 43 1 1.2870 -9.2360 -5.0236 44 1 3.7779 -7.1981 -2.2189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058249420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = -84.159873 kcal Electronic energy + Delta-G solvation = -30915.812223 eV Core-core repulsion = 26366.802601 eV Total energy + Delta-G solvation = -4549.009622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.100 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.03208 -48.98740 -40.40010 -39.14137 -38.58833 -35.71448 -32.63160 -32.41994 -31.65297 -30.81154 -30.65097 -29.28826 -27.93572 -25.49358 -24.55095 -23.10913 -22.81968 -21.96197 -21.20160 -20.31098 -18.01836 -17.64786 -17.41306 -16.87398 -16.46650 -16.43178 -16.32373 -16.19619 -15.76689 -15.69109 -15.52072 -15.10437 -14.79812 -14.48671 -14.19378 -14.02815 -13.91393 -13.66894 -13.52459 -13.30158 -13.08532 -12.81871 -12.59231 -12.48520 -12.24161 -12.05517 -11.98453 -11.87395 -11.58733 -11.38811 -11.09949 -11.06053 -11.01141 -10.75227 -9.80489 -9.49210 -9.31323 -9.17313 -9.06904 -8.99410 -8.88283 -8.77495 -8.23254 -6.49207 -6.21335 -3.91520 0.85329 0.95446 1.02113 1.05946 2.97489 3.05349 3.22235 3.27457 3.28145 3.32244 3.44883 3.69486 3.95663 4.09095 4.20887 4.28265 4.44359 4.57086 4.60791 4.74895 4.78370 4.86845 4.89389 4.95304 5.03569 5.08687 5.14204 5.18381 5.19992 5.33417 5.53035 5.59321 5.63931 5.69481 5.80597 5.87193 5.87563 5.88634 5.95554 6.03774 6.11748 6.13412 6.18076 6.25958 6.56569 6.64527 6.72617 7.60118 7.62018 8.36140 8.56760 9.24454 10.86179 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.005639 B = 0.003357 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4964.193058 B = 8337.595934 C =11915.718840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.537 3.463 12 O -0.510 6.510 13 N -0.732 5.732 14 C 0.193 3.807 15 H 0.105 0.895 16 C -0.084 4.084 17 C -0.052 4.052 18 C -0.125 4.125 19 C -0.087 4.087 20 C -0.157 4.157 21 C 0.103 3.897 22 F -0.139 7.139 23 C -0.146 4.146 24 C -0.064 4.064 25 C -0.113 4.113 26 C -0.090 4.090 27 C -0.155 4.155 28 C 0.097 3.903 29 F -0.141 7.141 30 C -0.137 4.137 31 H 0.268 0.732 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -24.951 1.889 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.323 3.677 12 O -0.384 6.384 13 N -0.387 5.387 14 C 0.088 3.912 15 H 0.123 0.877 16 C -0.122 4.122 17 C -0.052 4.052 18 C -0.143 4.143 19 C -0.105 4.105 20 C -0.176 4.176 21 C 0.084 3.916 22 F -0.117 7.117 23 C -0.165 4.165 24 C -0.065 4.065 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.174 4.174 28 C 0.078 3.922 29 F -0.120 7.120 30 C -0.156 4.156 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.059 -25.107 1.875 25.895 hybrid contribution 2.742 1.789 -0.177 3.279 sum 8.801 -23.318 1.698 24.981 Atomic orbital electron populations 1.70023 1.05944 1.27329 1.47018 1.24979 0.95007 0.98997 0.94521 0.86133 0.79638 0.81930 0.77908 1.19600 1.20556 1.20546 1.22907 0.94943 0.91654 1.58786 0.90904 1.85375 1.04796 0.96300 1.96700 1.23531 1.06677 0.95364 1.04863 1.20296 0.86539 0.86186 0.74694 1.90700 1.15238 1.85443 1.46989 1.46079 1.09858 1.04695 1.78029 1.19729 0.98336 0.81615 0.91564 0.87740 1.20933 0.99918 1.00110 0.91227 1.19554 0.94841 0.95432 0.95347 1.21109 0.99751 1.00917 0.92560 1.21001 0.96733 0.96330 0.96473 1.21179 0.97693 0.99095 0.99627 1.17698 0.89773 0.90648 0.93481 1.91523 1.62859 1.64627 1.92730 1.20995 1.00849 1.00046 0.94590 1.20060 0.94392 0.96666 0.95406 1.21077 0.96546 0.98326 0.97181 1.20979 0.98725 0.99004 0.92106 1.21150 0.94561 1.00809 1.00908 1.17678 0.90175 0.99370 0.85018 1.91502 1.70014 1.90523 1.59939 1.20891 1.01698 1.01995 0.90991 0.92252 0.89267 0.89294 0.76908 0.89753 0.88591 0.85219 0.84962 0.84826 0.84937 0.85136 0.84934 0.84913 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.54 9.64 7.80 -10.99 -0.09 9.55 16 12 O -0.51 -11.13 15.52 5.56 0.09 -11.04 16 13 N -0.73 -9.02 3.76 -54.93 -0.21 -9.22 16 14 C 0.19 1.98 2.16 -69.08 -0.15 1.83 16 15 H 0.10 1.24 7.44 -51.93 -0.39 0.85 16 16 C -0.08 -0.59 4.87 -27.88 -0.14 -0.73 16 17 C -0.05 -0.44 4.95 -104.64 -0.52 -0.96 16 18 C -0.13 -1.00 9.70 -39.58 -0.38 -1.39 16 19 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 20 C -0.16 -1.49 10.03 -39.51 -0.40 -1.89 16 21 C 0.10 1.13 7.30 -39.42 -0.29 0.84 16 22 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 23 C -0.15 -1.41 9.07 -39.52 -0.36 -1.77 16 24 C -0.06 -0.68 4.91 -104.63 -0.51 -1.20 16 25 C -0.11 -1.11 9.67 -39.57 -0.38 -1.50 16 26 C -0.09 -0.83 10.04 -39.59 -0.40 -1.22 16 27 C -0.16 -1.57 10.03 -39.52 -0.40 -1.97 16 28 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 29 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 30 C -0.14 -1.54 9.30 -39.51 -0.37 -1.91 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 33 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.40 3.87 7.82 -40.82 -0.32 3.55 16 35 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.10 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.13 1.09 7.57 -52.49 -0.40 0.69 16 41 H 0.13 1.07 8.04 -52.49 -0.42 0.65 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.13 1.35 7.71 -52.49 -0.40 0.95 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -35.84 404.25 -10.36 -46.20 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.27 Total: 2.60 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -4.64 Total: -18.44 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.53 Total: -34.79 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.84 -10.36 -46.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058249420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.957 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds