Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31585 * 122.22892 * 2 1 4 4 C 1.29953 * 117.13671 * 180.02562 * 3 2 1 5 5 N 1.38892 * 125.36130 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99705 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99975 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00105 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.47293 * 39.99260 * 8 6 5 10 10 C 1.50703 * 109.47029 * 279.99923 * 8 6 5 11 11 C 1.38234 * 120.00040 * 279.72863 * 10 8 6 12 12 C 1.38232 * 120.00086 * 179.80983 * 11 10 8 13 13 C 1.38234 * 120.00100 * 0.39105 * 12 11 10 14 14 C 1.38239 * 119.99862 * 359.86061 * 13 12 11 15 15 C 1.38235 * 119.99859 * 99.99620 * 10 8 6 16 16 N 1.46899 * 109.47419 * 160.00151 * 8 6 5 17 17 C 1.46896 * 111.00124 * 179.97438 * 16 8 6 18 18 C 1.46909 * 110.99433 * 303.95035 * 16 8 6 19 19 S 1.76143 * 109.26988 * 359.97438 * 4 3 2 20 20 C 1.34665 * 122.22920 * 180.02562 * 2 1 3 21 21 S 1.76196 * 125.93108 * 359.71480 * 20 2 1 22 22 C 1.76198 * 99.99936 * 180.02562 * 21 20 2 23 23 H 1.08008 * 120.00067 * 359.97438 * 22 21 20 24 24 C 1.38424 * 120.00129 * 179.97438 * 22 21 20 25 25 N 1.31817 * 120.00437 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00123 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46924 * 89.99846 * 26 24 22 28 28 H 1.48497 * 109.47328 * 210.00061 * 26 24 22 29 29 H 1.48500 * 109.47237 * 330.00560 * 26 24 22 30 30 H 1.09006 * 109.46802 * 269.97508 * 1 2 3 31 31 H 1.08998 * 109.47394 * 29.97446 * 1 2 3 32 32 H 1.09003 * 109.47003 * 149.98428 * 1 2 3 33 33 H 0.97000 * 120.00618 * 359.97438 * 5 4 3 34 34 H 1.08001 * 120.00001 * 359.97438 * 11 10 8 35 35 H 1.07998 * 120.00059 * 180.22883 * 12 11 10 36 36 H 1.08001 * 120.00013 * 179.83240 * 13 12 11 37 37 H 1.08005 * 119.99946 * 179.97438 * 14 13 12 38 38 H 1.07995 * 120.00222 * 359.97438 * 15 10 8 39 39 H 1.09000 * 109.47202 * 63.94867 * 17 16 8 40 40 H 1.08992 * 109.47147 * 183.95048 * 17 16 8 41 41 H 1.08996 * 109.46906 * 303.95106 * 17 16 8 42 42 H 1.08997 * 109.47123 * 56.04685 * 18 16 8 43 43 H 1.09006 * 109.46321 * 176.04687 * 18 16 8 44 44 H 1.08996 * 109.46985 * 296.04626 * 18 16 8 45 45 H 0.96995 * 120.00374 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1131 0.0000 4 6 3.5032 0.9978 -0.0005 5 7 4.4043 2.0546 -0.0011 6 6 5.7298 1.8100 -0.0011 7 8 6.1355 0.6670 -0.0001 8 6 6.7076 2.9567 -0.0012 9 1 6.3443 3.7441 0.6593 10 6 6.8458 3.4989 -1.4005 11 6 7.6607 2.8560 -2.3135 12 6 7.7845 3.3511 -3.5981 13 6 7.0996 4.4937 -3.9675 14 6 6.2888 5.1395 -3.0529 15 6 6.1621 4.6423 -1.7693 16 7 8.0156 2.4848 0.4725 17 6 8.9966 3.5782 0.4853 18 6 7.9022 1.8631 1.7987 19 16 3.9346 -0.7100 -0.0003 20 6 2.2252 -1.1392 -0.0005 21 16 1.5697 -2.7746 0.0059 22 6 3.0666 -3.7042 0.0024 23 1 4.0188 -3.1944 -0.0029 24 6 3.0222 -5.0877 0.0064 25 7 4.1420 -5.7831 0.0033 26 14 1.3754 -5.9693 0.0162 27 1 0.9327 -6.2068 -1.3814 28 1 1.5144 -7.2700 0.7191 29 1 0.3698 -5.1321 0.7183 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8899 -0.5141 33 1 4.0799 2.9688 -0.0015 34 1 8.1986 1.9654 -2.0238 35 1 8.4182 2.8468 -4.3125 36 1 7.1984 4.8820 -4.9704 37 1 5.7541 6.0325 -3.3414 38 1 5.5285 5.1467 -1.0549 39 1 8.6844 4.3381 1.2016 40 1 9.9726 3.1872 0.7726 41 1 9.0607 4.0204 -0.5089 42 1 7.1696 1.0570 1.7606 43 1 8.8708 1.4603 2.0951 44 1 7.5822 2.6109 2.5243 45 1 4.1109 -6.7526 0.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058392908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = 49.646190 kcal Electronic energy + Delta-G solvation = -29174.448569 eV Core-core repulsion = 25217.374351 eV Total energy + Delta-G solvation = -3957.074218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89630 -39.25606 -38.58994 -36.95459 -34.79821 -32.74434 -32.23741 -31.10500 -30.59222 -28.26215 -27.41931 -27.10570 -25.88880 -24.15698 -23.02714 -22.55505 -21.75286 -20.82872 -19.58938 -18.13686 -17.76431 -17.27004 -16.85932 -16.14913 -15.95820 -15.58771 -15.31866 -15.09650 -15.02871 -14.60359 -14.52852 -14.08365 -13.97089 -13.60072 -13.37111 -13.20778 -13.05700 -12.76475 -12.67209 -12.48140 -12.27781 -12.10908 -11.99957 -11.70375 -11.56505 -11.33362 -11.31493 -11.28938 -11.22798 -10.79240 -10.57241 -10.13122 -9.97279 -9.45520 -9.19279 -9.12752 -8.94302 -8.84692 -8.76853 -8.64038 -7.88202 -6.72056 -6.54469 -4.27820 0.99221 1.20076 1.32450 1.79639 2.40396 2.45087 2.69617 2.84670 3.11030 3.20603 3.37833 3.45553 3.53383 3.76950 4.03847 4.31599 4.49485 4.51571 4.57624 4.78023 4.81958 4.85334 4.91322 5.03682 5.10936 5.12520 5.24909 5.37512 5.38654 5.41547 5.63857 5.68046 5.85154 5.86293 5.92106 6.07221 6.12538 6.19399 6.28614 6.32046 6.33986 6.40220 6.59244 6.71031 6.76397 6.87622 7.13537 7.68330 7.94260 8.25050 8.43005 8.85170 10.53359 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.002587 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.547609 B =10820.985687 C =11532.539930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.481 5.481 4 C 0.194 3.806 5 N -0.614 5.614 6 C 0.513 3.487 7 O -0.476 6.476 8 C 0.122 3.878 9 H 0.073 0.927 10 C -0.090 4.090 11 C -0.079 4.079 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.123 4.123 15 C -0.110 4.110 16 N -0.519 5.519 17 C 0.025 3.975 18 C 0.012 3.988 19 S 0.234 5.766 20 C -0.239 4.239 21 S 0.054 5.946 22 C -0.544 4.544 23 H 0.105 0.895 24 C 0.102 3.898 25 N -0.857 5.857 26 Si 0.852 3.148 27 H -0.261 1.261 28 H -0.265 1.265 29 H -0.236 1.236 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 22.076 -1.713 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.203 5.203 4 C -0.176 4.176 5 N -0.264 5.264 6 C 0.297 3.703 7 O -0.348 6.348 8 C 0.010 3.990 9 H 0.091 0.909 10 C -0.091 4.091 11 C -0.097 4.097 12 C -0.141 4.141 13 C -0.131 4.131 14 C -0.141 4.141 15 C -0.129 4.129 16 N -0.244 5.244 17 C -0.123 4.123 18 C -0.135 4.135 19 S 0.479 5.521 20 C -0.475 4.475 21 S 0.301 5.699 22 C -0.693 4.693 23 H 0.122 0.878 24 C -0.109 4.109 25 N -0.490 5.490 26 Si 0.675 3.325 27 H -0.186 1.186 28 H -0.190 1.190 29 H -0.160 1.160 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.036 20.089 -2.009 21.073 hybrid contribution -0.548 1.071 0.529 1.315 sum 5.487 21.161 -1.480 21.911 Atomic orbital electron populations 1.20145 0.88016 1.02197 1.01893 1.19103 0.96769 0.84601 1.10611 1.65861 1.02868 1.32184 1.19370 1.23952 0.89975 0.93389 1.10307 1.42392 1.04349 1.08073 1.71537 1.20462 0.81572 0.91185 0.77127 1.90722 1.76533 1.21804 1.45721 1.20291 0.90173 0.93520 0.95060 0.90922 1.19330 0.99728 0.96257 0.93735 1.21190 0.96717 0.99436 0.92349 1.21242 1.00024 0.96518 0.96342 1.21234 0.96713 0.95714 0.99474 1.21069 0.99307 1.00306 0.93373 1.21001 0.99284 0.95630 0.96960 1.61696 1.05345 1.30009 1.27314 1.22457 0.95741 0.92202 1.01915 1.22639 1.04247 0.99530 0.87093 1.86181 1.00560 0.94242 1.71090 1.28171 1.01734 1.04472 1.13164 1.82457 1.13498 0.89183 1.84773 1.22658 0.92382 0.94481 1.59751 0.87755 1.24737 0.97346 0.96229 0.92635 1.70011 1.26442 1.07660 1.44914 0.86821 0.83918 0.81379 0.80369 1.18566 1.18992 1.15985 0.91725 0.91732 0.91098 0.75016 0.84487 0.85763 0.86042 0.85864 0.85999 0.95491 0.90639 0.90818 0.89400 0.90496 0.95747 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.01 0.36 -0.69 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.07 16 3 N -0.48 -9.42 10.55 -9.78 -0.10 -9.52 16 4 C 0.19 3.69 8.40 -87.19 -0.73 2.95 16 5 N -0.61 -9.01 5.40 -11.78 -0.06 -9.07 16 6 C 0.51 7.50 6.15 -10.98 -0.07 7.43 16 7 O -0.48 -8.78 12.23 5.55 0.07 -8.71 16 8 C 0.12 1.32 2.08 -70.02 -0.15 1.17 16 9 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 10 C -0.09 -0.93 3.73 -104.62 -0.39 -1.32 16 11 C -0.08 -0.87 8.41 -39.58 -0.33 -1.21 16 12 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 13 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 14 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 15 C -0.11 -0.95 9.67 -39.58 -0.38 -1.34 16 16 N -0.52 -5.71 3.93 -246.00 -0.97 -6.68 16 17 C 0.02 0.20 9.26 60.06 0.56 0.76 16 18 C 0.01 0.14 9.19 60.07 0.55 0.69 16 19 S 0.23 5.19 18.35 -107.50 -1.97 3.22 16 20 C -0.24 -5.43 6.67 29.47 0.20 -5.23 16 21 S 0.05 1.28 18.71 -107.50 -2.01 -0.73 16 22 C -0.54 -15.19 9.80 30.80 0.30 -14.89 16 23 H 0.10 3.13 6.21 -52.48 -0.33 2.80 16 24 C 0.10 2.83 5.49 -17.49 -0.10 2.73 16 25 N -0.86 -24.79 13.98 55.47 0.78 -24.02 16 26 Si 0.85 19.71 27.73 -169.99 -4.71 15.00 16 27 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H -0.24 -5.22 6.73 56.52 0.38 -4.84 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 33 H 0.41 4.67 8.82 -40.82 -0.36 4.31 16 34 H 0.14 1.68 7.71 -52.49 -0.40 1.28 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.12 0.78 8.04 -52.49 -0.42 0.36 16 39 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 42 H 0.09 1.24 5.68 -51.93 -0.29 0.94 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.28 7.34 8.32 -40.82 -0.34 7.00 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -32.43 397.10 -10.84 -43.27 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.90 Total: 4.46 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.94 Total: -13.20 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.36 Total: -49.29 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 15.00 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -3.98 Total: 2.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.43 -10.84 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058392908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.918 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds