Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31234 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48495 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47051 * 300.00379 * 3 2 1 6 6 H 1.48506 * 109.47142 * 59.99862 * 3 2 1 7 7 C 1.39168 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99950 * 179.97438 * 7 2 1 9 9 N 1.36358 * 119.99686 * 359.93760 * 7 2 1 10 10 N 1.38411 * 117.11887 * 8.83178 * 9 7 2 11 11 C 1.30165 * 124.63186 * 201.24917 * 10 9 7 12 12 C 1.46337 * 120.34719 * 179.08342 * 11 10 9 13 13 O 1.21734 * 119.99987 * 67.71063 * 12 11 10 14 14 N 1.34777 * 120.00356 * 247.71430 * 12 11 10 15 15 C 1.44578 * 118.64543 * 174.83669 * 14 12 11 16 16 C 1.54866 * 109.57883 * 270.73046 * 15 14 12 17 17 C 1.47048 * 110.32247 * 288.68078 * 16 15 14 18 18 C 1.52564 * 114.29293 * 62.87825 * 17 16 15 19 19 C 1.50882 * 109.35191 * 274.94163 * 18 17 16 20 20 C 1.47611 * 118.63968 * 354.85866 * 14 12 11 21 21 S 1.76683 * 119.31182 * 358.81181 * 11 10 9 22 22 O 1.42093 * 106.67530 * 99.00789 * 21 11 10 23 23 O 1.42104 * 106.67269 * 232.65217 * 21 11 10 24 24 C 1.76518 * 105.45387 * 345.82880 * 21 11 10 25 25 C 1.37688 * 120.56370 * 194.15682 * 24 21 11 26 26 C 1.38429 * 119.88750 * 179.82982 * 25 24 21 27 27 C 1.38334 * 119.90609 * 359.95649 * 26 25 24 28 28 C 1.37928 * 120.36311 * 0.10710 * 27 26 25 29 29 C 1.38788 * 117.03874 * 188.59577 * 9 7 2 30 30 H 0.96998 * 119.99477 * 4.98642 * 1 2 3 31 31 H 1.09000 * 109.44450 * 30.75654 * 15 14 12 32 32 H 1.08997 * 109.45017 * 150.70213 * 15 14 12 33 33 H 1.09005 * 109.32984 * 48.99519 * 16 15 14 34 34 H 1.09003 * 109.32828 * 168.46717 * 16 15 14 35 35 H 1.09009 * 108.55358 * 301.61781 * 17 16 15 36 36 H 1.08991 * 108.38075 * 184.01950 * 17 16 15 37 37 H 1.08997 * 109.48798 * 154.97849 * 18 17 16 38 38 H 1.08998 * 109.49176 * 34.90465 * 18 17 16 39 39 H 1.08998 * 109.36835 * 331.70014 * 19 18 17 40 40 H 1.08993 * 109.36547 * 212.08097 * 19 18 17 41 41 H 1.08996 * 108.94432 * 258.54870 * 20 14 12 42 42 H 1.09000 * 108.94720 * 17.26581 * 20 14 12 43 43 H 1.08005 * 120.05661 * 359.84748 * 25 24 21 44 44 H 1.08000 * 120.04210 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.81636 * 180.09004 * 27 26 25 46 46 H 1.08005 * 119.95338 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 3.7063 1.3463 -0.0006 5 1 1.8876 2.3964 -1.2125 6 1 1.8876 2.3965 1.2125 7 6 2.0082 -1.2052 0.0005 8 1 3.0882 -1.2052 0.0001 9 7 1.3264 -2.3861 0.0024 10 7 -0.0435 -2.3240 -0.1856 11 6 -0.8817 -3.2547 0.1685 12 6 -2.3171 -3.0822 -0.0579 13 8 -2.7567 -3.0656 -1.1930 14 7 -3.1526 -2.9414 0.9903 15 6 -4.5470 -2.6599 0.7322 16 6 -4.7615 -1.1282 0.6546 17 6 -4.6331 -0.5261 1.9900 18 6 -3.2515 -0.6815 2.6183 19 6 -3.1666 -2.0168 3.3155 20 6 -2.6060 -3.0806 2.3544 21 16 -0.2678 -4.7319 0.9187 22 8 -0.4426 -4.5802 2.3206 23 8 -0.8025 -5.8190 0.1760 24 6 1.4721 -4.7224 0.6212 25 6 2.2217 -5.8610 0.8147 26 6 3.5847 -5.8388 0.5737 27 6 4.1893 -4.6731 0.1385 28 6 3.4417 -3.5303 -0.0552 29 6 2.0696 -3.5435 0.1876 30 1 -0.4849 0.8369 -0.0730 31 1 -4.8403 -3.1159 -0.2134 32 1 -5.1554 -3.0712 1.5377 33 1 -4.0164 -0.6928 -0.0115 34 1 -5.7571 -0.9227 0.2612 35 1 -5.3675 -0.9873 2.6505 36 1 -4.8598 0.5370 1.9109 37 1 -3.0891 0.1175 3.3417 38 1 -2.4901 -0.6284 1.8402 39 1 -4.1614 -2.3162 3.6455 40 1 -2.5111 -1.9311 4.1820 41 1 -2.8564 -4.0701 2.7367 42 1 -1.5213 -2.9817 2.3128 43 1 1.7471 -6.7700 1.1536 44 1 4.1752 -6.7303 0.7251 45 1 5.2525 -4.6578 -0.0505 46 1 3.9204 -2.6240 -0.3956 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065183278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 9.759049 kcal Electronic energy + Delta-G solvation = -34893.647745 eV Core-core repulsion = 30492.091020 eV Total energy + Delta-G solvation = -4401.556725 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.124 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.85593 -39.55730 -37.22915 -36.89795 -36.49871 -35.38521 -33.65156 -33.30524 -32.40185 -32.01469 -30.91818 -29.14978 -27.08922 -25.66047 -25.05035 -24.01462 -22.82067 -21.89675 -20.95099 -20.09992 -19.25598 -19.05075 -17.97742 -17.57136 -17.14728 -16.41280 -16.01675 -15.59744 -15.39400 -15.04823 -14.90563 -14.54811 -14.34718 -14.08003 -13.93835 -13.77844 -13.65137 -13.43685 -13.06207 -12.71691 -12.50379 -12.32431 -12.18409 -12.07101 -11.99512 -11.73004 -11.54725 -11.49814 -11.43335 -11.34803 -11.00632 -10.87221 -10.65544 -10.55714 -10.38572 -10.33565 -10.24534 -10.04149 -9.99752 -9.63920 -9.22669 -9.02793 -8.66361 -8.15503 -7.65025 -6.77445 -4.48222 0.58627 1.10038 1.44819 2.43706 2.72594 2.93922 2.97117 2.99103 3.40956 3.45245 3.61681 3.86269 3.89002 4.00245 4.62799 4.91288 4.95573 5.04837 5.16955 5.19019 5.24781 5.30676 5.41195 5.45457 5.52258 5.60462 5.66539 5.71205 5.81038 5.93163 6.01618 6.07171 6.10898 6.12804 6.22591 6.26411 6.34694 6.39687 6.47460 6.50519 6.51072 6.60625 6.70447 6.79682 6.88248 7.13553 7.18190 7.38025 7.76611 8.10503 8.55543 8.74678 8.98583 10.12626 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005491 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.128178 B = 5098.479801 C = 7348.403843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.320 4.320 8 H 0.132 0.868 9 N -0.240 5.240 10 N 0.008 4.992 11 C -0.623 4.623 12 C 0.630 3.370 13 O -0.526 6.526 14 N -0.600 5.600 15 C 0.120 3.880 16 C -0.136 4.136 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.122 4.122 20 C 0.089 3.911 21 S 2.544 3.456 22 O -0.936 6.936 23 O -0.950 6.950 24 C -0.707 4.707 25 C 0.009 3.991 26 C -0.188 4.188 27 C -0.047 4.047 28 C -0.158 4.158 29 C 0.205 3.795 30 H 0.280 0.720 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -1.898 5.436 5.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.453 4.453 8 H 0.149 0.851 9 N -0.025 5.025 10 N 0.180 4.820 11 C -0.882 4.882 12 C 0.414 3.586 13 O -0.400 6.400 14 N -0.334 5.334 15 C -0.004 4.004 16 C -0.175 4.175 17 C -0.148 4.148 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.034 4.034 21 S 2.724 3.276 22 O -0.931 6.931 23 O -0.945 6.945 24 C -0.803 4.803 25 C -0.010 4.010 26 C -0.209 4.209 27 C -0.066 4.066 28 C -0.181 4.181 29 C 0.096 3.904 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.980 -1.551 4.959 5.288 hybrid contribution 0.978 0.627 -0.147 1.170 sum -0.003 -0.924 4.812 4.900 Atomic orbital electron populations 1.69928 1.06023 1.28705 1.35514 1.25589 0.95769 1.00252 0.95684 0.85678 0.79579 0.79870 0.78714 1.18550 1.19733 1.19770 1.20214 0.92528 0.80144 1.52410 0.85093 1.45022 1.00571 1.04926 1.51975 1.75389 0.86614 1.17386 1.02637 1.33510 1.02583 1.18872 1.33250 1.16262 0.82774 0.75214 0.84306 1.90714 1.77290 1.49528 1.22448 1.47522 1.08477 1.71208 1.06211 1.21397 0.81291 0.95476 1.02201 1.21211 1.02018 0.96198 0.98036 1.20409 0.97329 1.00282 0.96797 1.21126 0.98137 0.96325 1.00526 1.21665 1.01083 0.95193 0.98095 1.22537 1.01496 0.98557 0.80790 1.03165 0.74230 0.74742 0.75490 1.93558 1.85118 1.85466 1.28996 1.93541 1.77384 1.51616 1.71987 1.29420 1.24099 1.01198 1.25548 1.20243 0.94150 0.94496 0.92149 1.20941 0.94410 0.98724 1.06820 1.21095 0.99336 0.92107 0.94094 1.21044 0.91757 0.99836 1.05489 1.17996 0.92543 0.86490 0.93403 0.90785 0.89787 0.90845 0.90978 0.91476 0.92829 0.92950 0.92456 0.89802 0.92086 0.90754 0.91593 0.87520 0.85516 0.85649 0.85556 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.86 11.14 55.51 0.62 -18.24 16 2 C 0.04 0.97 5.47 -17.46 -0.10 0.88 16 3 Si 0.94 17.15 29.56 -169.99 -5.02 12.12 16 4 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 7 C -0.32 -7.29 9.29 -15.19 -0.14 -7.43 16 8 H 0.13 2.60 5.61 -52.49 -0.29 2.31 16 9 N -0.24 -5.73 3.68 -9.68 -0.04 -5.77 16 10 N 0.01 0.21 8.09 32.68 0.26 0.48 16 11 C -0.62 -15.12 5.30 -15.00 -0.08 -15.20 16 12 C 0.63 14.93 7.28 -13.00 -0.09 14.84 16 13 O -0.53 -13.68 16.51 5.16 0.09 -13.59 16 14 N -0.60 -11.73 2.24 -174.20 -0.39 -12.12 16 15 C 0.12 1.93 5.43 -4.08 -0.02 1.91 16 16 C -0.14 -2.04 5.73 -28.60 -0.16 -2.21 16 17 C -0.11 -1.51 5.15 -29.81 -0.15 -1.66 16 18 C -0.12 -1.93 5.51 -28.02 -0.15 -2.08 16 19 C -0.12 -1.82 5.71 -27.30 -0.16 -1.97 16 20 C 0.09 1.61 4.67 -2.94 -0.01 1.60 16 21 S 2.54 56.43 5.07 -107.50 -0.55 55.89 16 22 O -0.94 -20.25 14.36 -57.12 -0.82 -21.07 16 23 O -0.95 -22.46 17.90 -57.12 -1.02 -23.48 16 24 C -0.71 -14.76 5.85 -39.46 -0.23 -14.99 16 25 C 0.01 0.16 9.75 -39.71 -0.39 -0.23 16 26 C -0.19 -2.76 10.06 -39.48 -0.40 -3.16 16 27 C -0.05 -0.68 10.02 -39.66 -0.40 -1.08 16 28 C -0.16 -2.81 9.13 -39.28 -0.36 -3.17 16 29 C 0.21 4.40 6.41 -83.98 -0.54 3.86 16 30 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.08 1.41 7.23 -51.93 -0.38 1.03 16 32 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.63 7.36 -51.92 -0.38 0.25 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.64 7.48 -51.93 -0.39 1.25 16 39 H 0.06 0.77 7.32 -51.93 -0.38 0.39 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 42 H 0.11 2.22 4.10 -51.93 -0.21 2.00 16 43 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 45 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.14 2.26 6.06 -52.48 -0.32 1.94 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -30.90 375.00 -10.30 -41.20 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.70 Total: 9.02 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -3.38 Total: -30.10 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.46 Total: -35.65 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -1.76 Total: -58.14 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.02 Total: 12.12 kcal Atomic # 16 Polarization: 56.43 SS G_CDS: -0.55 Total: 55.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.90 -10.30 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.964 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds