Wall clock time and date at job start Tue Mar 31 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48494 * 109.47121 * 269.99772 * 3 2 1 5 5 H 1.48504 * 109.47062 * 30.00054 * 3 2 1 6 6 H 1.48504 * 109.47119 * 149.99196 * 3 2 1 7 7 C 1.37874 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99874 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99262 * 85.00466 * 10 9 7 12 12 C 1.50697 * 109.47292 * 78.25974 * 11 10 9 13 13 C 1.38226 * 119.61958 * 93.36695 * 12 11 10 14 14 C 1.38628 * 119.16280 * 179.74569 * 13 12 11 15 15 C 1.38679 * 118.41456 * 0.47204 * 14 13 12 16 16 C 1.38175 * 119.16845 * 359.50355 * 15 14 13 17 17 N 1.31847 * 119.61684 * 273.34138 * 12 11 10 18 18 S 1.65594 * 120.00147 * 264.99950 * 10 9 7 19 19 O 1.42091 * 106.40289 * 29.76684 * 18 10 9 20 20 O 1.42105 * 106.40080 * 162.68869 * 18 10 9 21 21 C 1.76205 * 107.22012 * 276.22204 * 18 10 9 22 22 C 1.38258 * 119.99469 * 11.82312 * 21 18 10 23 23 C 1.38213 * 119.99656 * 179.78517 * 22 21 18 24 24 C 1.38258 * 120.00022 * 0.46469 * 23 22 21 25 25 C 1.38213 * 119.99695 * 359.76575 * 24 23 22 26 26 C 1.38207 * 120.00193 * 192.09335 * 21 18 10 27 27 N 1.48020 * 119.99919 * 359.97438 * 26 21 18 28 28 O 1.21803 * 120.00121 * 172.99765 * 27 26 21 29 29 O 1.21804 * 120.00159 * 353.00618 * 27 26 21 30 30 H 0.96996 * 119.99898 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47150 * 59.99981 * 9 7 2 32 32 H 1.08998 * 109.47304 * 299.99861 * 9 7 2 33 33 H 1.09004 * 109.47155 * 318.25272 * 11 10 9 34 34 H 1.09010 * 109.46784 * 198.25638 * 11 10 9 35 35 H 1.08001 * 120.41945 * 359.94970 * 13 12 11 36 36 H 1.07995 * 120.79532 * 180.23190 * 14 13 12 37 37 H 1.08007 * 120.41454 * 179.78706 * 15 14 13 38 38 H 1.07991 * 119.62248 * 180.25629 * 16 15 14 39 39 H 1.07999 * 120.00363 * 0.02562 * 22 21 18 40 40 H 1.07999 * 120.00732 * 180.25302 * 23 22 21 41 41 H 1.07994 * 120.00216 * 179.79211 * 24 23 22 42 42 H 1.08001 * 119.99917 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7629 -4.0975 1.2646 12 6 1.7485 -4.9658 1.9631 13 6 1.7713 -6.3342 1.7692 14 6 0.8371 -7.1245 2.4206 15 6 -0.0957 -6.5050 3.2387 16 6 -0.0568 -5.1315 3.3846 17 7 0.8497 -4.4115 2.7526 18 16 2.6461 -4.3233 -1.4281 19 8 2.5608 -3.3120 -2.4226 20 8 3.8361 -5.0527 -1.1613 21 6 1.4101 -5.5153 -1.8231 22 6 0.2169 -5.5313 -1.1248 23 6 -0.7544 -6.4635 -1.4376 24 6 -0.5290 -7.3861 -2.4424 25 6 0.6657 -7.3731 -3.1372 26 6 1.6355 -6.4379 -2.8272 27 7 2.9151 -6.4241 -3.5712 28 8 3.1671 -7.3121 -4.3659 29 8 3.7162 -5.5249 -3.3886 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 3.0137 -3.2484 1.9003 34 1 3.6626 -4.6795 1.0639 35 1 2.5098 -6.7824 1.1209 36 1 0.8332 -8.1967 2.2910 37 1 -0.8404 -7.0893 3.7589 38 1 -0.7771 -4.6419 4.0231 39 1 0.0423 -4.8130 -0.3375 40 1 -1.6881 -6.4735 -0.8949 41 1 -1.2866 -8.1166 -2.6846 42 1 0.8416 -8.0935 -3.9224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069622965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:07 Heat of formation + Delta-G solvation = 12.287450 kcal Electronic energy + Delta-G solvation = -33870.049061 eV Core-core repulsion = 29332.768881 eV Total energy + Delta-G solvation = -4537.280180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.092 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.36605 -40.18572 -39.55027 -36.85323 -36.63920 -36.02565 -35.22157 -32.78068 -32.44608 -32.35426 -31.87040 -31.28786 -27.69263 -26.80757 -25.62814 -23.79870 -23.52873 -22.84651 -22.70391 -21.60431 -19.96435 -18.82919 -18.43320 -17.70313 -17.54624 -17.11492 -16.79504 -16.33571 -16.08849 -15.70316 -15.66211 -15.40293 -15.40212 -14.77140 -14.54965 -14.03074 -13.67860 -13.51005 -13.22084 -13.14415 -13.05608 -12.48766 -12.36959 -12.28129 -11.86305 -11.73998 -11.61481 -11.53912 -11.32712 -11.22477 -11.18289 -10.97078 -10.79517 -10.76703 -10.53792 -10.08450 -10.04613 -9.93669 -9.87490 -9.81099 -9.32854 -9.04783 -8.43973 -8.29018 -6.06423 -4.09106 -0.50348 0.39520 0.64148 1.08133 1.14391 1.17431 1.28419 2.84371 3.29054 3.36021 3.41762 3.46067 3.85801 3.94384 4.11450 4.30960 4.37606 4.45128 4.46718 4.61487 4.71759 4.74558 4.81969 5.01053 5.06572 5.09770 5.12603 5.23783 5.29839 5.40583 5.48027 5.54526 5.63618 5.71581 5.91350 5.99310 6.07040 6.11677 6.24566 6.40070 6.68479 7.07009 7.22555 7.45250 7.48843 7.90916 8.11926 8.16834 8.92108 9.55756 11.02813 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.007854 B = 0.005049 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.004303 B = 5544.239459 C = 7601.069089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.974 5.974 11 C 0.162 3.838 12 C 0.118 3.882 13 C -0.174 4.174 14 C -0.078 4.078 15 C -0.180 4.180 16 C 0.101 3.899 17 N -0.452 5.452 18 S 2.683 3.317 19 O -0.912 6.912 20 O -0.949 6.949 21 C -0.617 4.617 22 C -0.022 4.022 23 C -0.083 4.083 24 C -0.078 4.078 25 C -0.070 4.070 26 C 0.039 3.961 27 N 0.015 4.985 28 O -0.132 6.132 29 O -0.148 6.148 30 H 0.263 0.737 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 -19.048 3.006 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.814 5.814 11 C 0.035 3.965 12 C -0.022 4.022 13 C -0.195 4.195 14 C -0.104 4.104 15 C -0.200 4.200 16 C -0.057 4.057 17 N -0.161 5.161 18 S 2.764 3.236 19 O -0.902 6.902 20 O -0.938 6.938 21 C -0.696 4.696 22 C -0.041 4.041 23 C -0.102 4.102 24 C -0.097 4.097 25 C -0.090 4.090 26 C -0.044 4.044 27 N 0.535 4.465 28 O -0.353 6.353 29 O -0.359 6.359 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.293 -17.834 2.958 18.837 hybrid contribution -0.204 -0.509 -0.222 0.592 sum -5.497 -18.344 2.736 19.344 Atomic orbital electron populations 1.69908 1.06003 1.27097 1.50547 1.24887 0.94885 0.99238 0.94802 0.86505 0.79840 0.82843 0.78347 1.20418 1.21232 1.19637 1.21389 0.93747 0.90185 1.51012 0.91776 1.19323 0.87087 0.82086 0.98811 1.57742 1.60277 1.44476 1.18920 1.20251 0.92218 0.98350 0.85642 1.22004 0.95002 0.91672 0.93557 1.22128 1.00687 0.94937 1.01716 1.21501 0.93854 1.00110 0.94931 1.22130 1.00443 0.96593 1.00822 1.22892 0.95772 0.90832 0.96201 1.67705 1.02393 1.40166 1.05788 1.03091 0.73331 0.73412 0.73746 1.93648 1.85191 1.54242 1.57106 1.93544 1.41201 1.73839 1.85246 1.31759 1.18369 1.16273 1.03159 1.21208 0.89646 0.96864 0.96358 1.21772 0.99472 0.93161 0.95798 1.21442 0.95831 0.98336 0.94089 1.21148 0.91883 0.96269 0.99652 1.20491 0.86067 1.00911 0.96961 1.43776 1.02192 1.00333 1.00194 1.94483 1.81591 1.30017 1.29246 1.94606 1.43147 1.28851 1.69324 0.92732 0.94999 0.92666 0.87025 0.87915 0.85059 0.85265 0.85124 0.82764 0.82431 0.83258 0.82914 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.33 9.38 -34.44 -0.32 -14.66 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.25 5.93 4.10 -5.19 -0.02 5.91 16 10 N -0.97 -19.62 1.95 -116.94 -0.23 -19.85 16 11 C 0.16 2.77 6.03 -5.19 -0.03 2.74 16 12 C 0.12 1.76 6.07 -82.59 -0.50 1.26 16 13 C -0.17 -2.15 9.63 -39.44 -0.38 -2.53 16 14 C -0.08 -0.77 10.18 -39.27 -0.40 -1.17 16 15 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 16 C 0.10 1.20 11.18 -17.55 -0.20 1.00 16 17 N -0.45 -7.01 9.80 -9.48 -0.09 -7.10 16 18 S 2.68 55.99 3.91 -107.50 -0.42 55.57 16 19 O -0.91 -22.90 16.58 -64.87 -1.08 -23.97 16 20 O -0.95 -19.98 14.11 -67.05 -0.95 -20.93 16 21 C -0.62 -10.40 5.83 -39.59 -0.23 -10.63 16 22 C -0.02 -0.30 9.47 -39.58 -0.37 -0.68 16 23 C -0.08 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.08 -0.65 10.05 -39.58 -0.40 -1.05 16 25 C -0.07 -0.77 9.56 -39.59 -0.38 -1.14 16 26 C 0.04 0.61 6.82 -79.95 -0.54 0.07 16 27 N 0.01 0.27 4.45 33.96 0.15 0.42 16 28 O -0.13 -2.16 18.47 -29.46 -0.54 -2.71 16 29 O -0.15 -3.14 13.77 -39.48 -0.54 -3.69 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.03 0.81 7.78 -51.93 -0.40 0.41 16 32 H 0.06 1.34 7.55 -51.93 -0.39 0.95 16 33 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 34 H 0.10 1.58 6.66 -51.92 -0.35 1.23 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.16 2.32 6.32 -52.49 -0.33 1.98 16 40 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.16 1.32 7.63 -52.49 -0.40 0.92 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -35.61 379.65 -11.31 -46.92 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.38 Total: 0.24 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -4.67 Total: -22.48 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.57 Total: -51.37 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -3.11 Total: -51.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.42 Total: 55.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.61 -11.31 -46.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.212 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds