Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31583 * 122.22683 * 2 1 4 4 C 1.29971 * 117.13716 * 179.97438 * 3 2 1 5 5 N 1.38765 * 125.37162 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00417 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00134 * 0.02562 * 6 5 4 8 8 C 1.47786 * 120.00306 * 180.02562 * 6 5 4 9 9 C 1.39608 * 120.14793 * 180.02562 * 8 6 5 10 10 C 1.37957 * 119.84609 * 179.97438 * 9 8 6 11 11 C 1.38364 * 120.14740 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.84544 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46900 * 90.00453 * 12 11 10 14 14 C 1.46894 * 111.00448 * 66.04231 * 13 12 11 15 15 C 1.46901 * 110.99742 * 189.99720 * 13 12 11 16 16 C 1.38365 * 120.30186 * 0.25686 * 11 10 9 17 17 C 1.37951 * 120.14521 * 359.44540 * 16 11 10 18 18 S 1.76148 * 109.26696 * 0.24554 * 4 3 2 19 19 C 1.34668 * 122.23436 * 179.97438 * 2 1 3 20 20 S 1.76203 * 125.92491 * 0.02562 * 19 2 1 21 21 C 1.76206 * 99.99578 * 179.97438 * 20 19 2 22 22 H 1.07999 * 120.00171 * 0.02562 * 21 20 19 23 23 C 1.38428 * 119.99755 * 179.97438 * 21 20 19 24 24 N 1.31809 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46681 * 60.00847 * 25 23 21 27 27 H 1.48506 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47298 * 300.00433 * 25 23 21 29 29 H 1.08997 * 109.46924 * 90.02363 * 1 2 3 30 30 H 1.08998 * 109.46455 * 210.02254 * 1 2 3 31 31 H 1.09003 * 109.46957 * 330.02369 * 1 2 3 32 32 H 0.97005 * 119.99601 * 0.02562 * 5 4 3 33 33 H 1.07989 * 120.07772 * 359.95440 * 9 8 6 34 34 H 1.07993 * 119.92109 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46646 * 209.99561 * 12 11 10 36 36 H 1.09000 * 109.47248 * 330.00279 * 12 11 10 37 37 H 1.09004 * 109.47172 * 59.99705 * 14 13 12 38 38 H 1.09000 * 109.47430 * 180.02562 * 14 13 12 39 39 H 1.09004 * 109.47117 * 299.99992 * 14 13 12 40 40 H 1.09003 * 109.47121 * 60.00223 * 15 13 12 41 41 H 1.09002 * 109.47115 * 179.97438 * 15 13 12 42 42 H 1.08992 * 109.47435 * 299.99615 * 15 13 12 43 43 H 1.08000 * 119.92435 * 179.70012 * 16 11 10 44 44 H 1.07994 * 120.07308 * 180.27426 * 17 16 11 45 45 H 0.97008 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5033 0.9978 0.0005 5 7 4.4038 2.0536 0.0001 6 6 5.7291 1.8090 0.0012 7 8 6.1358 0.6633 0.0022 8 6 6.6881 2.9334 0.0014 9 6 8.0617 2.6835 0.0020 10 6 8.9514 3.7379 0.0016 11 6 8.4851 5.0406 0.0011 12 6 9.4630 6.1872 0.0012 13 7 9.7812 6.5595 -1.3837 14 6 8.6012 7.1066 -2.0663 15 6 10.9026 7.5074 -1.4296 16 6 7.1251 5.2953 0.0063 17 6 6.2245 4.2503 0.0006 18 16 3.9348 -0.7100 -0.0060 19 6 2.2254 -1.1391 0.0005 20 16 1.5698 -2.7747 0.0006 21 6 3.0668 -3.7042 0.0006 22 1 4.0189 -3.1944 0.0009 23 6 3.0224 -5.0877 0.0012 24 7 1.8603 -5.7098 0.0013 25 14 4.6094 -6.0732 0.0004 26 1 5.3999 -5.7392 1.2124 27 1 4.2913 -7.5238 0.0006 28 1 5.3983 -5.7400 -1.2126 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.0793 2.9678 -0.0003 33 1 8.4269 1.6673 0.0031 34 1 10.0141 3.5459 0.0017 35 1 9.0213 7.0413 0.5146 36 1 10.3758 5.8863 0.5154 37 1 8.2541 7.9940 -1.5368 38 1 8.8646 7.3736 -3.0898 39 1 7.8090 6.3580 -2.0789 40 1 11.7837 7.0499 -0.9794 41 1 11.1176 7.7659 -2.4665 42 1 10.6390 8.4092 -0.8772 43 1 6.7678 6.3145 0.0108 44 1 5.1633 4.4505 0.0002 45 1 1.8292 -6.6794 0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069444174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = 37.108190 kcal Electronic energy + Delta-G solvation = -27749.649869 eV Core-core repulsion = 23792.031963 eV Total energy + Delta-G solvation = -3957.617906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66557 -39.36749 -38.47460 -37.26508 -34.85834 -32.80780 -32.38276 -31.36702 -30.40547 -28.06137 -27.72769 -27.04650 -25.75287 -24.48372 -23.30785 -22.54784 -21.74451 -20.83500 -19.85846 -18.41723 -17.64691 -17.14797 -16.30699 -16.08863 -15.97984 -15.70326 -15.45086 -15.43358 -15.08819 -14.77727 -14.68095 -14.09975 -13.99264 -13.91404 -13.52965 -13.17757 -12.90416 -12.85383 -12.67201 -12.57964 -12.21396 -12.12586 -11.99116 -11.87701 -11.69691 -11.38666 -11.35939 -11.23289 -11.05521 -10.81520 -10.57379 -10.26504 -9.91430 -9.51503 -9.31519 -9.25203 -9.06820 -8.83173 -8.73168 -8.64908 -7.78121 -6.58477 -6.48687 -4.26150 0.43730 1.04246 1.47500 1.89405 2.55052 2.57437 2.87622 3.09728 3.14041 3.16700 3.34293 3.36685 3.64098 3.78146 3.99664 4.22680 4.35462 4.48452 4.58517 4.69018 4.80507 4.84099 4.85130 4.96653 5.01179 5.04977 5.10385 5.18326 5.21596 5.28113 5.38346 5.45739 5.50729 5.64236 5.90143 5.98929 6.02100 6.14716 6.15884 6.24428 6.43792 6.46347 6.48783 6.50066 6.54379 6.96991 7.18774 7.34495 7.96010 8.05552 8.52340 8.89907 10.47123 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.001909 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.080609 B =14664.294798 C =16305.272940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.475 5.475 4 C 0.186 3.814 5 N -0.610 5.610 6 C 0.549 3.451 7 O -0.501 6.501 8 C -0.123 4.123 9 C -0.054 4.054 10 C -0.105 4.105 11 C -0.055 4.055 12 C 0.089 3.911 13 N -0.542 5.542 14 C 0.018 3.982 15 C 0.024 3.976 16 C -0.121 4.121 17 C -0.085 4.085 18 S 0.203 5.797 19 C -0.251 4.251 20 S 0.151 5.849 21 C -0.557 4.557 22 H 0.088 0.912 23 C 0.082 3.918 24 N -0.863 5.863 25 Si 0.925 3.075 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.267 1.267 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 25.083 -0.532 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 N -0.196 5.196 4 C -0.184 4.184 5 N -0.259 5.259 6 C 0.336 3.664 7 O -0.377 6.377 8 C -0.127 4.127 9 C -0.073 4.073 10 C -0.123 4.123 11 C -0.056 4.056 12 C -0.038 4.038 13 N -0.266 5.266 14 C -0.130 4.130 15 C -0.124 4.124 16 C -0.139 4.139 17 C -0.104 4.104 18 S 0.447 5.553 19 C -0.488 4.488 20 S 0.402 5.598 21 C -0.705 4.705 22 H 0.106 0.894 23 C -0.129 4.129 24 N -0.496 5.496 25 Si 0.749 3.251 26 H -0.192 1.192 27 H -0.204 1.204 28 H -0.192 1.192 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.840 23.033 -0.792 26.382 hybrid contribution 0.836 1.215 0.389 1.525 sum 13.676 24.248 -0.404 27.842 Atomic orbital electron populations 1.20117 0.88032 1.02108 1.01791 1.19032 0.96692 0.84573 1.12053 1.65811 1.02768 1.32431 1.18593 1.23702 0.89854 0.92838 1.12038 1.42228 1.04345 1.08139 1.71153 1.18391 0.81226 0.89479 0.77276 1.90781 1.77090 1.21785 1.48008 1.19665 0.93872 0.92281 1.06836 1.21325 0.91167 1.00477 0.94332 1.21000 1.00076 0.91358 0.99908 1.19926 0.93742 0.94636 0.97284 1.21137 0.98056 0.95016 0.89590 1.61978 1.07354 1.42247 1.14974 1.22509 0.93135 0.98470 0.98906 1.22406 0.93871 0.93869 1.02277 1.20949 0.92457 0.99020 1.01499 1.21290 0.99919 0.91572 0.97591 1.85845 1.01684 0.95337 1.72430 1.28788 1.01340 1.06752 1.11952 1.83058 1.10987 0.84367 1.81438 1.23227 0.93586 0.94044 1.59682 0.89371 1.25025 0.98277 0.96660 0.92918 1.70006 1.24412 1.10375 1.44784 0.86084 0.81198 0.78063 0.79734 1.19197 1.20391 1.19190 0.91872 0.91037 0.91943 0.74888 0.84144 0.85028 0.93546 0.89493 0.95532 0.91254 0.90677 0.91161 0.91092 0.95559 0.85585 0.85405 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.41 6.73 -83.96 -0.57 -0.16 16 3 N -0.47 -9.62 10.55 -9.81 -0.10 -9.72 16 4 C 0.19 3.65 8.39 -87.30 -0.73 2.92 16 5 N -0.61 -9.28 5.34 -12.67 -0.07 -9.35 16 6 C 0.55 8.39 7.73 -12.36 -0.10 8.29 16 7 O -0.50 -9.47 13.86 5.30 0.07 -9.40 16 8 C -0.12 -1.42 5.87 -104.97 -0.62 -2.03 16 9 C -0.05 -0.58 9.60 -39.17 -0.38 -0.95 16 10 C -0.10 -0.90 9.68 -39.64 -0.38 -1.28 16 11 C -0.06 -0.42 4.88 -104.53 -0.51 -0.93 16 12 C 0.09 0.54 5.11 -4.97 -0.03 0.51 16 13 N -0.54 -3.59 5.01 -252.72 -1.27 -4.86 16 14 C 0.02 0.11 9.14 60.06 0.55 0.66 16 15 C 0.02 0.12 9.57 60.07 0.57 0.69 16 16 C -0.12 -0.89 7.96 -39.64 -0.32 -1.21 16 17 C -0.08 -0.74 9.54 -39.17 -0.37 -1.11 16 18 S 0.20 4.55 18.34 -107.50 -1.97 2.58 16 19 C -0.25 -5.87 6.67 29.47 0.20 -5.67 16 20 S 0.15 3.82 20.74 -107.50 -2.23 1.59 16 21 C -0.56 -15.28 9.26 30.80 0.29 -14.99 16 22 H 0.09 2.40 5.97 -52.49 -0.31 2.09 16 23 C 0.08 2.21 5.49 -17.49 -0.10 2.12 16 24 N -0.86 -23.86 13.22 55.47 0.73 -23.13 16 25 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.26 7.37 -51.93 -0.38 0.87 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.41 4.80 6.85 -40.82 -0.28 4.52 16 33 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.05 0.25 8.06 -51.93 -0.42 -0.17 16 36 H 0.09 0.45 8.00 -51.93 -0.42 0.04 16 37 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 38 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.51 6.18 -51.93 -0.32 0.19 16 40 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.13 0.67 8.04 -52.49 -0.42 0.25 16 44 H 0.13 0.86 6.40 -52.49 -0.34 0.52 16 45 H 0.28 7.14 8.32 -40.82 -0.34 6.80 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -32.27 401.44 -11.73 -44.00 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.80 Total: 0.26 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.12 Total: -13.86 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.70 Total: -47.05 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 8.37 SS G_CDS: -4.20 Total: 4.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.27 -11.73 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069444174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.107 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds