Wall clock time and date at job start Tue Mar 31 2020 05:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39760 * 125.83847 * 2 1 4 4 C 1.36109 * 107.82449 * 180.15932 * 3 2 1 5 5 N 1.39479 * 126.21735 * 179.84446 * 4 3 2 6 6 C 1.34777 * 119.99460 * 359.69240 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72541 * 6 5 4 9 9 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 10 10 C 1.38240 * 119.98526 * 269.72329 * 9 8 6 11 11 C 1.38217 * 120.00647 * 179.76719 * 10 9 8 12 12 C 1.38330 * 119.99284 * 0.50688 * 11 10 9 13 13 Br 1.89097 * 120.01071 * 179.72213 * 12 11 10 14 14 C 1.38319 * 119.97411 * 359.74878 * 12 11 10 15 15 C 1.38217 * 119.99598 * 359.97438 * 14 12 11 16 16 N 1.35264 * 107.57265 * 359.58737 * 4 3 2 17 17 C 1.46490 * 126.04937 * 180.23556 * 16 4 3 18 18 C 1.50708 * 109.46990 * 90.00107 * 17 16 4 19 19 H 1.08000 * 119.99671 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00030 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00023 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00080 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46665 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46731 * 119.99790 * 22 20 18 25 25 H 1.48489 * 109.47280 * 239.99889 * 22 20 18 26 26 N 1.30848 * 125.83569 * 179.69263 * 2 1 3 27 27 H 1.09004 * 109.47206 * 270.28172 * 1 2 3 28 28 H 1.09002 * 109.46598 * 30.27555 * 1 2 3 29 29 H 1.08996 * 109.47328 * 150.27965 * 1 2 3 30 30 H 1.07998 * 126.08710 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00055 * 179.69940 * 5 4 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 33 33 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 34 34 H 1.07997 * 119.99910 * 0.02562 * 10 9 8 35 35 H 1.08007 * 120.00881 * 180.23432 * 11 10 9 36 36 H 1.08008 * 120.00434 * 179.97438 * 14 12 11 37 37 H 1.08004 * 120.00028 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47347 * 209.99472 * 17 16 4 39 39 H 1.09003 * 109.47685 * 330.00117 * 17 16 4 40 40 H 0.97003 * 119.99988 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0036 5 7 4.7513 1.5274 -0.0079 6 6 4.6157 2.8683 -0.0150 7 8 3.5096 3.3661 -0.0172 8 6 5.8384 3.7492 -0.0134 9 6 5.4154 5.1957 -0.0154 10 6 5.2294 5.8594 -1.2137 11 6 4.8368 7.1846 -1.2162 12 6 4.6402 7.8498 -0.0193 13 35 4.1107 9.6651 -0.0221 14 6 4.8316 7.1867 1.1794 15 6 5.2187 5.8598 1.1809 16 7 3.6092 -0.6405 0.0035 17 6 4.7870 -1.5116 0.0076 18 6 5.1913 -1.8029 1.4299 19 1 4.6276 -1.3809 2.2488 20 6 6.2809 -2.6081 1.6857 21 7 6.9671 -3.1224 0.6886 22 14 6.7826 -2.9686 3.4487 23 1 5.8545 -2.2764 4.3787 24 1 6.7241 -4.4326 3.6904 25 1 8.1672 -2.4838 3.6783 26 7 2.2730 -1.0608 0.0057 27 1 -0.3634 0.0051 1.0277 28 1 -0.3632 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.9902 2.1597 0.0004 31 1 5.6359 1.1293 -0.0058 32 1 6.4319 3.5456 0.8780 33 1 6.4354 3.5440 -0.9020 34 1 5.3868 5.3412 -2.1481 35 1 4.6878 7.7021 -2.1524 36 1 4.6786 7.7057 2.1141 37 1 5.3685 5.3421 2.1168 38 1 4.5496 -2.4460 -0.5011 39 1 5.6082 -1.0149 -0.5091 40 1 7.7334 -3.6892 0.8686 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:59 Heat of formation + Delta-G solvation = 63.299890 kcal Electronic energy + Delta-G solvation = -24881.489909 eV Core-core repulsion = 21129.950402 eV Total energy + Delta-G solvation = -3751.539507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.93875 -39.91005 -38.74935 -34.76374 -33.79776 -33.64575 -32.09861 -31.30854 -30.94321 -29.21734 -28.49735 -26.92610 -26.05186 -23.09910 -23.02554 -22.30029 -20.96446 -19.74791 -19.28559 -17.13957 -16.83683 -16.72693 -16.36817 -16.06147 -15.39019 -15.03302 -14.92405 -14.40684 -14.10124 -13.96345 -13.75204 -13.44644 -13.19694 -12.86389 -12.80683 -12.53119 -12.44462 -12.02061 -11.81156 -11.60282 -11.50687 -11.42968 -11.09286 -11.03238 -10.94343 -10.54406 -10.41107 -10.37281 -9.96480 -9.82466 -9.53472 -9.24758 -8.82135 -8.76421 -7.94225 -7.46437 -6.37339 -4.45817 0.79892 1.08966 1.37407 2.21898 2.76848 3.07753 3.11834 3.21239 3.26838 3.39615 3.58163 3.80786 4.21110 4.34874 4.46896 4.65349 4.76781 4.91171 4.96151 5.06661 5.23328 5.29377 5.34725 5.46340 5.62639 5.70055 5.92964 5.94941 6.02494 6.14302 6.16572 6.24658 6.25561 6.40077 6.55071 6.64713 6.80326 7.01290 7.48941 7.55238 7.59839 7.75974 7.88272 8.26670 8.59237 8.68277 9.22061 10.69777 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.002020 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.614795 B =13855.455899 C =15213.744672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.301 3.699 5 N -0.640 5.640 6 C 0.520 3.480 7 O -0.506 6.506 8 C -0.102 4.102 9 C -0.046 4.046 10 C -0.098 4.098 11 C -0.090 4.090 12 C -0.090 4.090 13 Br -0.058 7.058 14 C -0.090 4.090 15 C -0.097 4.097 16 N -0.345 5.345 17 C 0.256 3.744 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.280 1.280 26 N -0.285 5.285 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.417 0.583 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 23.706 -3.147 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.079 3.921 5 N -0.287 5.287 6 C 0.306 3.694 7 O -0.380 6.380 8 C -0.142 4.142 9 C -0.047 4.047 10 C -0.117 4.117 11 C -0.110 4.110 12 C -0.170 4.170 13 Br 0.027 6.973 14 C -0.109 4.109 15 C -0.116 4.116 16 N -0.130 5.130 17 C 0.138 3.862 18 C -0.578 4.578 19 H 0.083 0.917 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 N -0.111 5.111 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.253 0.747 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.536 23.303 -3.197 23.572 hybrid contribution 1.143 -0.226 0.966 1.514 sum -0.393 23.077 -2.231 23.188 Atomic orbital electron populations 1.20019 0.87615 1.02318 1.02151 1.22033 0.96513 0.91068 1.01837 1.21265 0.89092 1.00416 1.21925 1.17931 0.88030 0.83336 1.02829 1.42800 1.08305 1.05572 1.72070 1.20400 0.91269 0.81215 0.76554 1.90675 1.26665 1.73627 1.47009 1.20690 0.96318 0.90738 1.06472 1.19392 0.97887 0.93863 0.93543 1.21023 0.98813 0.93881 0.97942 1.21048 0.98500 0.94662 0.96762 1.21765 1.07215 0.91544 0.96456 1.96704 1.90492 1.10772 1.99330 1.21055 0.98460 0.94654 0.96763 1.21047 0.98627 0.93842 0.98062 1.49351 1.06528 1.02196 1.54931 1.19624 0.77829 0.89794 0.98922 1.21377 1.13227 1.31837 0.91340 0.91676 1.24940 0.95718 0.94862 0.98200 1.69926 1.19211 1.32531 1.31086 0.86307 0.78332 0.78489 0.83634 1.19551 1.20522 1.20617 1.77358 0.86145 1.21808 1.25771 0.91323 0.91166 0.91553 0.82186 0.74665 0.86918 0.87066 0.85059 0.85010 0.84992 0.84992 0.92561 0.93810 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.01 7.21 -82.44 -0.59 0.41 16 3 C -0.30 -5.98 9.58 -39.78 -0.38 -6.36 16 4 C 0.30 6.19 7.66 -153.15 -1.17 5.02 16 5 N -0.64 -10.46 5.42 -11.46 -0.06 -10.53 16 6 C 0.52 7.45 7.79 -10.98 -0.09 7.36 16 7 O -0.51 -8.79 13.16 5.55 0.07 -8.72 16 8 C -0.10 -0.97 5.83 -29.03 -0.17 -1.14 16 9 C -0.05 -0.47 4.37 -104.62 -0.46 -0.93 16 10 C -0.10 -0.95 9.70 -39.59 -0.38 -1.34 16 11 C -0.09 -0.86 9.79 -39.55 -0.39 -1.25 16 12 C -0.09 -0.91 6.22 -39.52 -0.25 -1.16 16 13 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.82 16 14 C -0.09 -0.88 9.79 -39.56 -0.39 -1.27 16 15 C -0.10 -0.97 9.70 -39.59 -0.38 -1.36 16 16 N -0.34 -7.95 3.60 -61.57 -0.22 -8.17 16 17 C 0.26 6.27 6.01 -5.20 -0.03 6.23 16 18 C -0.54 -14.21 9.39 -34.44 -0.32 -14.53 16 19 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -23.87 13.29 55.43 0.74 -23.14 16 22 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 N -0.29 -6.61 12.56 33.65 0.42 -6.19 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.16 3.18 5.83 -52.49 -0.31 2.87 16 31 H 0.42 6.15 7.96 -40.82 -0.33 5.83 16 32 H 0.11 0.86 8.09 -51.92 -0.42 0.44 16 33 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.04 1.02 7.50 -51.93 -0.39 0.64 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -31.77 369.92 -10.30 -42.07 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.79 Total: 5.87 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -4.73 Total: -9.22 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.88 Total: -48.02 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.77 -10.30 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.370 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds