Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34824 * 117.00031 * 2 1 4 4 O 1.21549 * 120.00086 * 0.02562 * 3 2 1 5 5 C 1.46984 * 120.00062 * 179.97438 * 3 2 1 6 6 C 1.36695 * 125.16583 * 180.02562 * 5 3 2 7 7 C 1.36757 * 114.73938 * 179.72918 * 6 5 3 8 8 C 1.36655 * 114.74630 * 0.50731 * 7 6 5 9 9 C 1.47169 * 125.15604 * 179.78400 * 8 7 6 10 10 O 1.21642 * 120.00234 * 359.72241 * 9 8 7 11 11 N 1.34783 * 119.99550 * 179.71990 * 9 8 7 12 12 C 1.40025 * 119.99646 * 185.52800 * 11 9 8 13 13 C 1.38682 * 120.10334 * 24.83115 * 12 11 9 14 14 C 1.38238 * 120.00797 * 180.02562 * 13 12 11 15 15 C 1.38312 * 120.20990 * 359.97438 * 14 13 12 16 16 C 1.38197 * 120.20565 * 0.02562 * 15 14 13 17 17 C 1.38781 * 119.99450 * 0.02562 * 16 15 14 18 18 S 1.76193 * 120.10811 * 179.97438 * 17 16 15 19 19 C 1.81404 * 102.99967 * 359.97438 * 18 17 16 20 20 C 1.50703 * 109.47176 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99967 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99777 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00452 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99796 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46971 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.46856 * 119.99465 * 24 22 20 27 27 H 1.48496 * 109.47237 * 239.99479 * 24 22 20 28 28 S 1.75832 * 109.68464 * 359.52256 * 8 7 6 29 29 H 1.09000 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47052 * 299.99526 * 1 2 3 31 31 H 1.09000 * 109.47182 * 59.99852 * 1 2 3 32 32 H 1.08008 * 122.63276 * 359.97438 * 6 5 3 33 33 H 1.08001 * 122.62719 * 180.29128 * 7 6 5 34 34 H 0.96993 * 119.99990 * 5.52975 * 11 9 8 35 35 H 1.08005 * 119.99575 * 0.03919 * 13 12 11 36 36 H 1.07993 * 119.89769 * 179.97438 * 14 13 12 37 37 H 1.07996 * 119.89383 * 180.28342 * 15 14 13 38 38 H 1.08001 * 120.00083 * 180.02562 * 16 15 14 39 39 H 1.08994 * 109.47334 * 299.99987 * 19 18 17 40 40 H 1.09006 * 109.46984 * 60.00547 * 19 18 17 41 41 H 0.96997 * 120.00106 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2207 0.0005 5 6 3.5320 1.2782 0.0006 6 6 4.2597 2.4354 0.0011 7 6 5.6158 2.2586 0.0075 8 6 6.0227 0.9541 0.0012 9 6 7.4236 0.5033 0.0015 10 8 8.3253 1.3199 0.0025 11 7 7.7076 -0.8142 0.0006 12 6 9.0350 -1.2444 0.1177 13 6 9.9777 -0.4327 0.7307 14 6 11.2877 -0.8591 0.8447 15 6 11.6630 -2.0948 0.3495 16 6 10.7308 -2.9107 -0.2630 17 6 9.4135 -2.4907 -0.3830 18 16 8.2226 -3.5282 -1.1639 19 6 9.1936 -4.9901 -1.6229 20 6 8.3015 -5.9891 -2.3139 21 1 7.2551 -5.7665 -2.4624 22 6 8.8212 -7.1870 -2.7564 23 7 10.0954 -7.4578 -2.5760 24 14 7.7152 -8.4256 -3.6122 25 1 6.3341 -7.8852 -3.6899 26 1 8.2254 -8.6802 -4.9835 27 1 7.7067 -9.6959 -2.8434 28 16 4.6185 -0.1043 0.0004 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.7998 3.4126 0.0008 33 1 6.3107 3.0853 0.0132 34 1 6.9925 -1.4644 -0.0811 35 1 9.6883 0.5326 1.1192 36 1 12.0204 -0.2254 1.3220 37 1 12.6868 -2.4247 0.4454 38 1 11.0274 -3.8751 -0.6481 39 1 9.9981 -4.6951 -2.2966 40 1 9.6179 -5.4410 -0.7257 41 1 10.4610 -8.3005 -2.8877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069738229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = -55.417184 kcal Electronic energy + Delta-G solvation = -27392.500060 eV Core-core repulsion = 23262.744107 eV Total energy + Delta-G solvation = -4129.755953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78640 -40.62074 -38.54695 -37.66131 -36.66971 -34.89824 -33.32131 -31.26058 -30.83369 -29.53724 -28.66741 -28.13746 -26.02309 -23.71092 -22.96539 -22.69501 -22.29152 -21.03349 -19.58586 -19.29550 -18.01982 -17.54677 -17.03258 -16.83347 -16.52961 -16.31815 -16.10684 -15.52391 -15.10899 -15.10395 -14.49933 -14.29040 -14.09964 -13.94342 -13.69093 -13.34172 -13.22140 -13.06826 -12.88435 -12.84726 -12.52334 -12.44482 -12.31641 -11.88224 -11.53001 -11.31966 -11.26789 -11.12137 -11.01683 -10.81124 -10.59894 -10.21705 -9.97115 -9.74409 -9.43961 -9.31884 -9.23923 -9.11483 -8.70526 -8.12674 -6.69826 -6.33329 -4.39404 -0.47976 0.81292 1.24301 1.30329 1.56995 1.67694 2.14266 2.25996 2.37717 2.78346 2.86176 3.17015 3.24902 3.29257 3.50681 4.00786 4.23837 4.27780 4.37425 4.64869 4.69804 4.78380 4.83327 5.04577 5.11700 5.16507 5.25381 5.40184 5.45239 5.51667 5.65449 5.71309 5.74547 5.83425 6.08509 6.33586 6.43889 6.59165 6.77306 6.87194 6.90498 7.17242 7.17745 7.21384 7.59501 7.79506 7.81499 8.61805 9.25174 10.77794 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.007445 B = 0.002614 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.024427 B =10710.661173 C =14256.991937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.540 3.460 4 O -0.493 6.493 5 C -0.235 4.235 6 C -0.055 4.055 7 C -0.074 4.074 8 C -0.228 4.228 9 C 0.587 3.413 10 O -0.503 6.503 11 N -0.652 5.652 12 C 0.145 3.855 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.092 4.092 18 S -0.172 6.172 19 C 0.079 3.921 20 C -0.520 4.520 21 H 0.069 0.931 22 C 0.069 3.931 23 N -0.888 5.888 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.280 1.280 28 S 0.257 5.743 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.412 0.588 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 16.450 7.844 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.269 6.269 3 C 0.383 3.617 4 O -0.382 6.382 5 C -0.355 4.355 6 C -0.089 4.089 7 C -0.107 4.107 8 C -0.350 4.350 9 C 0.373 3.627 10 O -0.379 6.379 11 N -0.295 5.295 12 C 0.045 3.955 13 C -0.136 4.136 14 C -0.143 4.143 15 C -0.134 4.134 16 C -0.139 4.139 17 C -0.208 4.208 18 S 0.074 5.926 19 C -0.068 4.068 20 C -0.560 4.560 21 H 0.088 0.912 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.735 3.265 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.206 1.206 28 S 0.528 5.472 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.183 0.817 34 H 0.250 0.750 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.026 15.621 7.558 21.113 hybrid contribution 0.511 0.222 -0.353 0.659 sum -11.515 15.842 7.205 20.868 Atomic orbital electron populations 1.23369 0.74933 1.04339 1.02873 1.86588 1.24368 1.31740 1.84252 1.19704 0.86897 0.82011 0.73069 1.90888 1.65766 1.35883 1.45661 1.23809 0.94287 0.98881 1.18519 1.20575 0.92369 0.98799 0.97195 1.20526 0.95272 0.96046 0.98859 1.25091 0.97430 0.98805 1.13655 1.17030 0.86538 0.82222 0.76902 1.90795 1.45772 1.53094 1.48287 1.43321 1.08186 1.07003 1.71035 1.17135 0.83607 0.93744 1.00989 1.21203 0.92725 1.00451 0.99218 1.20953 0.95592 0.96425 1.01337 1.21075 0.99287 0.94301 0.98732 1.21243 0.91343 1.00903 1.00367 1.21816 0.98464 0.97465 1.03024 1.85052 1.18909 1.19174 1.69443 1.21388 0.96671 0.88779 0.99923 1.20643 0.95873 1.00509 1.38928 0.91241 1.24948 0.95367 0.97783 0.95502 1.69946 1.12312 1.24539 1.45754 0.86269 0.80567 0.80556 0.79131 1.19347 1.20609 1.20607 1.84607 0.92563 1.05226 1.64849 0.87448 0.91519 0.91481 0.81958 0.81742 0.75048 0.83851 0.85924 0.85929 0.84528 0.93596 0.93613 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.35 10.41 -40.83 -0.43 -3.78 16 3 C 0.54 5.74 7.94 34.27 0.27 6.01 16 4 O -0.49 -6.07 16.61 -19.30 -0.32 -6.39 16 5 C -0.24 -2.32 6.46 -36.60 -0.24 -2.56 16 6 C -0.06 -0.48 9.88 -40.67 -0.40 -0.88 16 7 C -0.07 -0.69 9.88 -40.69 -0.40 -1.09 16 8 C -0.23 -2.52 6.46 -36.53 -0.24 -2.76 16 9 C 0.59 8.14 7.61 -12.63 -0.10 8.05 16 10 O -0.50 -7.95 13.98 5.24 0.07 -7.88 16 11 N -0.65 -9.62 5.16 -10.75 -0.06 -9.67 16 12 C 0.15 2.43 6.44 -83.46 -0.54 1.89 16 13 C -0.11 -1.77 8.71 -39.42 -0.34 -2.11 16 14 C -0.12 -1.70 10.04 -39.55 -0.40 -2.10 16 15 C -0.11 -1.69 10.04 -39.57 -0.40 -2.08 16 16 C -0.11 -2.02 9.36 -39.40 -0.37 -2.38 16 17 C -0.09 -1.70 6.12 -38.89 -0.24 -1.94 16 18 S -0.17 -3.49 20.55 -107.50 -2.21 -5.70 16 19 C 0.08 1.91 4.09 36.01 0.15 2.06 16 20 C -0.52 -13.75 9.13 -34.44 -0.31 -14.07 16 21 H 0.07 1.82 7.71 -52.48 -0.40 1.41 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 24 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 S 0.26 2.55 22.18 -107.50 -2.38 0.16 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.16 1.13 8.04 -52.48 -0.42 0.71 16 33 H 0.17 1.32 8.04 -52.49 -0.42 0.89 16 34 H 0.41 5.70 6.76 -40.82 -0.28 5.43 16 35 H 0.14 2.15 5.79 -52.48 -0.30 1.85 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.14 2.57 5.88 -52.49 -0.31 2.26 16 39 H 0.05 1.17 7.75 -51.93 -0.40 0.77 16 40 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -30.84 387.80 -10.53 -41.37 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.19 Total: 5.46 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.58 Total: -10.92 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.68 Total: -33.51 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.67 Total: -18.04 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -4.59 Total: -5.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.84 -10.53 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069738229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.046 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds