Wall clock time and date at job start Tue Mar 31 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00009 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47422 * 125.64800 * 359.96776 * 9 7 2 11 11 C 1.55136 * 104.72050 * 155.81448 * 10 9 7 12 12 C 1.55163 * 101.48333 * 37.29811 * 11 10 9 13 13 C 1.47020 * 125.64411 * 180.27542 * 9 7 2 14 14 H 1.09002 * 109.88176 * 61.61346 * 13 9 7 15 15 C 1.50690 * 109.88710 * 300.43943 * 13 9 7 16 16 N 1.31131 * 126.55530 * 136.45266 * 15 13 9 17 17 C 1.34490 * 105.62005 * 180.02562 * 16 15 13 18 18 C 1.50702 * 126.28788 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47190 * 89.99804 * 18 17 16 20 20 C 1.38240 * 119.98714 * 269.71830 * 19 18 17 21 21 C 1.38220 * 120.00689 * 179.76553 * 20 19 18 22 22 C 1.38329 * 119.98735 * 0.51850 * 21 20 19 23 23 Br 1.89101 * 120.00692 * 179.76488 * 22 21 20 24 24 C 1.38315 * 119.98122 * 359.73775 * 22 21 20 25 25 C 1.38222 * 119.99494 * 0.02562 * 24 22 21 26 26 N 1.29949 * 107.42550 * 359.97438 * 17 16 15 27 27 O 1.21303 * 110.24467 * 359.70820 * 26 17 16 28 28 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 29 29 H 1.08991 * 110.36917 * 274.74799 * 10 9 7 30 30 H 1.09000 * 110.36516 * 37.07108 * 10 9 7 31 31 H 1.08995 * 111.19563 * 279.19409 * 11 10 9 32 32 H 1.08999 * 110.93742 * 155.28819 * 11 10 9 33 33 H 1.08999 * 110.71556 * 205.96760 * 12 11 10 34 34 H 1.09000 * 110.86906 * 82.76241 * 12 11 10 35 35 H 1.09006 * 109.47054 * 209.99553 * 18 17 16 36 36 H 1.09000 * 109.47347 * 329.99552 * 18 17 16 37 37 H 1.08002 * 119.99844 * 0.02777 * 20 19 18 38 38 H 1.07994 * 120.00734 * 180.27795 * 21 20 19 39 39 H 1.08005 * 120.00792 * 180.02562 * 24 22 21 40 40 H 1.07994 * 120.00169 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1414 -2.5331 0.0140 11 6 -0.4019 -3.9356 -0.5959 12 6 0.7786 -4.7526 -0.0071 13 6 1.9320 -3.7274 0.0138 14 1 2.5288 -3.8593 0.9163 15 6 2.7974 -3.9047 -1.2070 16 7 3.9921 -4.4437 -1.2458 17 6 4.3733 -4.3870 -2.5343 18 6 5.6793 -4.8817 -3.1007 19 6 5.5323 -6.3224 -3.5179 20 6 5.8114 -7.3342 -2.6181 21 6 5.6721 -8.6556 -2.9988 22 6 5.2637 -8.9656 -4.2836 23 35 5.0793 -10.7733 -4.8070 24 6 4.9896 -7.9530 -5.1850 25 6 5.1245 -6.6317 -4.8020 26 7 3.4086 -3.8273 -3.2012 27 8 2.4914 -3.5481 -2.4581 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5225 -2.4837 1.0339 30 1 -0.6020 -1.7607 -0.6018 31 1 -0.3528 -3.9073 -1.6844 32 1 -1.3590 -4.3347 -0.2602 33 1 1.0238 -5.5958 -0.6527 34 1 0.5487 -5.0951 1.0019 35 1 5.9513 -4.2786 -3.9670 36 1 6.4581 -4.8007 -2.3424 37 1 6.1343 -7.0921 -1.6164 38 1 5.8858 -9.4459 -2.2946 39 1 4.6703 -8.1945 -6.1881 40 1 4.9102 -5.8410 -5.5056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069661861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:36 Heat of formation + Delta-G solvation = 119.575093 kcal Electronic energy + Delta-G solvation = -25543.316713 eV Core-core repulsion = 21794.217482 eV Total energy + Delta-G solvation = -3749.099231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -44.90992 -39.65306 -37.73422 -35.69555 -33.69315 -32.80839 -31.86951 -31.32744 -30.43311 -29.57847 -27.92271 -27.11497 -24.76736 -23.37491 -23.00675 -22.47174 -21.30566 -20.34535 -19.62987 -17.48716 -17.39321 -16.81772 -16.40231 -15.82144 -15.40885 -15.34848 -14.76472 -14.45078 -13.95721 -13.79535 -13.60560 -13.50273 -13.18600 -12.57963 -12.27328 -12.21097 -11.92059 -11.83853 -11.72910 -11.41986 -11.26661 -11.03706 -10.99846 -10.90722 -10.65286 -10.56780 -10.53302 -10.24944 -10.13138 -10.04462 -9.69178 -9.32259 -9.28368 -8.86319 -8.81969 -7.17566 -5.83843 -3.30056 0.75835 1.05255 1.34204 1.80492 2.72348 3.29420 3.31590 3.37118 3.38000 3.58210 4.08214 4.32458 4.39829 4.56344 4.58123 4.64073 5.00357 5.08053 5.24134 5.26674 5.31097 5.36966 5.42438 5.46868 5.56351 5.65986 5.74029 5.82919 5.92310 5.93240 6.13590 6.23038 6.30133 6.31626 6.43745 6.52710 6.54215 6.58782 6.65946 7.38308 7.45236 7.69697 8.16906 8.77936 9.00768 9.59420 10.18541 11.18229 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.002069 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.012728 B =13531.262883 C =14346.464270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.005 3.995 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.578 5.578 10 C 0.147 3.853 11 C -0.149 4.149 12 C -0.119 4.119 13 C 0.237 3.763 14 H 0.086 0.914 15 C 0.210 3.790 16 N -0.507 5.507 17 C 0.157 3.843 18 C 0.014 3.986 19 C -0.063 4.063 20 C -0.096 4.096 21 C -0.092 4.092 22 C -0.091 4.091 23 Br -0.057 7.057 24 C -0.092 4.092 25 C -0.101 4.101 26 N -0.397 5.397 27 O 0.092 5.908 28 H 0.257 0.743 29 H 0.024 0.976 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -19.831 -7.887 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.192 4.192 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.300 5.300 10 C 0.023 3.977 11 C -0.188 4.188 12 C -0.158 4.158 13 C 0.123 3.877 14 H 0.104 0.896 15 C -0.013 4.013 16 N -0.241 5.241 17 C -0.116 4.116 18 C -0.025 4.025 19 C -0.065 4.065 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.170 4.170 23 Br 0.029 6.971 24 C -0.112 4.112 25 C -0.120 4.120 26 N -0.107 5.107 27 O 0.035 5.965 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.586 -20.254 -8.762 24.060 hybrid contribution 0.515 1.307 0.195 1.418 sum 10.101 -18.947 -8.567 23.118 Atomic orbital electron populations 1.69783 1.04933 1.25491 1.55529 1.24804 0.95729 0.97898 1.00814 0.86138 0.78583 0.82578 0.78130 1.20960 1.21227 1.20836 1.18964 0.90449 0.82054 1.45368 0.90602 1.44726 1.02369 0.98506 1.84377 1.22137 0.83335 0.93243 0.98959 1.23097 0.96530 0.98695 1.00429 1.22574 0.95068 0.96481 1.01702 1.19912 0.91474 0.88990 0.87283 0.89618 1.31137 0.91845 0.88887 0.89417 1.71829 1.10980 1.23109 1.18215 1.25297 0.98609 1.00315 0.87392 1.18787 0.90294 0.91724 1.01651 1.19801 0.98088 0.94715 0.93877 1.21151 0.99046 0.91477 0.99786 1.21106 0.98516 0.97189 0.94318 1.21800 1.07489 0.90642 0.97090 1.96708 1.97015 1.11586 1.91811 1.21082 0.98996 0.91776 0.99304 1.21135 0.98576 0.96130 0.96124 1.74544 0.98807 1.18328 1.18972 1.85327 1.34807 1.59302 1.17057 0.93231 0.95754 0.87098 0.91816 0.91585 0.91892 0.90132 0.88255 0.87729 0.84527 0.84860 0.84930 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.14 10.09 55.49 0.56 -24.58 16 2 C 0.00 0.13 5.49 -17.43 -0.10 0.03 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.40 9.90 -15.06 -0.15 -6.55 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.58 -13.77 3.13 -163.74 -0.51 -14.29 16 10 C 0.15 3.30 5.90 -2.41 -0.01 3.28 16 11 C -0.15 -2.62 7.10 -24.46 -0.17 -2.80 16 12 C -0.12 -1.95 6.48 -24.89 -0.16 -2.11 16 13 C 0.24 4.68 3.68 -68.11 -0.25 4.43 16 14 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 15 C 0.21 4.24 6.86 -13.06 -0.09 4.15 16 16 N -0.51 -9.58 11.55 -9.87 -0.11 -9.70 16 17 C 0.16 2.73 7.45 -156.37 -1.17 1.56 16 18 C 0.01 0.18 5.97 -29.03 -0.17 0.00 16 19 C -0.06 -0.74 5.12 -104.62 -0.54 -1.27 16 20 C -0.10 -1.03 9.70 -39.59 -0.38 -1.42 16 21 C -0.09 -0.93 9.79 -39.55 -0.39 -1.32 16 22 C -0.09 -0.95 6.22 -39.52 -0.25 -1.20 16 23 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.82 16 24 C -0.09 -0.95 9.79 -39.56 -0.39 -1.33 16 25 C -0.10 -1.11 9.70 -39.59 -0.38 -1.49 16 26 N -0.40 -7.81 12.16 30.90 0.38 -7.43 16 27 O 0.09 1.97 11.31 18.10 0.20 2.18 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -29.32 360.90 -10.86 -40.18 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.90 Total: 0.52 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -4.60 Total: -6.01 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.31 Total: -55.99 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.20 Total: 2.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.32 -10.86 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069661861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.758 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds