Wall clock time and date at job start Tue Mar 31 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99849 * 2 1 4 4 C 1.52998 * 109.47292 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47176 * 180.02562 * 5 4 3 7 7 O 1.21300 * 119.99751 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99961 * 179.97438 * 6 5 4 9 9 C 1.40141 * 120.00119 * 184.47130 * 8 6 5 10 10 C 1.38647 * 120.09827 * 325.33572 * 9 8 6 11 11 C 1.38255 * 120.00813 * 179.97438 * 10 9 8 12 12 C 1.50703 * 119.89389 * 179.97438 * 11 10 9 13 13 F 1.39894 * 109.47269 * 90.00052 * 12 11 10 14 14 F 1.39898 * 109.46679 * 210.00539 * 12 11 10 15 15 F 1.39903 * 109.47101 * 329.99695 * 12 11 10 16 16 C 1.38303 * 120.20712 * 359.72553 * 11 10 9 17 17 C 1.38195 * 120.20067 * 0.55335 * 16 11 10 18 18 C 1.38791 * 119.98626 * 359.44518 * 17 16 11 19 19 S 1.76196 * 120.10007 * 180.25410 * 18 17 16 20 20 C 1.81403 * 103.00287 * 0.02562 * 19 18 17 21 21 C 1.50699 * 109.47194 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99554 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00053 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99811 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99928 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47191 * 89.99696 * 25 23 21 27 27 H 1.48497 * 109.47063 * 210.00244 * 25 23 21 28 28 H 1.48503 * 109.46813 * 329.99827 * 25 23 21 29 29 H 1.09004 * 109.46699 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47109 * 299.99780 * 1 2 3 31 31 H 1.08994 * 109.47016 * 60.00365 * 1 2 3 32 32 H 1.08998 * 109.47029 * 59.99563 * 3 2 1 33 33 H 1.08999 * 109.47146 * 300.00169 * 3 2 1 34 34 H 1.08998 * 109.47324 * 59.99886 * 4 3 2 35 35 H 1.08999 * 109.47280 * 300.00229 * 4 3 2 36 36 H 1.08998 * 109.47064 * 59.99755 * 5 4 3 37 37 H 1.09003 * 109.46849 * 300.00001 * 5 4 3 38 38 H 0.96999 * 120.00193 * 4.47441 * 8 6 5 39 39 H 1.08004 * 119.99704 * 359.95938 * 10 9 8 40 40 H 1.08006 * 119.89690 * 180.30395 * 16 11 10 41 41 H 1.07994 * 120.00596 * 179.72113 * 17 16 11 42 42 H 1.08995 * 109.46696 * 299.99792 * 20 19 18 43 43 H 1.08999 * 109.46506 * 59.99962 * 20 19 18 44 44 H 0.97003 * 119.99863 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0000 6 6 5.6600 2.4637 0.0000 7 8 6.1816 1.3686 0.0000 8 7 6.4238 3.5740 -0.0010 9 6 7.8178 3.4655 -0.0957 10 6 8.4742 2.3994 0.5000 11 6 9.8495 2.2939 0.4051 12 6 10.5604 1.1343 1.0540 13 9 10.6500 0.0745 0.1452 14 9 11.8464 1.5308 1.4364 15 9 9.8448 0.7213 2.1830 16 6 10.5742 3.2463 -0.2880 17 6 9.9294 4.3156 -0.8801 18 6 8.5491 4.4296 -0.7900 19 16 7.7232 5.7881 -1.5495 20 6 9.0832 6.7245 -2.3005 21 6 8.5304 7.9390 -3.0007 22 1 7.4671 8.1284 -2.9949 23 6 9.3819 8.8079 -3.6496 24 7 8.8994 9.8675 -4.2611 25 14 11.2207 8.4791 -3.6615 26 1 11.5676 7.6493 -4.8431 27 1 11.9536 9.7688 -3.7298 28 1 11.6025 7.7579 -2.4207 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8465 -0.8900 34 1 3.8575 0.6438 -0.8891 35 1 3.8567 0.6441 0.8908 36 1 3.8356 3.1240 0.8895 37 1 3.8363 3.1229 -0.8905 38 1 6.0088 4.4483 0.0637 39 1 7.9112 1.6514 1.0385 40 1 11.6479 3.1563 -0.3632 41 1 10.4989 5.0599 -1.4167 42 1 9.7800 7.0392 -1.5237 43 1 9.6035 6.0941 -3.0217 44 1 9.4985 10.4790 -4.7173 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069704264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:17 Heat of formation + Delta-G solvation = -218.117254 kcal Electronic energy + Delta-G solvation = -31389.709376 eV Core-core repulsion = 26404.121702 eV Total energy + Delta-G solvation = -4985.587674 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.13614 -47.66130 -47.58720 -40.71181 -38.81479 -38.16241 -35.08658 -33.97820 -33.31927 -32.00007 -30.26063 -29.57384 -28.05540 -26.21838 -26.04449 -23.73408 -22.65641 -22.35826 -21.63703 -20.47255 -18.81537 -18.46020 -18.35831 -17.57695 -17.42505 -16.94212 -16.69912 -16.61199 -16.24138 -15.74892 -15.30133 -15.01362 -14.70627 -14.48898 -14.42642 -14.23400 -14.15753 -14.05536 -13.85250 -13.83949 -13.76338 -13.60197 -13.41552 -13.12622 -12.81492 -12.51853 -12.45960 -12.44660 -12.11192 -12.04493 -11.58660 -11.36268 -11.22713 -11.02119 -10.81333 -10.56008 -10.43931 -10.02281 -10.00930 -9.94908 -9.73040 -9.47126 -8.91121 -8.49235 -7.05319 -6.39169 -4.44938 0.81022 1.18419 1.89837 2.37794 2.62685 2.82943 3.05015 3.10417 3.14204 3.20566 3.41223 3.47725 3.76630 4.06260 4.12266 4.37573 4.45948 4.61902 4.74310 4.80484 4.90484 4.91770 4.95319 4.97730 5.05662 5.06907 5.12457 5.25457 5.27763 5.32303 5.36135 5.68330 5.79356 5.86029 5.95672 6.04949 6.14447 6.23213 6.25554 6.34608 6.72542 6.81293 7.13499 7.19291 7.91771 8.04351 8.59019 9.14712 10.72151 Molecular weight = 377.11amu Principal moments of inertia in cm(-1) A = 0.006052 B = 0.002887 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4625.457359 B = 9695.325041 C =13990.468321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.105 4.105 5 C -0.137 4.137 6 C 0.516 3.484 7 O -0.521 6.521 8 N -0.664 5.664 9 C 0.146 3.854 10 C -0.055 4.055 11 C -0.192 4.192 12 C 0.514 3.486 13 F -0.178 7.178 14 F -0.179 7.179 15 F -0.179 7.179 16 C -0.061 4.061 17 C -0.125 4.125 18 C -0.072 4.072 19 S -0.101 6.101 20 C 0.026 3.974 21 C -0.525 4.525 22 H 0.086 0.914 23 C 0.085 3.915 24 N -0.883 5.883 25 Si 0.876 3.124 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.417 0.583 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 -15.357 11.123 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.177 4.177 6 C 0.304 3.696 7 O -0.396 6.396 8 N -0.310 5.310 9 C 0.045 3.955 10 C -0.077 4.077 11 C -0.198 4.198 12 C 0.460 3.540 13 F -0.159 7.159 14 F -0.161 7.161 15 F -0.160 7.160 16 C -0.082 4.082 17 C -0.150 4.150 18 C -0.189 4.189 19 S 0.149 5.851 20 C -0.121 4.121 21 C -0.564 4.564 22 H 0.104 0.896 23 C -0.121 4.121 24 N -0.520 5.520 25 Si 0.702 3.298 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.189 1.189 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.255 0.745 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.665 -15.747 10.890 21.015 hybrid contribution 2.077 0.278 -0.025 2.095 sum -6.588 -15.469 10.865 20.019 Atomic orbital electron populations 1.22747 0.80943 1.02814 1.00009 1.87889 1.19744 1.27977 1.95429 1.22546 0.93931 0.84768 1.00373 1.21225 0.92314 0.95532 1.05189 1.21551 0.90808 0.99893 1.05416 1.20791 0.89781 0.83745 0.75268 1.90724 1.74717 1.26442 1.47706 1.43502 1.04228 1.10644 1.72585 1.16892 0.82751 0.96348 0.99501 1.20829 0.92131 0.97819 0.96910 1.19659 0.94695 0.97646 1.07823 1.18207 0.76716 0.82677 0.76415 1.93220 1.96129 1.59433 1.67112 1.93173 1.40583 1.90722 1.91605 1.93178 1.78063 1.91480 1.53280 1.20788 1.00134 0.92477 0.94807 1.21113 0.92564 0.99352 1.01986 1.22328 0.97082 1.00315 0.99137 1.85332 1.18677 1.19330 1.61734 1.21842 0.93523 0.98222 0.98535 1.20326 0.96503 1.05031 1.34564 0.89636 1.24817 0.98872 0.94348 0.94040 1.69839 1.35932 1.12749 1.33451 0.86841 0.85096 0.78557 0.79320 1.19593 1.20501 1.18895 0.89615 0.94067 0.93984 0.93149 0.93007 0.90044 0.90147 0.88152 0.87828 0.74546 0.82999 0.84660 0.84058 0.93500 0.93957 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.83 10.70 -35.23 -0.38 -4.20 16 3 C 0.06 0.47 5.94 37.16 0.22 0.69 16 4 C -0.10 -0.93 4.87 -26.73 -0.13 -1.06 16 5 C -0.14 -1.06 5.70 -27.88 -0.16 -1.21 16 6 C 0.52 6.09 7.68 -10.99 -0.08 6.00 16 7 O -0.52 -7.87 13.41 5.54 0.07 -7.80 16 8 N -0.66 -8.09 5.02 -9.71 -0.05 -8.14 16 9 C 0.15 2.16 6.32 -83.43 -0.53 1.63 16 10 C -0.05 -0.81 8.05 -39.42 -0.32 -1.12 16 11 C -0.19 -2.72 5.45 -104.59 -0.57 -3.29 16 12 C 0.51 6.88 3.36 36.01 0.12 7.00 16 13 F -0.18 -2.48 17.30 2.25 0.04 -2.44 16 14 F -0.18 -2.30 16.46 2.25 0.04 -2.26 16 15 F -0.18 -2.41 16.45 2.25 0.04 -2.37 16 16 C -0.06 -0.84 9.39 -39.57 -0.37 -1.21 16 17 C -0.13 -1.92 9.36 -39.39 -0.37 -2.28 16 18 C -0.07 -1.16 6.12 -38.90 -0.24 -1.39 16 19 S -0.10 -1.80 20.72 -107.50 -2.23 -4.02 16 20 C 0.03 0.56 3.16 36.01 0.11 0.68 16 21 C -0.53 -13.56 9.68 -34.44 -0.33 -13.89 16 22 H 0.09 2.41 7.96 -52.48 -0.42 1.99 16 23 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 24 N -0.88 -24.96 13.96 55.43 0.77 -24.19 16 25 Si 0.88 19.38 27.47 -169.99 -4.67 14.71 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.42 4.30 7.97 -40.82 -0.33 3.98 16 39 H 0.15 2.27 5.74 -52.48 -0.30 1.97 16 40 H 0.14 1.56 7.60 -52.48 -0.40 1.16 16 41 H 0.14 2.17 5.88 -52.49 -0.31 1.86 16 42 H 0.05 0.98 6.81 -51.93 -0.35 0.62 16 43 H 0.04 0.88 7.18 -51.92 -0.37 0.51 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -30.20 394.43 -7.49 -37.69 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.44 Total: 3.09 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.63 Total: -6.00 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.72 Total: -32.33 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.30 Total: -12.00 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.11 Total: -7.07 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.67 Total: 14.71 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.23 Total: -4.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.20 -7.49 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069704264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.428 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds