Wall clock time and date at job start Tue Mar 31 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31597 * 122.22989 * 2 1 4 4 C 1.29942 * 117.13764 * 180.27416 * 3 2 1 5 5 N 1.38897 * 125.36661 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99898 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99680 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.47277 * 327.92670 * 8 6 5 10 10 C 1.50699 * 109.47042 * 87.93426 * 8 6 5 11 11 C 1.38233 * 120.00463 * 73.06338 * 10 8 6 12 12 C 1.38232 * 120.00147 * 179.78997 * 11 10 8 13 13 C 1.38231 * 120.00017 * 0.44191 * 12 11 10 14 14 C 1.38240 * 119.99833 * 359.80754 * 13 12 11 15 15 C 1.38233 * 120.00156 * 359.97438 * 14 13 12 16 16 N 1.46908 * 109.46939 * 207.93240 * 8 6 5 17 17 C 1.46896 * 111.00061 * 61.11153 * 16 8 6 18 18 C 1.46904 * 110.99878 * 185.06571 * 16 8 6 19 19 S 1.76149 * 109.27162 * 359.97438 * 4 3 2 20 20 C 1.34656 * 122.23106 * 180.28955 * 2 1 3 21 21 S 1.76200 * 125.92887 * 359.74694 * 20 2 1 22 22 C 1.76199 * 99.99906 * 179.97438 * 21 20 2 23 23 H 1.07997 * 120.00121 * 0.02562 * 22 21 20 24 24 C 1.38428 * 119.99726 * 179.97438 * 22 21 20 25 25 N 1.31811 * 120.00558 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99578 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46993 * 90.00536 * 26 24 22 28 28 H 1.48507 * 109.46693 * 210.00035 * 26 24 22 29 29 H 1.48499 * 109.47360 * 330.00229 * 26 24 22 30 30 H 1.09002 * 109.47057 * 269.71216 * 1 2 3 31 31 H 1.09003 * 109.47451 * 29.70655 * 1 2 3 32 32 H 1.08995 * 109.47277 * 149.71423 * 1 2 3 33 33 H 0.96992 * 119.99700 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.99427 * 359.97438 * 11 10 8 35 35 H 1.08002 * 119.99616 * 180.27046 * 12 11 10 36 36 H 1.08001 * 120.00366 * 179.83801 * 13 12 11 37 37 H 1.08004 * 119.99964 * 180.02562 * 14 13 12 38 38 H 1.07998 * 120.00307 * 179.97438 * 15 14 13 39 39 H 1.09001 * 109.46877 * 63.95182 * 17 16 8 40 40 H 1.09003 * 109.47046 * 183.95029 * 17 16 8 41 41 H 1.08997 * 109.47180 * 303.95383 * 17 16 8 42 42 H 1.09002 * 109.47008 * 61.14305 * 18 16 8 43 43 H 1.08997 * 109.47098 * 181.14593 * 18 16 8 44 44 H 1.09002 * 109.46788 * 301.15208 * 18 16 8 45 45 H 0.96991 * 120.00460 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0055 5 7 4.4044 2.0547 -0.0060 6 6 5.7297 1.8100 -0.0125 7 8 6.1354 0.6671 -0.0176 8 6 6.7076 2.9567 -0.0136 9 1 6.2784 3.7998 -0.5550 10 6 7.0008 3.3681 1.4062 11 6 7.7903 2.5664 2.2091 12 6 8.0628 2.9459 3.5101 13 6 7.5384 4.1227 4.0110 14 6 6.7447 4.9220 3.2096 15 6 6.4758 4.5447 1.9072 16 7 7.9535 2.5371 -0.6691 17 6 7.7100 2.1531 -2.0660 18 6 8.9742 3.5901 -0.5829 19 16 3.9346 -0.7099 -0.0109 20 6 2.2251 -1.1390 -0.0058 21 16 1.5697 -2.7746 -0.0077 22 6 3.0665 -3.7041 -0.0166 23 1 4.0187 -3.1944 -0.0187 24 6 3.0220 -5.0876 -0.0198 25 7 1.8600 -5.7098 -0.0168 26 14 4.6090 -6.0730 -0.0285 27 1 5.0350 -6.3377 1.3692 28 1 4.3871 -7.3625 -0.7309 29 1 5.6664 -5.3024 -0.7308 30 1 -0.3633 -0.0052 1.0277 31 1 -0.3634 0.8926 -0.5093 32 1 -0.3633 -0.8874 -0.5182 33 1 4.0799 2.9687 -0.0016 34 1 8.1966 1.6449 1.8190 35 1 8.6832 2.3216 4.1360 36 1 7.7491 4.4180 5.0282 37 1 6.3352 5.8417 3.6008 38 1 5.8554 5.1688 1.2813 39 1 7.3644 3.0217 -2.6265 40 1 8.6347 1.7806 -2.5069 41 1 6.9504 1.3723 -2.1010 42 1 9.2006 3.7918 0.4641 43 1 9.8794 3.2614 -1.0935 44 1 8.6000 4.4984 -1.0551 45 1 1.8289 -6.6792 -0.0187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058392907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:05 Heat of formation + Delta-G solvation = 44.889384 kcal Electronic energy + Delta-G solvation = -29165.896961 eV Core-core repulsion = 25208.616472 eV Total energy + Delta-G solvation = -3957.280488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84833 -39.22442 -38.47830 -36.98678 -34.71471 -32.80322 -32.22449 -31.11566 -30.50280 -28.28058 -27.44583 -27.03708 -25.74887 -24.09209 -23.03253 -22.60383 -21.69929 -20.75761 -19.50005 -18.11858 -17.69776 -17.26327 -16.84087 -16.16043 -15.95602 -15.56305 -15.10762 -15.07864 -15.04480 -14.60764 -14.54041 -14.06418 -13.85252 -13.61382 -13.36639 -13.17927 -13.03230 -12.71685 -12.66114 -12.52124 -12.22931 -12.08172 -11.86578 -11.78615 -11.37102 -11.30179 -11.26512 -11.24210 -11.04988 -10.76904 -10.53911 -10.24394 -9.92317 -9.50919 -9.14294 -9.08435 -8.93984 -8.72929 -8.69464 -8.61402 -7.78144 -6.58248 -6.48309 -4.25921 0.98808 1.19298 1.41616 1.90040 2.45555 2.54710 2.76531 3.09951 3.11820 3.18885 3.37103 3.44112 3.63703 3.78806 4.00142 4.30936 4.53145 4.57261 4.77002 4.80906 4.84414 4.89937 5.00031 5.05641 5.06848 5.23038 5.23746 5.32448 5.33240 5.39520 5.62571 5.67352 5.80044 5.84327 5.99335 6.15739 6.18533 6.24520 6.27811 6.31254 6.45372 6.50041 6.57772 6.66687 6.75377 6.98192 7.21062 7.35144 7.99651 8.06303 8.53666 8.90450 10.47564 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.002753 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.625834 B =10167.982873 C =11104.086176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.476 5.476 4 C 0.189 3.811 5 N -0.615 5.615 6 C 0.513 3.487 7 O -0.479 6.479 8 C 0.122 3.878 9 H 0.070 0.930 10 C -0.089 4.089 11 C -0.079 4.079 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.123 4.123 15 C -0.109 4.109 16 N -0.519 5.519 17 C 0.018 3.982 18 C 0.026 3.974 19 S 0.202 5.798 20 C -0.251 4.251 21 S 0.148 5.852 22 C -0.555 4.555 23 H 0.089 0.911 24 C 0.082 3.918 25 N -0.863 5.863 26 Si 0.924 3.076 27 H -0.271 1.271 28 H -0.278 1.278 29 H -0.264 1.264 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 21.175 1.788 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.197 5.197 4 C -0.182 4.182 5 N -0.264 5.264 6 C 0.296 3.704 7 O -0.350 6.350 8 C 0.010 3.990 9 H 0.088 0.912 10 C -0.090 4.090 11 C -0.097 4.097 12 C -0.141 4.141 13 C -0.131 4.131 14 C -0.141 4.141 15 C -0.127 4.127 16 N -0.243 5.243 17 C -0.130 4.130 18 C -0.122 4.122 19 S 0.446 5.554 20 C -0.488 4.488 21 S 0.398 5.602 22 C -0.704 4.704 23 H 0.107 0.893 24 C -0.129 4.129 25 N -0.497 5.497 26 Si 0.748 3.252 27 H -0.196 1.196 28 H -0.203 1.203 29 H -0.188 1.188 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.942 19.107 2.003 22.109 hybrid contribution 0.785 1.158 -0.396 1.454 sum 11.727 20.264 1.607 23.468 Atomic orbital electron populations 1.20113 0.88084 1.02073 1.01781 1.19026 0.96674 0.84594 1.12049 1.65809 1.02828 1.32400 1.18675 1.23744 0.89825 0.92864 1.11732 1.42380 1.04358 1.08049 1.71613 1.20416 0.81532 0.91164 0.77272 1.90713 1.76650 1.21756 1.45924 1.20305 0.90566 0.94107 0.93980 0.91187 1.19299 1.00267 0.95851 0.93584 1.21187 0.95992 0.99390 0.93121 1.21234 1.00368 0.96879 0.95653 1.21234 0.97288 0.94843 0.99729 1.21071 0.99089 1.00081 0.93887 1.21012 0.99645 0.95902 0.96172 1.61702 1.06678 1.39501 1.16469 1.22522 1.03395 1.00269 0.86772 1.22443 0.94879 0.91982 1.02897 1.85852 1.01710 0.95323 1.72521 1.28770 1.01329 1.06709 1.12010 1.83065 1.11048 0.84430 1.81627 1.23259 0.93573 0.94031 1.59552 0.89335 1.25020 0.98246 0.96664 0.92929 1.70010 1.24396 1.10299 1.44966 0.86045 0.81311 0.78778 0.79043 1.19607 1.20291 1.18843 0.91899 0.91967 0.91056 0.75111 0.84584 0.85764 0.86026 0.85865 0.85985 0.95503 0.90416 0.90416 0.90733 0.90750 0.95467 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.02 0.40 6.73 -83.96 -0.57 -0.16 16 3 N -0.48 -9.61 10.55 -9.78 -0.10 -9.72 16 4 C 0.19 3.67 8.40 -87.19 -0.73 2.93 16 5 N -0.61 -9.17 5.40 -11.78 -0.06 -9.24 16 6 C 0.51 7.52 5.79 -10.99 -0.06 7.46 16 7 O -0.48 -8.80 13.20 5.55 0.07 -8.73 16 8 C 0.12 1.32 2.07 -70.01 -0.14 1.18 16 9 H 0.07 0.60 7.94 -51.93 -0.41 0.18 16 10 C -0.09 -0.93 3.56 -104.62 -0.37 -1.30 16 11 C -0.08 -0.88 8.36 -39.59 -0.33 -1.22 16 12 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 13 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 14 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 15 C -0.11 -0.95 9.67 -39.58 -0.38 -1.33 16 16 N -0.52 -5.59 4.15 -245.99 -1.02 -6.61 16 17 C 0.02 0.19 9.29 60.06 0.56 0.75 16 18 C 0.03 0.21 9.14 60.07 0.55 0.76 16 19 S 0.20 4.49 18.35 -107.50 -1.97 2.52 16 20 C -0.25 -5.85 6.67 29.46 0.20 -5.66 16 21 S 0.15 3.75 20.74 -107.50 -2.23 1.52 16 22 C -0.56 -15.25 9.26 30.80 0.29 -14.96 16 23 H 0.09 2.42 5.97 -52.49 -0.31 2.11 16 24 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 25 N -0.86 -23.94 13.22 55.47 0.73 -23.21 16 26 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 33 H 0.41 4.77 8.82 -40.82 -0.36 4.41 16 34 H 0.14 1.72 7.93 -52.49 -0.42 1.30 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.12 0.79 7.99 -52.49 -0.42 0.37 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.02 6.39 -51.93 -0.33 0.68 16 42 H 0.07 0.62 6.37 -51.93 -0.33 0.29 16 43 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.28 7.12 8.32 -40.82 -0.34 6.78 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -32.07 401.20 -11.40 -43.47 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.91 Total: 2.62 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.93 Total: -14.51 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.45 Total: -48.77 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 8.24 SS G_CDS: -4.20 Total: 4.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.07 -11.40 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058392907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.362 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds