Wall clock time and date at job start Tue Mar 31 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 C 1.50697 * 109.46974 * 120.00526 * 2 1 3 5 5 N 1.30847 * 126.05990 * 299.97036 * 4 2 1 6 6 N 1.28433 * 110.98141 * 180.02562 * 5 4 2 7 7 H 0.97002 * 125.19462 * 180.02562 * 6 5 4 8 8 C 1.36727 * 109.62157 * 359.97438 * 6 5 4 9 9 C 1.47002 * 126.90679 * 179.97438 * 8 6 5 10 10 O 1.21653 * 120.00181 * 180.02562 * 9 8 6 11 11 N 1.34780 * 119.99876 * 0.03387 * 9 8 6 12 12 C 1.39101 * 119.99815 * 174.86081 * 11 9 8 13 13 C 1.39517 * 119.83902 * 326.01284 * 12 11 9 14 14 C 1.36351 * 120.16335 * 179.69930 * 13 12 11 15 15 C 1.40882 * 119.83489 * 0.28097 * 14 13 12 16 16 C 1.41130 * 120.16300 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00372 * 207.84038 * 16 15 14 18 18 C 1.39912 * 120.00098 * 27.83567 * 16 15 14 19 19 N 1.30875 * 119.99879 * 11.34111 * 18 16 15 20 20 Si 1.86799 * 120.00359 * 191.33628 * 18 16 15 21 21 H 1.48493 * 109.46896 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46803 * 120.00539 * 20 18 16 23 23 H 1.48497 * 109.47268 * 240.00004 * 20 18 16 24 24 C 1.40880 * 119.67813 * 359.97438 * 15 14 13 25 25 C 1.36354 * 119.83016 * 0.02562 * 24 15 14 26 26 C 1.38562 * 106.19106 * 0.22569 * 8 6 5 27 27 Br 1.89094 * 127.33737 * 179.75377 * 26 8 6 28 28 H 1.09000 * 109.46864 * 59.99193 * 1 2 3 29 29 H 1.08999 * 109.47448 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46948 * 300.00221 * 1 2 3 31 31 H 1.09004 * 109.46948 * 239.99779 * 2 1 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47418 * 299.99654 * 3 2 1 34 34 H 1.09004 * 109.46935 * 60.00399 * 3 2 1 35 35 H 0.97004 * 120.00021 * 354.85387 * 11 9 8 36 36 H 1.07998 * 119.91562 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.08230 * 180.29654 * 14 13 12 38 38 H 0.96993 * 120.00441 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.08412 * 180.02562 * 24 15 14 40 40 H 1.07998 * 119.91556 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7908 -0.3682 2.4700 6 7 2.3620 -1.1754 3.2896 7 1 2.3184 -1.1138 4.2567 8 6 3.0399 -2.1356 2.5910 9 6 3.8251 -3.2452 3.1504 10 8 4.3811 -4.0321 2.4077 11 7 3.9291 -3.3909 4.4863 12 6 4.5813 -4.4993 5.0164 13 6 4.5043 -5.7289 4.3616 14 6 5.1461 -6.8183 4.8721 15 6 5.8834 -6.7013 6.0668 16 6 6.5508 -7.8243 6.6010 17 1 6.7228 -7.8947 7.6649 18 6 6.9896 -8.8464 5.7523 19 7 6.9846 -8.6678 4.4558 20 14 7.5828 -10.4660 6.4697 21 1 7.4890 -10.4151 7.9508 22 1 6.7360 -11.5735 5.9582 23 1 8.9942 -10.6970 6.0702 24 6 5.9522 -5.4577 6.7252 25 6 5.3052 -4.3771 6.2028 26 6 2.8427 -1.8491 1.2497 27 35 3.5231 -2.7979 -0.2377 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 3.5492 -2.7227 5.0781 36 1 3.9386 -5.8170 3.4459 37 1 5.0895 -7.7683 4.3616 38 1 7.2892 -9.3762 3.8675 39 1 6.5159 -5.3606 7.6412 40 1 5.3574 -3.4230 6.7062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069698009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:39 Heat of formation + Delta-G solvation = 53.521153 kcal Electronic energy + Delta-G solvation = -24892.168872 eV Core-core repulsion = 21140.205328 eV Total energy + Delta-G solvation = -3751.963544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.85072 -39.59383 -37.30180 -36.02040 -34.65861 -33.10531 -32.33028 -30.90528 -29.67756 -29.51853 -28.86389 -27.33820 -25.38735 -23.93771 -22.87001 -21.47737 -20.87500 -20.40641 -19.34231 -18.77831 -17.38942 -16.71009 -16.07899 -15.75926 -15.27661 -15.10742 -14.58657 -14.41164 -14.00576 -13.87443 -13.69085 -13.32301 -13.08427 -12.73869 -12.37547 -12.18459 -11.89159 -11.83809 -11.64238 -11.53098 -11.46726 -11.25204 -11.18732 -11.01014 -10.86883 -10.60297 -10.21693 -10.02727 -9.86537 -9.56851 -9.42711 -9.25632 -8.89167 -8.83074 -7.61926 -7.07643 -6.76008 -4.38154 0.97346 1.58145 2.15686 2.57089 2.66348 2.98475 3.05042 3.06732 3.10475 3.29854 3.47669 3.90081 4.23435 4.47478 4.59011 4.61722 4.95010 4.96564 5.10588 5.20539 5.44448 5.61656 5.64387 5.64871 5.72582 5.95552 6.02868 6.03906 6.07249 6.27948 6.58146 6.63257 6.86222 6.95248 7.07585 7.17976 7.48859 7.54487 7.64746 7.81801 7.98612 8.03993 8.21140 8.47685 8.57830 8.82181 8.90376 10.16321 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.019790 B = 0.002333 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.516694 B =11997.192354 C =13105.710214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 C -0.142 4.142 4 C 0.067 3.933 5 N -0.262 5.262 6 N -0.373 5.373 7 H 0.449 0.551 8 C 0.015 3.985 9 C 0.561 3.439 10 O -0.482 6.482 11 N -0.642 5.642 12 C -0.010 4.010 13 C -0.083 4.083 14 C -0.150 4.150 15 C 0.107 3.893 16 C -0.455 4.455 17 H 0.079 0.921 18 C 0.071 3.929 19 N -0.791 5.791 20 Si 0.912 3.088 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.212 4.212 25 C -0.102 4.102 26 C -0.144 4.144 27 Br 0.018 6.982 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.281 0.719 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 15.747 -7.981 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.200 4.200 4 C -0.094 4.094 5 N -0.094 5.094 6 N -0.089 5.089 7 H 0.295 0.705 8 C -0.117 4.117 9 C 0.344 3.656 10 O -0.353 6.353 11 N -0.285 5.285 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.170 4.170 15 C 0.104 3.896 16 C -0.485 4.485 17 H 0.097 0.903 18 C -0.147 4.147 19 N -0.416 5.416 20 Si 0.736 3.264 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.199 1.199 24 C -0.233 4.233 25 C -0.122 4.122 26 C -0.235 4.235 27 Br 0.102 6.898 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.220 0.780 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.565 15.452 -8.652 20.622 hybrid contribution 0.478 -0.692 1.059 1.352 sum -10.087 14.760 -7.593 19.423 Atomic orbital electron populations 1.21807 0.93582 1.02261 1.02320 1.19622 0.96280 0.95704 0.91895 1.21806 1.01318 0.94525 1.02320 1.21852 0.99338 0.95039 0.93141 1.73078 1.18717 1.17142 1.00482 1.43553 1.36403 1.19214 1.09709 0.70522 1.21850 1.02466 0.95591 0.91817 1.16882 0.81757 0.83883 0.83080 1.90951 1.44172 1.41982 1.58216 1.42786 1.56062 1.24475 1.05168 1.17085 1.07970 0.86019 0.99133 1.20436 1.00020 0.91318 0.98575 1.21066 0.99024 0.98029 0.98900 1.17715 0.89024 0.91587 0.91277 1.19605 1.31840 1.01874 0.95159 0.90312 1.25960 0.94104 1.00068 0.94580 1.69827 1.34703 1.33281 1.03806 0.86201 0.78783 0.81016 0.80376 1.18444 1.19705 1.19928 1.20586 1.06631 0.92941 1.03098 1.20027 0.98509 0.97593 0.96044 1.22310 1.07731 1.01080 0.92366 1.96697 1.85280 1.73730 1.34095 0.91912 0.92472 0.91998 0.88926 0.92486 0.91910 0.91998 0.77981 0.87897 0.85762 0.90752 0.88477 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 2 C -0.01 -0.14 3.34 -91.77 -0.31 -0.45 16 3 C -0.14 -1.15 9.18 37.15 0.34 -0.81 16 4 C 0.07 0.81 5.73 -82.44 -0.47 0.34 16 5 N -0.26 -3.08 12.14 33.65 0.41 -2.67 16 6 N -0.37 -4.11 6.86 33.49 0.23 -3.88 16 7 H 0.45 3.32 8.23 -190.46 -1.57 1.75 16 8 C 0.02 0.22 7.16 -82.01 -0.59 -0.37 16 9 C 0.56 9.86 7.52 -12.71 -0.10 9.76 16 10 O -0.48 -10.37 13.24 5.23 0.07 -10.31 16 11 N -0.64 -10.63 5.30 -10.83 -0.06 -10.69 16 12 C -0.01 -0.22 6.28 -83.61 -0.52 -0.74 16 13 C -0.08 -2.00 8.57 -39.78 -0.34 -2.35 16 14 C -0.15 -3.91 8.61 -39.26 -0.34 -4.25 16 15 C 0.11 2.78 5.56 -106.80 -0.59 2.19 16 16 C -0.46 -11.78 9.05 -37.86 -0.34 -12.13 16 17 H 0.08 1.94 7.87 -52.48 -0.41 1.53 16 18 C 0.07 1.75 5.25 -17.33 -0.09 1.66 16 19 N -0.79 -20.53 10.80 55.55 0.60 -19.93 16 20 Si 0.91 18.45 29.57 -169.99 -5.03 13.43 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.21 -4.97 9.74 -39.26 -0.38 -5.35 16 25 C -0.10 -2.12 9.89 -39.78 -0.39 -2.52 16 26 C -0.14 -2.05 6.73 -38.89 -0.26 -2.31 16 27 Br 0.02 0.26 31.95 -68.01 -2.17 -1.91 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.85 7.44 -51.93 -0.39 0.46 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.39 4.67 8.01 -40.82 -0.33 4.34 16 36 H 0.10 2.48 6.43 -52.49 -0.34 2.14 16 37 H 0.12 3.38 6.16 -52.49 -0.32 3.06 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -30.39 360.34 -10.44 -40.83 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.87 Total: 7.82 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -4.05 Total: -18.13 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.18 Total: -37.16 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -2.17 Total: -1.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.39 -10.44 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069698009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.352 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds