Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 119.92301 * 2 1 4 4 C 1.38100 * 120.07144 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.92806 * 0.02562 * 4 3 2 6 6 N 1.39676 * 120.07447 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99794 * 116.46959 * 6 5 4 8 8 C 1.50702 * 109.47120 * 274.99653 * 7 6 5 9 9 H 1.07993 * 119.99849 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99619 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00304 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99587 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47202 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46840 * 119.99994 * 12 10 8 15 15 H 1.48498 * 109.47309 * 240.00426 * 12 10 8 16 16 S 1.65595 * 119.99865 * 296.46766 * 6 5 4 17 17 O 1.42102 * 106.40137 * 159.48998 * 16 6 5 18 18 O 1.42105 * 106.40346 * 26.57198 * 16 6 5 19 19 C 1.76200 * 107.22028 * 273.02715 * 16 6 5 20 20 C 1.39840 * 126.06477 * 89.97437 * 19 16 6 21 21 C 1.37867 * 107.08357 * 180.02562 * 20 19 16 22 22 C 1.46677 * 126.23452 * 180.02562 * 21 20 19 23 23 N 1.34776 * 119.99794 * 3.97150 * 22 21 20 24 24 O 1.21689 * 120.00248 * 184.24237 * 22 21 20 25 25 N 1.37650 * 107.53475 * 0.26111 * 21 20 19 26 26 C 1.46503 * 125.67847 * 179.71114 * 25 21 20 27 27 C 1.35452 * 126.06844 * 270.00541 * 19 16 6 28 28 C 1.38910 * 119.84835 * 0.24740 * 5 4 3 29 29 C 1.38100 * 119.92500 * 359.50263 * 28 5 4 30 30 H 1.09007 * 109.47109 * 89.99749 * 1 2 3 31 31 H 1.08993 * 109.47311 * 209.99486 * 1 2 3 32 32 H 1.08996 * 109.47197 * 330.00029 * 1 2 3 33 33 H 1.08001 * 119.95873 * 359.95730 * 3 2 1 34 34 H 1.08005 * 120.03823 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47156 * 35.00077 * 7 6 5 36 36 H 1.09006 * 109.46924 * 154.99872 * 7 6 5 37 37 H 0.97002 * 119.99585 * 179.97438 * 11 10 8 38 38 H 1.08005 * 126.45525 * 0.02562 * 20 19 16 39 39 H 0.97000 * 120.00146 * 354.82589 * 23 22 21 40 40 H 0.96994 * 120.00220 * 174.81896 * 23 22 21 41 41 H 1.08998 * 109.46873 * 84.22867 * 26 25 21 42 42 H 1.09008 * 109.46855 * 204.22816 * 26 25 21 43 43 H 1.08996 * 109.46892 * 324.22568 * 26 25 21 44 44 H 1.07998 * 125.56193 * 0.02562 * 27 19 16 45 45 H 1.07998 * 120.03418 * 179.72815 * 28 5 4 46 46 H 1.08007 * 119.96531 * 180.24930 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6708 0.0001 0.0005 7 6 6.4033 -0.5654 1.1363 8 6 6.5472 0.4802 2.2120 9 1 6.1340 1.4670 2.0646 10 6 7.2055 0.1765 3.3848 11 7 7.7082 -1.0254 3.5645 12 14 7.3846 1.4727 4.7179 13 1 6.7371 2.7330 4.2731 14 1 6.7328 0.9948 5.9637 15 1 8.8256 1.7208 4.9769 16 16 6.4987 0.6393 -1.2833 17 8 7.8050 0.9373 -0.8100 18 8 5.6434 1.6117 -1.8683 19 6 6.6826 -0.6440 -2.4765 20 6 5.7906 -0.9390 -3.5123 21 6 6.3143 -2.0098 -4.2051 22 6 5.7163 -2.6615 -5.3752 23 7 4.5851 -2.1679 -5.9167 24 8 6.2388 -3.6507 -5.8540 25 7 7.4979 -2.3593 -3.5955 26 6 8.3804 -3.4539 -4.0072 27 6 7.7126 -1.5203 -2.5529 28 6 3.5779 -1.2020 -0.0052 29 6 2.1969 -1.1984 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 1.6549 2.1328 -0.0007 34 1 4.1161 2.1385 0.0010 35 1 5.8559 -1.4209 1.5320 36 1 7.3916 -0.8868 0.8075 37 1 8.1717 -1.2388 4.3895 38 1 4.8658 -0.4249 -3.7288 39 1 4.1253 -1.4285 -5.4893 40 1 4.2308 -2.5521 -6.7338 41 1 9.0408 -3.1085 -4.8026 42 1 8.9772 -3.7795 -3.1550 43 1 7.7798 -4.2879 -4.3700 44 1 8.5633 -1.5492 -1.8882 45 1 4.1161 -2.1383 -0.0097 46 1 1.6550 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065502310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = -34.151668 kcal Electronic energy + Delta-G solvation = -32984.277183 eV Core-core repulsion = 28580.816347 eV Total energy + Delta-G solvation = -4403.460837 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.124 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60163 -39.14119 -39.01493 -36.56029 -35.68127 -35.16185 -34.31150 -32.89795 -32.72230 -31.07184 -30.53935 -29.56640 -27.40869 -26.88505 -25.43276 -23.46194 -22.90014 -22.08295 -21.56650 -20.84935 -19.96963 -18.81628 -18.20648 -17.10918 -16.95289 -16.57847 -16.08779 -15.94905 -15.75410 -15.39339 -15.03832 -14.76404 -14.55867 -14.47930 -14.29170 -14.15929 -13.62958 -13.56153 -13.27188 -13.03463 -12.80193 -12.63168 -12.59640 -12.51343 -12.16510 -12.10312 -11.61026 -11.45696 -11.43550 -11.20868 -11.05186 -10.95637 -10.84422 -10.67581 -10.50129 -10.35079 -10.08007 -10.03868 -9.85853 -9.28356 -8.66054 -8.58149 -8.51004 -8.45143 -7.69222 -6.08217 -4.11451 0.93329 1.23561 1.77910 1.84694 2.01829 2.45336 3.09361 3.31556 3.37968 3.38913 3.44445 3.71416 4.14239 4.38324 4.45857 4.48704 4.64171 4.77109 4.98604 5.04282 5.14488 5.18723 5.25188 5.29328 5.33626 5.39364 5.39928 5.56978 5.69168 5.71994 5.84378 5.88011 6.00207 6.10921 6.28497 6.38789 6.50073 6.50685 6.59249 6.73905 6.89482 6.94638 7.00426 7.02568 7.17056 7.27544 7.31990 7.77877 7.90219 7.93008 8.15449 8.90306 9.53485 11.00586 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.007864 B = 0.003955 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.846082 B = 7077.245614 C = 9327.735308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.113 4.113 4 C -0.100 4.100 5 C 0.168 3.832 6 N -0.940 5.940 7 C 0.256 3.744 8 C -0.525 4.525 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.896 5.896 12 Si 0.896 3.104 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.282 1.282 16 S 2.708 3.292 17 O -0.943 6.943 18 O -0.967 6.967 19 C -0.748 4.748 20 C -0.043 4.043 21 C -0.071 4.071 22 C 0.600 3.400 23 N -0.842 5.842 24 O -0.554 6.554 25 N -0.403 5.403 26 C 0.062 3.938 27 C 0.147 3.853 28 C -0.115 4.115 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.157 0.843 39 H 0.406 0.594 40 H 0.409 0.591 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.192 0.808 45 H 0.123 0.877 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 -3.487 -15.220 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.121 4.121 5 C 0.073 3.927 6 N -0.772 5.772 7 C 0.136 3.864 8 C -0.564 4.564 9 H 0.081 0.919 10 C -0.138 4.138 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.208 1.208 16 S 2.798 3.202 17 O -0.933 6.933 18 O -0.957 6.957 19 C -0.839 4.839 20 C -0.069 4.069 21 C -0.183 4.183 22 C 0.387 3.613 23 N -0.406 5.406 24 O -0.434 6.434 25 N -0.074 5.074 26 C -0.079 4.079 27 C 0.004 3.996 28 C -0.136 4.136 29 C -0.135 4.135 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.236 0.764 40 H 0.240 0.760 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.209 0.791 45 H 0.141 0.859 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.516 -3.730 -15.536 17.657 hybrid contribution -0.125 0.063 0.579 0.595 sum -7.641 -3.668 -14.957 17.192 Atomic orbital electron populations 1.20719 0.91741 1.02345 1.01703 1.19815 0.95601 0.93285 1.01624 1.20815 0.93555 0.97294 1.01470 1.21431 0.94231 0.97883 0.98517 1.17291 0.82761 0.92900 0.99707 1.55419 1.10964 1.77925 1.32855 1.19266 0.90872 0.94703 0.81575 1.21460 1.35910 0.98581 1.00488 0.91914 1.24886 0.95067 0.95596 0.98261 1.69920 1.37425 1.19605 1.26574 0.86461 0.77952 0.81841 0.81360 1.19526 1.20985 1.20792 1.01546 0.73446 0.73337 0.71855 1.93597 1.37894 1.82265 1.79561 1.93511 1.67767 1.56121 1.78349 1.31466 1.05442 1.25572 1.21450 1.20955 0.98430 0.94424 0.93120 1.20037 0.92640 1.03587 1.02034 1.16864 0.80369 0.82484 0.81566 1.43444 1.27078 1.39606 1.30487 1.90823 1.63093 1.25786 1.63653 1.44164 1.16733 1.24232 1.22310 1.22395 0.94343 0.89066 1.02076 1.22009 0.98920 0.88729 0.89946 1.21256 0.94050 0.97685 1.00637 1.20770 0.93557 0.97195 1.02003 0.91723 0.91965 0.91881 0.86219 0.85387 0.94284 0.93780 0.92738 0.82537 0.76399 0.75964 0.90131 0.89000 0.87872 0.79126 0.85937 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.10 -1.39 5.88 -104.58 -0.62 -2.00 16 3 C -0.11 -1.68 9.69 -39.61 -0.38 -2.06 16 4 C -0.10 -1.79 8.73 -39.38 -0.34 -2.14 16 5 C 0.17 3.17 5.21 -83.79 -0.44 2.73 16 6 N -0.94 -19.34 2.81 -59.80 -0.17 -19.50 16 7 C 0.26 6.20 5.03 -5.19 -0.03 6.18 16 8 C -0.53 -14.39 9.36 -34.44 -0.32 -14.71 16 9 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 12 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 S 2.71 52.72 5.75 -107.50 -0.62 52.10 16 17 O -0.94 -21.34 16.72 -57.17 -0.96 -22.30 16 18 O -0.97 -19.26 15.66 -57.17 -0.90 -20.16 16 19 C -0.75 -11.94 6.17 -39.98 -0.25 -12.19 16 20 C -0.04 -0.59 10.15 -39.12 -0.40 -0.99 16 21 C -0.07 -0.95 6.89 -81.98 -0.56 -1.51 16 22 C 0.60 7.24 8.05 -12.85 -0.10 7.13 16 23 N -0.84 -6.55 8.86 30.26 0.27 -6.29 16 24 O -0.55 -8.03 15.62 5.20 0.08 -7.95 16 25 N -0.40 -5.25 3.16 -120.23 -0.38 -5.63 16 26 C 0.06 0.61 10.47 59.85 0.63 1.23 16 27 C 0.15 2.11 11.11 -16.91 -0.19 1.92 16 28 C -0.11 -1.90 9.53 -39.38 -0.38 -2.27 16 29 C -0.12 -1.64 9.69 -39.62 -0.38 -2.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.13 2.38 7.52 -52.48 -0.39 1.99 16 35 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 36 H 0.04 1.10 7.52 -51.93 -0.39 0.71 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.16 1.76 7.45 -52.48 -0.39 1.37 16 39 H 0.41 2.38 7.73 -40.82 -0.32 2.06 16 40 H 0.41 2.37 8.93 -40.82 -0.36 2.00 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.69 8.12 -51.92 -0.42 0.27 16 43 H 0.10 1.09 6.57 -51.93 -0.34 0.75 16 44 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 46 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -35.98 406.56 -10.27 -46.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.94 Total: 5.29 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.50 Total: -19.74 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.46 Total: -56.18 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -1.77 Total: -50.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 52.72 SS G_CDS: -0.62 Total: 52.10 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.98 -10.27 -46.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065502310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.100 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds