Wall clock time and date at job start Tue Mar 31 2020 05:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31590 * 122.23127 * 2 1 4 4 C 1.29947 * 117.13764 * 179.97438 * 3 2 1 5 5 N 1.38894 * 125.36440 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00261 * 180.02562 * 5 4 3 7 7 O 1.21292 * 119.99870 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00393 * 179.97438 * 6 5 4 9 9 N 1.46906 * 109.47351 * 180.02562 * 8 6 5 10 10 C 1.46901 * 110.99793 * 293.95574 * 9 8 6 11 11 C 1.46898 * 110.99820 * 169.99890 * 9 8 6 12 12 C 1.50706 * 109.46563 * 189.99919 * 11 9 8 13 13 C 1.38237 * 120.00072 * 269.72291 * 12 11 9 14 14 C 1.38233 * 119.99894 * 179.77066 * 13 12 11 15 15 C 1.38236 * 120.00155 * 0.50879 * 14 13 12 16 16 C 1.38235 * 119.99658 * 359.74652 * 15 14 13 17 17 C 1.38234 * 120.00461 * 0.02562 * 16 15 14 18 18 S 1.76141 * 109.27022 * 0.26899 * 4 3 2 19 19 C 1.34655 * 122.23013 * 179.97438 * 2 1 3 20 20 S 1.76198 * 125.93106 * 359.97438 * 19 2 1 21 21 C 1.76199 * 100.00284 * 180.02562 * 20 19 2 22 22 H 1.08005 * 120.00076 * 359.97438 * 21 20 19 23 23 C 1.38431 * 120.00430 * 180.02562 * 21 20 19 24 24 N 1.31810 * 120.00052 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99629 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47001 * 90.00242 * 25 23 21 27 27 H 1.48504 * 109.46993 * 210.00110 * 25 23 21 28 28 H 1.48498 * 109.47127 * 329.99973 * 25 23 21 29 29 H 1.09006 * 109.47239 * 90.02395 * 1 2 3 30 30 H 1.08999 * 109.47257 * 210.02363 * 1 2 3 31 31 H 1.09001 * 109.47079 * 330.02521 * 1 2 3 32 32 H 0.96996 * 120.00085 * 359.97438 * 5 4 3 33 33 H 1.08997 * 109.47055 * 60.00070 * 8 6 5 34 34 H 1.09001 * 109.47156 * 299.99838 * 8 6 5 35 35 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 37 37 H 1.09004 * 109.46970 * 179.97438 * 10 9 8 38 38 H 1.08994 * 109.47410 * 309.99936 * 11 9 8 39 39 H 1.08999 * 109.47216 * 70.00266 * 11 9 8 40 40 H 1.08006 * 119.99586 * 0.02562 * 13 12 11 41 41 H 1.08001 * 119.99865 * 180.23815 * 14 13 12 42 42 H 1.07994 * 120.00441 * 179.72781 * 15 14 13 43 43 H 1.07998 * 120.00212 * 179.97438 * 16 15 14 44 44 H 1.08003 * 120.00362 * 179.97438 * 17 16 15 45 45 H 0.96998 * 119.99522 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4044 2.0546 0.0011 6 6 5.7297 1.8100 0.0011 7 8 6.1355 0.6670 0.0010 8 6 6.7076 2.9566 0.0012 9 7 8.0792 2.4305 0.0005 10 6 8.3717 1.7216 1.2535 11 6 9.0543 3.5030 -0.2376 12 6 10.4152 2.9008 -0.4756 13 6 11.2702 2.6827 0.5885 14 6 12.5166 2.1260 0.3707 15 6 12.9121 1.7971 -0.9124 16 6 12.0591 2.0201 -1.9771 17 6 10.8109 2.5725 -1.7588 18 16 3.9345 -0.7100 -0.0067 19 6 2.2251 -1.1391 0.0005 20 16 1.5696 -2.7746 0.0019 21 6 3.0665 -3.7042 0.0027 22 1 4.0187 -3.1945 0.0019 23 6 3.0221 -5.0878 0.0034 24 7 4.1419 -5.7831 0.0045 25 14 1.3751 -5.9693 0.0041 26 1 0.9385 -6.2036 -1.3958 27 1 1.5111 -7.2716 0.7047 28 1 0.3667 -5.1336 0.7039 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.0799 2.9687 0.0008 33 1 6.5524 3.5664 0.8912 34 1 6.5524 3.5665 -0.8888 35 1 7.6780 0.8890 1.3704 36 1 8.2609 2.4075 2.0933 37 1 9.3932 1.3420 1.2262 38 1 8.7540 4.0795 -1.1126 39 1 9.0940 4.1579 0.6328 40 1 10.9627 2.9435 1.5905 41 1 13.1831 1.9520 1.2025 42 1 13.8875 1.3662 -1.0830 43 1 12.3682 1.7635 -2.9796 44 1 10.1446 2.7471 -2.5907 45 1 4.1107 -6.7526 0.0046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058308567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:12 Heat of formation + Delta-G solvation = 44.489998 kcal Electronic energy + Delta-G solvation = -28047.348250 eV Core-core repulsion = 24090.050444 eV Total energy + Delta-G solvation = -3957.297807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.38841 -39.56665 -38.65655 -36.94676 -34.74455 -32.73790 -32.08886 -31.14018 -30.72183 -28.50725 -27.33897 -27.09630 -25.88112 -24.21729 -22.80270 -22.60066 -21.15749 -20.99454 -19.70547 -18.09948 -17.72695 -17.06611 -16.72226 -16.24258 -15.98761 -15.56559 -15.54179 -15.25237 -15.18936 -14.69006 -14.64974 -14.06220 -14.00537 -13.62300 -13.36058 -13.19705 -13.01160 -12.77302 -12.73164 -12.49853 -12.14022 -12.00464 -11.90446 -11.74770 -11.55794 -11.34024 -11.30181 -11.24280 -11.19116 -10.74005 -10.58154 -10.12404 -9.84460 -9.44525 -9.15725 -9.10499 -9.04545 -8.83989 -8.76089 -8.56463 -7.86898 -6.71294 -6.53802 -4.27114 1.08991 1.20628 1.33313 1.81363 2.45201 2.46896 2.71689 2.85997 3.11477 3.20895 3.38147 3.47803 3.54132 3.90833 4.04367 4.44246 4.49781 4.50807 4.58298 4.79221 4.84525 4.85984 4.87610 4.91785 4.99731 5.13601 5.14071 5.28623 5.33749 5.44838 5.46371 5.76512 5.82508 5.86833 6.00332 6.11458 6.13201 6.22726 6.30755 6.34938 6.37364 6.42101 6.58281 6.71769 6.79451 6.89200 7.16772 7.69059 8.00326 8.25953 8.43920 8.85872 10.54068 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.002134 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.218684 B =13118.575375 C =15187.616795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.483 5.483 4 C 0.195 3.805 5 N -0.619 5.619 6 C 0.504 3.496 7 O -0.480 6.480 8 C 0.047 3.953 9 N -0.518 5.518 10 C 0.012 3.988 11 C 0.095 3.905 12 C -0.078 4.078 13 C -0.112 4.112 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.095 4.095 18 S 0.234 5.766 19 C -0.240 4.240 20 S 0.053 5.947 21 C -0.544 4.544 22 H 0.105 0.895 23 C 0.102 3.898 24 N -0.857 5.857 25 Si 0.852 3.148 26 H -0.261 1.261 27 H -0.265 1.265 28 H -0.236 1.236 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.022 0.978 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 20.732 0.154 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.205 5.205 4 C -0.176 4.176 5 N -0.269 5.269 6 C 0.288 3.712 7 O -0.352 6.352 8 C -0.084 4.084 9 N -0.242 5.242 10 C -0.136 4.136 11 C -0.032 4.032 12 C -0.079 4.079 13 C -0.131 4.131 14 C -0.141 4.141 15 C -0.138 4.138 16 C -0.139 4.139 17 C -0.114 4.114 18 S 0.479 5.521 19 C -0.476 4.476 20 S 0.300 5.700 21 C -0.693 4.693 22 H 0.122 0.878 23 C -0.110 4.110 24 N -0.490 5.490 25 Si 0.676 3.324 26 H -0.186 1.186 27 H -0.190 1.190 28 H -0.160 1.160 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.040 0.960 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.511 18.786 -0.229 21.528 hybrid contribution -0.295 0.928 0.625 1.157 sum 10.216 19.714 0.396 22.207 Atomic orbital electron populations 1.20142 0.88048 1.02173 1.01891 1.19097 0.96759 0.84629 1.10632 1.65867 1.02908 1.32171 1.19518 1.23972 0.89979 0.93494 1.10130 1.42433 1.04447 1.08026 1.71993 1.20755 0.81597 0.91725 0.77106 1.90716 1.76456 1.22279 1.45770 1.21846 0.88666 0.94146 1.03785 1.61624 0.99562 1.26026 1.37014 1.22705 1.04019 0.99216 0.87639 1.21079 0.89101 0.91757 1.01292 1.19640 0.94794 0.99847 0.93572 1.21055 0.94137 0.99529 0.98374 1.21112 0.96449 0.99406 0.97087 1.21167 0.99761 0.99951 0.92938 1.21173 0.94316 0.99323 0.99118 1.21038 0.95942 0.97870 0.96553 1.86220 1.00456 0.94318 1.71081 1.28172 1.01825 1.04451 1.13199 1.82450 1.13511 0.89225 1.84844 1.22659 0.92383 0.94473 1.59742 0.87754 1.24742 0.97345 0.96239 0.92652 1.70013 1.26438 1.07651 1.44937 0.86818 0.83912 0.81355 0.80364 1.18561 1.19006 1.16017 0.91726 0.91114 0.91755 0.74923 0.91185 0.87169 0.88994 0.95972 0.90647 0.89647 0.93665 0.86365 0.86165 0.86220 0.86052 0.85905 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.00 0.36 -0.69 16 2 C 0.03 0.62 6.73 -83.97 -0.57 0.06 16 3 N -0.48 -9.35 10.55 -9.79 -0.10 -9.45 16 4 C 0.19 3.62 8.40 -87.19 -0.73 2.89 16 5 N -0.62 -8.47 5.40 -11.78 -0.06 -8.53 16 6 C 0.50 6.85 7.52 -10.99 -0.08 6.77 16 7 O -0.48 -8.72 11.83 5.55 0.07 -8.65 16 8 C 0.05 0.41 5.45 -4.97 -0.03 0.39 16 9 N -0.52 -5.46 4.49 -245.82 -1.10 -6.56 16 10 C 0.01 0.13 8.87 60.07 0.53 0.67 16 11 C 0.09 0.76 5.12 -4.97 -0.03 0.73 16 12 C -0.08 -0.72 4.88 -104.62 -0.51 -1.23 16 13 C -0.11 -0.99 7.92 -39.58 -0.31 -1.30 16 14 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 15 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 16 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 17 C -0.10 -0.90 9.70 -39.58 -0.38 -1.28 16 18 S 0.23 5.18 18.35 -107.50 -1.97 3.21 16 19 C -0.24 -5.45 6.67 29.46 0.20 -5.25 16 20 S 0.05 1.26 18.70 -107.50 -2.01 -0.75 16 21 C -0.54 -15.24 9.80 30.80 0.30 -14.93 16 22 H 0.10 3.14 6.21 -52.48 -0.33 2.81 16 23 C 0.10 2.83 5.49 -17.49 -0.10 2.73 16 24 N -0.86 -24.90 13.98 55.47 0.78 -24.13 16 25 Si 0.85 19.78 27.73 -169.99 -4.71 15.07 16 26 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.24 -5.24 6.73 56.52 0.38 -4.86 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.41 4.06 8.82 -40.82 -0.36 3.70 16 33 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.11 0.69 7.93 -51.93 -0.41 0.27 16 35 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.86 5.91 -51.93 -0.31 0.55 16 38 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 39 H 0.05 0.30 8.06 -51.93 -0.42 -0.12 16 40 H 0.12 0.88 8.00 -52.48 -0.42 0.46 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.28 7.37 8.32 -40.82 -0.34 7.03 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -33.69 397.86 -11.55 -45.24 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.88 Total: 3.36 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.54 Total: -14.80 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.50 Total: -48.67 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.71 Total: 15.07 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -3.98 Total: 2.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.69 -11.55 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058308567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.729 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds