Wall clock time and date at job start Tue Mar 31 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38274 * 119.94536 * 2 1 4 4 C 1.38097 * 120.09734 * 179.97438 * 3 2 1 5 5 C 1.38901 * 119.98226 * 359.97438 * 4 3 2 6 6 N 1.40030 * 120.05801 * 179.97438 * 5 4 3 7 7 C 1.38325 * 114.65462 * 88.68266 * 6 5 4 8 8 N 1.32676 * 121.25733 * 0.02562 * 7 6 5 9 9 C 1.31838 * 121.65617 * 179.97438 * 8 7 6 10 10 C 1.38133 * 121.85993 * 0.02562 * 9 8 7 11 11 C 1.39424 * 118.75914 * 359.97438 * 10 9 8 12 12 C 1.36604 * 117.48283 * 0.02562 * 11 10 9 13 13 S 1.77340 * 122.99749 * 180.02562 * 12 11 10 14 14 O 1.42098 * 105.55030 * 65.31848 * 13 12 11 15 15 O 1.42098 * 105.44191 * 294.56966 * 13 12 11 16 16 N 1.68093 * 112.59728 * 179.97438 * 13 12 11 17 17 C 1.37149 * 122.65308 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99965 * 318.97393 * 17 16 13 19 19 C 1.38889 * 119.99711 * 138.70398 * 17 16 13 20 20 N 1.31467 * 120.00030 * 157.95697 * 19 17 16 21 21 Si 1.86802 * 120.00260 * 337.96181 * 19 17 16 22 22 H 1.48488 * 109.47508 * 92.64377 * 21 19 17 23 23 H 1.48503 * 109.47193 * 212.64926 * 21 19 17 24 24 H 1.48505 * 109.46854 * 332.64299 * 21 19 17 25 25 C 1.32320 * 114.65514 * 268.95729 * 6 5 4 26 26 O 1.21579 * 116.73727 * 0.03685 * 25 6 5 27 27 C 1.38811 * 119.88620 * 0.25746 * 5 4 3 28 28 C 1.38352 * 119.90530 * 359.50791 * 27 5 4 29 29 F 1.35095 * 119.99526 * 180.23622 * 28 27 5 30 30 H 1.08994 * 109.47046 * 90.00058 * 1 2 3 31 31 H 1.08998 * 109.46770 * 210.00007 * 1 2 3 32 32 H 1.09002 * 109.46959 * 329.99777 * 1 2 3 33 33 H 1.08006 * 119.94558 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00686 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.06732 * 179.97438 * 9 8 7 36 36 H 1.08003 * 120.61670 * 179.97438 * 10 9 8 37 37 H 1.07995 * 121.25781 * 179.97438 * 11 10 9 38 38 H 0.96998 * 120.00225 * 180.02562 * 20 19 17 39 39 H 1.07999 * 120.04862 * 179.72638 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5782 1.2018 0.0005 5 6 4.2755 0.0005 0.0016 6 7 5.6758 0.0024 0.0016 7 6 6.2528 0.0332 1.2584 8 7 5.5091 0.0579 2.3569 9 6 6.0507 0.0869 3.5586 10 6 7.4198 0.0935 3.7413 11 6 8.2465 0.0683 2.6188 12 6 7.6444 0.0388 1.3930 13 16 8.5538 0.0037 -0.1291 14 8 9.2411 -1.2400 -0.1336 15 8 9.2356 1.2488 -0.1913 16 7 7.5528 -0.0299 -1.4790 17 6 8.0397 -0.0604 -2.7608 18 1 8.8904 0.5481 -3.0298 19 6 7.4421 -0.8780 -3.7113 20 7 7.5901 -0.6151 -4.9909 21 14 6.4281 -2.3510 -3.1716 22 1 5.0014 -1.9553 -3.0586 23 1 6.5622 -3.4384 -4.1741 24 1 6.9147 -2.8307 -1.8531 25 6 6.2278 -0.0198 -1.2007 26 8 5.4692 -0.0383 -2.1506 27 6 3.5819 -1.2019 -0.0033 28 6 2.1983 -1.2001 0.0011 29 9 1.5215 -2.3693 0.0012 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6554 2.1325 -0.0004 34 1 4.1158 2.1385 0.0010 35 1 5.4055 0.1067 4.4245 36 1 7.8420 0.1178 4.7351 37 1 9.3222 0.0729 2.7149 38 1 7.1725 -1.1859 -5.6547 39 1 4.1214 -2.1374 -0.0069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065255479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:35 Heat of formation + Delta-G solvation = -20.811026 kcal Electronic energy + Delta-G solvation = -33527.099185 eV Core-core repulsion = 28864.923443 eV Total energy + Delta-G solvation = -4662.175742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.068 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.87534 -41.79006 -39.79830 -38.79224 -36.20300 -36.07726 -34.90178 -34.77066 -32.95942 -32.63038 -32.13340 -30.61848 -30.15865 -27.16188 -25.61189 -24.12435 -23.86698 -22.96424 -22.03864 -20.83353 -19.90205 -19.09403 -18.37932 -17.78847 -17.08839 -16.50378 -16.13614 -16.06748 -15.82849 -15.64495 -15.56826 -15.31173 -15.13142 -14.53329 -14.29261 -14.14130 -13.84667 -13.67547 -13.55567 -13.44570 -13.28372 -13.17409 -12.83696 -12.64198 -11.98655 -11.84379 -11.76681 -11.55313 -11.41298 -11.20322 -11.04335 -10.98831 -10.81472 -10.56335 -10.44503 -10.16410 -9.95669 -9.46377 -9.32893 -9.01930 -8.89485 -8.55365 -8.43547 -7.10018 -4.72570 0.58845 0.71795 1.05106 1.10650 1.22577 2.02805 2.83493 3.12830 3.18766 3.28940 3.39860 3.58399 3.63312 3.96047 4.07895 4.12946 4.32522 4.35926 4.63043 4.69476 4.71575 4.88315 4.98102 5.01962 5.19833 5.22945 5.34214 5.46426 5.49392 5.52917 5.60277 5.70644 5.78698 5.91651 5.98072 6.01776 6.23413 6.30493 6.36659 6.44939 6.79692 6.87520 7.19494 7.59908 7.80726 7.89353 8.32441 8.52035 9.86917 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.005779 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.915587 B = 4844.075098 C = 7050.538408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.084 4.084 4 C -0.094 4.094 5 C 0.180 3.820 6 N -0.507 5.507 7 C 0.432 3.568 8 N -0.510 5.510 9 C 0.168 3.832 10 C -0.219 4.219 11 C 0.058 3.942 12 C -0.720 4.720 13 S 2.457 3.543 14 O -0.978 6.978 15 O -0.953 6.953 16 N -0.741 5.741 17 C -0.203 4.203 18 H 0.139 0.861 19 C 0.093 3.907 20 N -0.774 5.774 21 Si 0.889 3.111 22 H -0.236 1.236 23 H -0.278 1.278 24 H -0.262 1.262 25 C 0.659 3.341 26 O -0.504 6.504 27 C -0.126 4.126 28 C 0.105 3.895 29 F -0.137 7.137 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.296 0.704 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 1.641 12.619 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.102 4.102 4 C -0.113 4.113 5 C 0.091 3.909 6 N -0.232 5.232 7 C 0.200 3.800 8 N -0.226 5.226 9 C 0.011 3.989 10 C -0.242 4.242 11 C 0.031 3.969 12 C -0.805 4.805 13 S 2.570 3.430 14 O -0.966 6.966 15 O -0.943 6.943 16 N -0.570 5.570 17 C -0.357 4.357 18 H 0.156 0.844 19 C -0.130 4.130 20 N -0.406 5.406 21 Si 0.714 3.286 22 H -0.161 1.161 23 H -0.205 1.205 24 H -0.186 1.186 25 C 0.361 3.639 26 O -0.376 6.376 27 C -0.146 4.146 28 C 0.085 3.915 29 F -0.116 7.116 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.107 0.893 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.684 1.581 12.051 16.182 hybrid contribution 0.399 -1.090 0.884 1.459 sum -10.284 0.491 12.934 16.532 Atomic orbital electron populations 1.20712 0.89999 1.03196 1.02875 1.19938 0.97022 0.91762 1.02716 1.20678 0.92972 0.97167 0.99401 1.21173 0.94328 0.97194 0.98608 1.16824 0.80399 0.93210 1.00477 1.41987 1.06680 1.72497 1.02062 1.17599 0.87100 0.89971 0.85332 1.67180 1.39691 1.18217 0.97507 1.22643 0.93280 0.89753 0.93215 1.22230 0.94978 1.07176 0.99791 1.20578 1.00357 0.86210 0.89745 1.31242 1.06178 1.20254 1.22783 1.14733 0.79601 0.75288 0.73393 1.93360 1.73123 1.44716 1.85380 1.93422 1.70804 1.44329 1.85759 1.51922 1.11448 1.73835 1.19769 1.19435 1.17420 1.21242 0.77643 0.84371 1.25732 0.95246 0.97586 0.94481 1.69680 1.35137 1.34928 1.00841 0.86557 0.82826 0.79079 0.80155 1.16061 1.20489 1.18594 1.15833 0.84959 0.81541 0.81531 1.90903 1.57706 1.51673 1.37277 1.21035 0.92734 0.98798 1.02057 1.17079 0.88945 0.81116 1.04394 1.91471 1.79931 1.46107 1.94048 0.90694 0.91253 0.90895 0.84373 0.84965 0.81797 0.83680 0.83673 0.89338 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.83 36.00 0.35 -0.70 16 2 C -0.11 -1.47 5.89 -104.51 -0.62 -2.08 16 3 C -0.08 -1.05 9.69 -39.62 -0.38 -1.43 16 4 C -0.09 -1.45 9.97 -39.39 -0.39 -1.84 16 5 C 0.18 3.31 2.53 -83.65 -0.21 3.10 16 6 N -0.51 -10.43 2.68 -64.90 -0.17 -10.61 16 7 C 0.43 8.23 7.31 -155.18 -1.13 7.10 16 8 N -0.51 -8.25 9.33 -12.37 -0.12 -8.36 16 9 C 0.17 2.08 11.11 -17.59 -0.20 1.89 16 10 C -0.22 -2.61 10.16 -39.18 -0.40 -3.00 16 11 C 0.06 0.90 10.02 -39.73 -0.40 0.50 16 12 C -0.72 -14.03 5.81 -39.58 -0.23 -14.26 16 13 S 2.46 57.88 5.36 -107.50 -0.58 57.30 16 14 O -0.98 -25.17 17.98 -57.32 -1.03 -26.20 16 15 O -0.95 -23.66 17.98 -57.32 -1.03 -24.70 16 16 N -0.74 -18.45 2.62 -15.77 -0.04 -18.49 16 17 C -0.20 -5.30 9.94 -14.93 -0.15 -5.45 16 18 H 0.14 3.58 8.06 -52.49 -0.42 3.16 16 19 C 0.09 2.41 4.82 -17.47 -0.08 2.33 16 20 N -0.77 -19.69 13.96 55.49 0.77 -18.91 16 21 Si 0.89 21.31 25.09 -169.99 -4.27 17.05 16 22 H -0.24 -5.70 6.26 56.52 0.35 -5.34 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.26 -6.44 7.11 56.52 0.40 -6.03 16 25 C 0.66 15.48 6.46 -88.52 -0.57 14.91 16 26 O -0.50 -12.50 11.10 5.30 0.06 -12.44 16 27 C -0.13 -2.22 9.94 -39.33 -0.39 -2.61 16 28 C 0.10 1.61 7.24 -39.44 -0.29 1.32 16 29 F -0.14 -2.06 16.47 2.25 0.04 -2.02 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.64 7.63 -51.93 -0.40 0.24 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.30 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -32.41 352.36 -9.52 -41.93 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.38 Total: 0.39 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -5.09 Total: -0.24 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.44 Total: -56.37 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -2.00 Total: -63.34 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.27 Total: 17.05 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.58 Total: 57.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.41 -9.52 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065255479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.118 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds