Wall clock time and date at job start Tue Mar 31 2020 05:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47112 * 2 1 4 4 C 1.50699 * 109.47473 * 120.00182 * 2 1 3 5 5 O 1.21275 * 120.00157 * 119.99825 * 4 2 1 6 6 N 1.34779 * 119.99717 * 300.27501 * 4 2 1 7 7 C 1.39243 * 119.99871 * 174.36331 * 6 4 2 8 8 C 1.39476 * 119.83313 * 326.71398 * 7 6 4 9 9 C 1.36383 * 120.16744 * 179.71619 * 8 7 6 10 10 C 1.40869 * 119.82523 * 0.57501 * 9 8 7 11 11 C 1.41150 * 120.16219 * 179.67680 * 10 9 8 12 12 H 1.07997 * 119.99926 * 156.04739 * 11 10 9 13 13 C 1.39909 * 119.99985 * 336.04465 * 11 10 9 14 14 N 1.30871 * 119.99903 * 340.64705 * 13 11 10 15 15 Si 1.86794 * 119.99765 * 160.64751 * 13 11 10 16 16 H 1.48506 * 109.47337 * 94.72923 * 15 13 11 17 17 H 1.48502 * 109.47160 * 214.72620 * 15 13 11 18 18 H 1.48504 * 109.47515 * 334.72859 * 15 13 11 19 19 C 1.40875 * 119.67372 * 359.69787 * 10 9 8 20 20 C 1.36376 * 119.82776 * 359.97438 * 19 10 9 21 21 N 1.46503 * 109.47049 * 240.00182 * 2 1 3 22 22 C 1.35008 * 126.03773 * 44.99660 * 21 2 1 23 23 C 1.35363 * 107.73449 * 179.97438 * 22 21 2 24 24 Br 1.89102 * 126.04551 * 179.97438 * 23 22 21 25 25 C 1.39907 * 107.91053 * 0.02562 * 23 22 21 26 26 N 1.30848 * 108.20931 * 359.75640 * 25 23 22 27 27 H 1.09006 * 109.46830 * 299.99782 * 1 2 3 28 28 H 1.08996 * 109.47186 * 59.99766 * 1 2 3 29 29 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47046 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46673 * 299.99750 * 3 2 1 32 32 H 1.08994 * 109.46762 * 60.00289 * 3 2 1 33 33 H 0.96996 * 120.00298 * 354.36260 * 6 4 2 34 34 H 1.07998 * 119.91492 * 359.97438 * 8 7 6 35 35 H 1.07994 * 120.08703 * 180.25545 * 9 8 7 36 36 H 0.97004 * 119.99615 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.08319 * 179.97438 * 19 10 9 38 38 H 1.07997 * 119.91706 * 179.97438 * 20 19 10 39 39 H 1.08005 * 126.13129 * 359.94495 * 22 21 2 40 40 H 1.07998 * 125.89764 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7022 -0.2532 2.4545 7 6 2.0669 -0.9740 3.5886 8 6 2.1153 -2.3671 3.5396 9 6 2.4772 -3.0797 4.6447 10 6 2.7909 -2.4056 5.8412 11 6 3.1597 -3.1364 6.9911 12 1 3.7554 -2.6679 7.7605 13 6 2.7535 -4.4675 7.1342 14 7 1.7484 -4.9241 6.4313 15 14 3.6458 -5.5930 8.3285 16 1 2.9309 -5.6002 9.6301 17 1 3.6826 -6.9711 7.7764 18 1 5.0332 -5.1027 8.5284 19 6 2.7342 -0.9987 5.8846 20 6 2.3771 -0.2995 4.7695 21 7 2.0183 -0.6906 -1.1962 22 6 1.5552 -0.5251 -2.4535 23 6 2.2674 -1.3407 -3.2659 24 35 2.0444 -1.5203 -5.1351 25 6 3.1968 -2.0282 -2.4779 26 7 3.0515 -1.6356 -1.2382 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.2106 0.5780 2.5455 34 1 1.8696 -2.8826 2.6229 35 1 2.5182 -4.1581 4.6040 36 1 1.4665 -5.8469 6.5308 37 1 2.9729 -0.4752 6.7985 38 1 2.3328 0.7791 4.8012 39 1 0.7589 0.1386 -2.7567 40 1 3.9136 -2.7541 -2.8323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069489063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:05 Heat of formation + Delta-G solvation = 83.030238 kcal Electronic energy + Delta-G solvation = -25468.944714 eV Core-core repulsion = 21718.260780 eV Total energy + Delta-G solvation = -3750.683934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.61278 -39.77345 -37.44899 -35.62988 -34.54911 -32.99650 -31.84311 -30.59454 -29.53768 -28.97953 -28.63997 -27.85678 -25.33769 -23.84670 -22.21137 -21.40589 -20.85404 -20.38278 -19.20052 -17.70983 -17.33618 -16.52282 -16.08546 -15.58490 -15.24013 -14.69019 -14.48646 -14.26599 -13.97263 -13.72066 -13.34108 -13.25666 -12.91723 -12.80608 -12.65105 -12.56818 -12.33596 -12.03121 -11.88832 -11.85770 -11.39807 -11.16923 -11.10063 -11.05841 -10.94823 -10.69560 -10.22562 -9.93860 -9.68677 -9.63342 -9.36990 -9.04397 -8.87691 -8.54404 -7.56499 -7.05880 -6.78848 -4.32701 1.47468 1.65749 2.39841 2.48609 2.57541 2.93141 3.05254 3.07298 3.11504 3.23686 3.38739 3.90575 4.17698 4.45097 4.49102 4.59792 4.68487 4.77960 5.04642 5.09876 5.21621 5.24578 5.40273 5.51217 5.61948 5.67920 5.73367 6.09102 6.31967 6.34138 6.64442 6.73916 6.92854 6.99883 7.10317 7.24001 7.54054 7.57438 7.61857 7.90548 8.01651 8.14008 8.25534 8.57952 8.67280 8.84441 8.95748 10.12666 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.001989 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.714553 B =14074.679446 C =15179.358216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 C -0.158 4.158 4 C 0.494 3.506 5 O -0.475 6.475 6 N -0.646 5.646 7 C -0.008 4.008 8 C -0.083 4.083 9 C -0.156 4.156 10 C 0.107 3.893 11 C -0.457 4.457 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.786 5.786 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.217 4.217 20 C -0.101 4.101 21 N -0.348 5.348 22 C 0.088 3.912 23 C -0.240 4.240 24 Br -0.031 7.031 25 C 0.054 3.946 26 N -0.217 5.217 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.391 0.609 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.282 0.718 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.178 0.822 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 10.754 -19.596 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.080 3.920 3 C -0.216 4.216 4 C 0.277 3.723 5 O -0.346 6.346 6 N -0.291 5.291 7 C -0.100 4.100 8 C -0.103 4.103 9 C -0.176 4.176 10 C 0.104 3.896 11 C -0.486 4.486 12 H 0.097 0.903 13 C -0.143 4.143 14 N -0.411 5.411 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.200 1.200 18 H -0.183 1.183 19 C -0.237 4.237 20 C -0.122 4.122 21 N -0.130 5.130 22 C -0.061 4.061 23 C -0.332 4.332 24 Br 0.052 6.948 25 C -0.135 4.135 26 N -0.036 5.036 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.225 0.775 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.195 0.805 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.786 9.672 -19.042 21.691 hybrid contribution -0.284 0.016 0.044 0.288 sum -4.070 9.689 -18.998 21.710 Atomic orbital electron populations 1.22265 0.90528 1.04626 1.04349 1.20762 0.95601 0.92528 0.83085 1.22269 1.03342 0.92041 1.03982 1.19759 0.82423 0.86381 0.83777 1.90861 1.34179 1.24505 1.85046 1.42845 1.56152 1.25641 1.04423 1.17069 1.16150 0.90756 0.86004 1.20379 1.00268 0.91678 0.97970 1.20958 1.05359 0.99806 0.91511 1.17664 0.88355 0.90999 0.92597 1.19558 1.29076 0.95661 1.04262 0.90300 1.25947 0.93440 0.98785 0.96154 1.69852 1.19316 1.16897 1.35055 0.86321 0.81072 0.79256 0.80245 1.19546 1.19953 1.18336 1.20516 1.11758 0.94476 0.96950 1.19997 1.02156 0.96835 0.93176 1.48554 1.27251 1.32068 1.05097 1.22198 0.99687 1.00063 0.84192 1.21734 1.08594 1.10825 0.91997 1.96573 1.97502 1.97950 1.02806 1.24094 0.99105 1.00337 0.90001 1.78280 1.03890 1.03657 1.17768 0.89139 0.90569 0.90631 0.90773 0.90715 0.89577 0.77502 0.88222 0.86327 0.90743 0.88603 0.89213 0.80451 0.79523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.19 37.16 0.30 -1.08 16 2 C 0.17 2.00 1.08 -132.97 -0.14 1.85 16 3 C -0.16 -1.40 8.62 37.16 0.32 -1.08 16 4 C 0.49 8.42 6.25 -10.98 -0.07 8.35 16 5 O -0.48 -10.47 12.00 5.56 0.07 -10.40 16 6 N -0.65 -10.67 5.09 -9.74 -0.05 -10.72 16 7 C -0.01 -0.17 6.29 -83.57 -0.53 -0.70 16 8 C -0.08 -2.05 8.57 -39.79 -0.34 -2.39 16 9 C -0.16 -4.18 8.65 -39.26 -0.34 -4.52 16 10 C 0.11 2.83 5.58 -106.80 -0.60 2.24 16 11 C -0.46 -12.02 9.03 -37.85 -0.34 -12.36 16 12 H 0.08 1.98 7.92 -52.49 -0.42 1.57 16 13 C 0.08 1.89 5.10 -17.34 -0.09 1.80 16 14 N -0.79 -20.33 11.01 55.55 0.61 -19.72 16 15 Si 0.91 18.62 29.60 -169.99 -5.03 13.59 16 16 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 C -0.22 -5.17 9.74 -39.26 -0.38 -5.56 16 20 C -0.10 -2.16 9.89 -39.79 -0.39 -2.56 16 21 N -0.35 -4.69 3.42 -49.70 -0.17 -4.86 16 22 C 0.09 0.95 10.57 -17.18 -0.18 0.77 16 23 C -0.24 -2.82 6.53 -39.98 -0.26 -3.08 16 24 Br -0.03 -0.30 34.08 -68.01 -2.32 -2.62 16 25 C 0.05 0.74 12.01 -17.35 -0.21 0.53 16 26 N -0.22 -3.65 9.92 30.63 0.30 -3.34 16 27 H 0.09 0.63 7.68 -51.93 -0.40 0.23 16 28 H 0.08 0.44 7.37 -51.93 -0.38 0.06 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.58 7.46 -51.93 -0.39 0.19 16 33 H 0.39 4.79 7.67 -40.82 -0.31 4.48 16 34 H 0.10 2.51 6.39 -52.49 -0.34 2.17 16 35 H 0.12 3.31 6.17 -52.49 -0.32 2.98 16 36 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.18 1.25 7.56 -52.48 -0.40 0.86 16 40 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.27 357.65 -9.07 -41.34 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.62 Total: 9.13 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -3.25 Total: -17.78 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.70 Total: -38.65 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.32 Total: -2.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.27 -9.07 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069489063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.371 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds