Wall clock time and date at job start Tue Mar 31 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47060 * 2 1 4 4 C 1.34783 * 120.00012 * 180.02562 * 3 2 1 5 5 O 1.21617 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.47290 * 119.99943 * 180.02562 * 4 3 2 7 7 C 1.37961 * 126.80897 * 359.96667 * 6 4 3 8 8 N 1.34165 * 107.88645 * 180.02562 * 7 6 4 9 9 C 1.46498 * 125.16075 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46944 * 124.99840 * 9 8 7 11 11 H 1.08002 * 119.99616 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99771 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00140 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47035 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47200 * 119.99885 * 14 12 10 17 17 H 1.48504 * 109.47209 * 239.99843 * 14 12 10 18 18 N 1.39775 * 109.67089 * 359.78152 * 8 7 6 19 19 C 1.31364 * 109.08246 * 0.37426 * 18 8 7 20 20 C 1.48289 * 126.51466 * 179.90337 * 19 18 8 21 21 C 1.39405 * 120.11946 * 324.69241 * 20 19 18 22 22 C 1.37992 * 119.89623 * 179.97438 * 21 20 19 23 23 C 1.38338 * 120.13283 * 359.97438 * 22 21 20 24 24 C 1.38395 * 120.24161 * 0.02562 * 23 22 21 25 25 Br 1.89101 * 119.94412 * 180.02562 * 24 23 22 26 26 C 1.38116 * 120.10748 * 359.97438 * 24 23 22 27 27 H 1.08996 * 109.47598 * 300.00293 * 1 2 3 28 28 H 1.09007 * 109.46831 * 60.00151 * 1 2 3 29 29 H 1.09002 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47266 * 239.99705 * 2 1 3 31 31 H 1.08999 * 109.46729 * 119.99527 * 2 1 3 32 32 H 0.97000 * 120.00433 * 359.97438 * 3 2 1 33 33 H 1.07995 * 126.05840 * 0.04288 * 7 6 4 34 34 H 1.08995 * 109.46774 * 244.99419 * 9 8 7 35 35 H 1.08995 * 109.47299 * 5.00040 * 9 8 7 36 36 H 0.97001 * 119.99912 * 180.02562 * 13 12 10 37 37 H 1.08004 * 120.05112 * 359.69655 * 21 20 19 38 38 H 1.08000 * 119.93579 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.87425 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.07246 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1338 0.7031 -0.0005 6 6 3.8344 3.0162 0.0000 7 6 3.0685 4.1636 0.0005 8 7 3.9017 5.2152 0.0003 9 6 3.4869 6.6202 0.0012 10 6 4.1271 7.3322 1.1650 11 1 4.7775 6.7919 1.8370 12 6 3.8817 8.6730 1.3725 13 7 3.0893 9.3306 0.5545 14 14 4.6746 9.5553 2.8154 15 1 5.5152 8.5987 3.5793 16 1 5.5215 10.6662 2.3116 17 1 3.6170 10.1024 3.7029 18 7 5.2255 4.7666 0.0049 19 6 5.2338 3.4530 -0.0003 20 6 6.4311 2.5781 -0.0001 21 6 7.5786 2.9627 -0.6920 22 6 8.6904 2.1454 -0.6882 23 6 8.6683 0.9461 0.0009 24 6 7.5321 0.5587 0.6896 25 35 7.5114 -1.0821 1.6294 26 6 6.4138 1.3692 0.6926 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3880 2.1185 -0.0004 33 1 1.9894 4.2077 0.0011 34 1 3.8001 7.0920 -0.9301 35 1 2.4023 6.6788 0.0916 36 1 2.9169 10.2740 0.7002 37 1 7.5959 3.8969 -1.2338 38 1 9.5796 2.4425 -1.2244 39 1 9.5410 0.3097 0.0013 40 1 5.5273 1.0662 1.2299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058433899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:43 Heat of formation + Delta-G solvation = 58.177390 kcal Electronic energy + Delta-G solvation = -25213.313026 eV Core-core repulsion = 21461.551391 eV Total energy + Delta-G solvation = -3751.761635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73598 -38.90001 -38.75942 -35.16881 -33.96364 -32.65348 -31.85555 -31.27573 -30.35146 -29.43824 -28.84412 -27.11695 -23.87980 -23.77379 -22.55801 -22.04293 -21.49012 -19.79056 -19.33366 -17.55608 -16.81401 -16.42998 -15.85243 -15.56055 -15.40495 -15.06003 -14.96562 -14.44074 -14.22738 -13.75480 -13.73135 -13.31532 -13.19162 -13.11651 -12.61180 -12.43271 -12.36098 -11.94170 -11.90360 -11.60046 -11.32002 -11.16223 -11.03666 -10.95514 -10.74164 -10.41045 -10.26836 -10.14083 -9.90656 -9.61531 -9.22993 -8.96970 -8.76864 -8.51086 -8.41092 -7.84843 -6.39413 -4.45402 1.11640 1.45690 1.78679 1.99505 2.72353 3.09351 3.14759 3.23307 3.30800 3.41753 3.69436 3.99813 4.20406 4.60700 4.86431 4.89699 4.97497 4.97924 5.07572 5.16829 5.20164 5.36863 5.44548 5.55645 5.59558 5.71411 5.80347 5.82917 5.90827 5.95351 6.08800 6.33121 6.43773 6.51293 6.59528 6.74071 6.78384 6.91362 7.04041 7.45140 7.62355 7.66607 7.71667 8.23024 8.52831 8.62686 9.21872 10.69585 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.003074 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.444677 B = 9107.408552 C =11417.536844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.736 5.736 4 C 0.598 3.402 5 O -0.543 6.543 6 C -0.312 4.312 7 C 0.100 3.900 8 N -0.309 5.309 9 C 0.249 3.751 10 C -0.534 4.534 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.893 5.893 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.281 1.281 18 N -0.256 5.256 19 C 0.134 3.866 20 C -0.003 4.003 21 C -0.076 4.076 22 C -0.128 4.128 23 C -0.089 4.089 24 C -0.099 4.099 25 Br -0.062 7.062 26 C -0.029 4.029 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.176 0.824 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.269 0.731 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -18.974 -1.668 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.388 5.388 4 C 0.388 3.612 5 O -0.422 6.422 6 C -0.328 4.328 7 C -0.054 4.054 8 N -0.085 5.085 9 C 0.133 3.867 10 C -0.572 4.572 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.207 1.207 18 N -0.077 5.077 19 C -0.033 4.033 20 C -0.006 4.006 21 C -0.095 4.095 22 C -0.147 4.147 23 C -0.109 4.109 24 C -0.178 4.178 25 Br 0.023 6.977 26 C -0.049 4.049 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.137 -18.797 -1.351 18.966 hybrid contribution -0.721 0.794 0.430 1.156 sum 1.416 -18.003 -0.920 18.082 Atomic orbital electron populations 1.22011 0.94791 1.02952 1.02544 1.21208 0.93816 0.83258 1.02234 1.45889 1.07052 1.08498 1.77383 1.17274 0.81529 0.87543 0.74843 1.90716 1.54500 1.45856 1.51178 1.20931 0.92345 0.92326 1.27221 1.22905 0.97365 0.87166 0.97950 1.49266 1.02193 1.08748 1.48247 1.19965 0.96710 0.70037 1.00023 1.21233 1.30064 0.94808 1.11093 0.91035 1.24926 0.94860 0.96959 0.97071 1.69913 1.35942 1.10145 1.37066 0.86258 0.79199 0.79488 0.81554 1.19404 1.20535 1.20659 1.77469 0.98964 1.09612 1.21676 1.21577 0.91139 0.90498 1.00120 1.17628 0.90914 0.93063 0.99027 1.21391 0.91805 0.99298 0.97040 1.20968 0.98656 0.94338 1.00735 1.21103 0.96654 0.96878 0.96294 1.21541 0.97564 0.94432 1.04286 1.96623 1.99162 1.27111 1.74764 1.21561 0.96592 0.91034 0.95763 0.91962 0.92029 0.91041 0.91719 0.91655 0.76913 0.80692 0.93034 0.92264 0.92186 0.85039 0.85172 0.85451 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.03 37.16 0.37 -0.76 16 2 C 0.12 1.17 6.39 -4.04 -0.03 1.14 16 3 N -0.74 -8.57 5.55 -61.43 -0.34 -8.91 16 4 C 0.60 9.36 7.67 -12.58 -0.10 9.27 16 5 O -0.54 -9.63 12.44 5.26 0.07 -9.57 16 6 C -0.31 -5.39 6.26 -102.95 -0.64 -6.04 16 7 C 0.10 1.66 10.89 -16.63 -0.18 1.48 16 8 N -0.31 -6.37 3.62 -62.04 -0.22 -6.59 16 9 C 0.25 5.74 6.21 -5.19 -0.03 5.70 16 10 C -0.53 -13.91 9.20 -34.44 -0.32 -14.23 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 14 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 N -0.26 -5.52 12.27 34.57 0.42 -5.10 16 19 C 0.13 2.59 6.94 -80.56 -0.56 2.03 16 20 C 0.00 -0.06 5.73 -104.92 -0.60 -0.66 16 21 C -0.08 -1.17 9.76 -39.24 -0.38 -1.56 16 22 C -0.13 -1.65 10.03 -39.63 -0.40 -2.05 16 23 C -0.09 -1.16 9.78 -39.49 -0.39 -1.54 16 24 C -0.10 -1.47 6.22 -39.57 -0.25 -1.72 16 25 Br -0.06 -0.82 33.69 -68.01 -2.29 -3.11 16 26 C -0.03 -0.48 7.51 -39.21 -0.29 -0.78 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 3.71 7.43 -40.82 -0.30 3.41 16 33 H 0.18 2.09 7.48 -52.49 -0.39 1.70 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.15 2.74 5.64 -52.49 -0.30 2.45 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -30.09 367.55 -9.76 -39.85 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.76 Total: 3.66 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.89 Total: -8.10 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.60 Total: -43.78 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -2.29 Total: -3.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.09 -9.76 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058433899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.027 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds