Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34824 * 117.00031 * 2 1 4 4 O 1.21549 * 120.00086 * 0.02562 * 3 2 1 5 5 C 1.46984 * 120.00062 * 179.97438 * 3 2 1 6 6 C 1.36695 * 125.16583 * 180.02562 * 5 3 2 7 7 C 1.36757 * 114.73938 * 179.72918 * 6 5 3 8 8 C 1.36655 * 114.74630 * 0.50731 * 7 6 5 9 9 C 1.47169 * 125.15604 * 179.78400 * 8 7 6 10 10 O 1.21642 * 120.00234 * 359.72241 * 9 8 7 11 11 N 1.34783 * 119.99550 * 179.71990 * 9 8 7 12 12 C 1.40025 * 119.99646 * 185.52800 * 11 9 8 13 13 C 1.38682 * 120.10334 * 24.83115 * 12 11 9 14 14 C 1.38238 * 120.00797 * 180.02562 * 13 12 11 15 15 C 1.38312 * 120.20990 * 359.97438 * 14 13 12 16 16 C 1.38197 * 120.20565 * 0.02562 * 15 14 13 17 17 C 1.38781 * 119.99450 * 0.02562 * 16 15 14 18 18 S 1.76193 * 120.10811 * 179.97438 * 17 16 15 19 19 C 1.81404 * 102.99967 * 359.97438 * 18 17 16 20 20 C 1.50703 * 109.47176 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99967 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99777 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00452 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99796 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46971 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.46856 * 119.99465 * 24 22 20 27 27 H 1.48496 * 109.47237 * 239.99479 * 24 22 20 28 28 S 1.75832 * 109.68464 * 359.52256 * 8 7 6 29 29 H 1.09000 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47052 * 299.99526 * 1 2 3 31 31 H 1.09000 * 109.47182 * 59.99852 * 1 2 3 32 32 H 1.08008 * 122.63276 * 359.97438 * 6 5 3 33 33 H 1.08001 * 122.62719 * 180.29128 * 7 6 5 34 34 H 0.96993 * 119.99990 * 5.52975 * 11 9 8 35 35 H 1.08005 * 119.99575 * 0.03919 * 13 12 11 36 36 H 1.07993 * 119.89769 * 179.97438 * 14 13 12 37 37 H 1.07996 * 119.89383 * 180.28342 * 15 14 13 38 38 H 1.08001 * 120.00083 * 180.02562 * 16 15 14 39 39 H 1.08994 * 109.47334 * 299.99987 * 19 18 17 40 40 H 1.09006 * 109.46984 * 60.00547 * 19 18 17 41 41 H 0.96997 * 120.00106 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2207 0.0005 5 6 3.5320 1.2782 0.0006 6 6 4.2597 2.4354 0.0011 7 6 5.6158 2.2586 0.0075 8 6 6.0227 0.9541 0.0012 9 6 7.4236 0.5033 0.0015 10 8 8.3253 1.3199 0.0025 11 7 7.7076 -0.8142 0.0006 12 6 9.0350 -1.2444 0.1177 13 6 9.9777 -0.4327 0.7307 14 6 11.2877 -0.8591 0.8447 15 6 11.6630 -2.0948 0.3495 16 6 10.7308 -2.9107 -0.2630 17 6 9.4135 -2.4907 -0.3830 18 16 8.2226 -3.5282 -1.1639 19 6 9.1936 -4.9901 -1.6229 20 6 8.3015 -5.9891 -2.3139 21 1 7.2551 -5.7665 -2.4624 22 6 8.8212 -7.1870 -2.7564 23 7 10.0954 -7.4578 -2.5760 24 14 7.7152 -8.4256 -3.6122 25 1 6.3341 -7.8852 -3.6899 26 1 8.2254 -8.6802 -4.9835 27 1 7.7067 -9.6959 -2.8434 28 16 4.6185 -0.1043 0.0004 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.7998 3.4126 0.0008 33 1 6.3107 3.0853 0.0132 34 1 6.9925 -1.4644 -0.0811 35 1 9.6883 0.5326 1.1192 36 1 12.0204 -0.2254 1.3220 37 1 12.6868 -2.4247 0.4454 38 1 11.0274 -3.8751 -0.6481 39 1 9.9981 -4.6951 -2.2966 40 1 9.6179 -5.4410 -0.7257 41 1 10.4610 -8.3005 -2.8877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069738229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = -71.156389 kcal Electronic energy + Delta-G solvation = -27393.182563 eV Core-core repulsion = 23262.744107 eV Total energy + Delta-G solvation = -4130.438456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.059 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79841 -41.53380 -39.65694 -38.54417 -37.47025 -36.09438 -35.33250 -32.26794 -32.07320 -30.73081 -30.50146 -28.81904 -26.83964 -25.47695 -24.27357 -23.87936 -23.11949 -22.18148 -20.52046 -20.15323 -19.27521 -18.61126 -18.31958 -18.05438 -17.56715 -17.46270 -16.94640 -16.80002 -16.65861 -16.10533 -15.94605 -15.42979 -15.09232 -14.80786 -14.80029 -14.67524 -14.60344 -14.30502 -14.23325 -14.01699 -13.66853 -13.58816 -13.18568 -13.08178 -12.81022 -12.77856 -12.55800 -12.27565 -11.96270 -11.93358 -11.92645 -11.70064 -11.62328 -11.18212 -11.01272 -10.86764 -10.55142 -10.26999 -9.87261 -9.38842 -8.36251 -8.25208 -6.50378 -1.30519 0.01076 0.14102 0.30260 0.46542 0.71842 0.74723 1.40588 1.41656 1.46308 1.53367 1.55089 1.65158 1.80237 1.87293 2.35299 2.74772 2.99508 3.30607 3.61004 3.84528 3.89768 4.11151 4.12836 4.23763 4.30912 4.31160 4.42891 4.43224 4.66362 4.74367 4.75695 4.81610 4.85689 4.89366 5.03555 5.09216 5.12005 5.21597 5.37440 5.51772 5.54648 5.81006 5.95619 6.06474 6.40619 6.56855 6.67046 7.18674 8.75912 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.007445 B = 0.002614 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.024427 B =10710.661173 C =14256.991937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.541 3.459 4 O -0.513 6.513 5 C -0.239 4.239 6 C -0.047 4.047 7 C -0.056 4.056 8 C -0.249 4.249 9 C 0.591 3.409 10 O -0.524 6.524 11 N -0.655 5.655 12 C 0.144 3.856 13 C -0.121 4.121 14 C -0.103 4.103 15 C -0.111 4.111 16 C -0.130 4.130 17 C -0.119 4.119 18 S -0.162 6.162 19 C 0.085 3.915 20 C -0.541 4.541 21 H 0.068 0.932 22 C 0.019 3.981 23 N -0.921 5.921 24 Si 0.976 3.024 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.273 1.273 28 S 0.261 5.739 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.414 0.586 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 17.852 8.367 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.385 3.615 4 O -0.404 6.404 5 C -0.359 4.359 6 C -0.081 4.081 7 C -0.090 4.090 8 C -0.371 4.371 9 C 0.379 3.621 10 O -0.402 6.402 11 N -0.299 5.299 12 C 0.044 3.956 13 C -0.142 4.142 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.154 4.154 17 C -0.234 4.234 18 S 0.083 5.917 19 C -0.063 4.063 20 C -0.579 4.579 21 H 0.086 0.914 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.799 3.201 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.198 1.198 28 S 0.532 5.468 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.201 0.799 33 H 0.198 0.802 34 H 0.252 0.748 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.133 0.867 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.836 17.023 8.095 22.805 hybrid contribution 0.759 -0.065 -0.431 0.875 sum -12.076 16.958 7.665 22.185 Atomic orbital electron populations 1.23677 0.73216 1.06175 1.03221 1.86586 1.26144 1.31172 1.83815 1.19798 0.87078 0.82065 0.72538 1.90875 1.66218 1.36497 1.46821 1.23952 0.94199 0.99268 1.18483 1.20784 0.91929 0.99363 0.95999 1.20741 0.95742 0.95689 0.96788 1.24867 0.96291 0.99782 1.16136 1.17304 0.87492 0.81486 0.75838 1.90767 1.46773 1.53341 1.49328 1.43386 1.07598 1.07637 1.71287 1.17299 0.84774 0.93111 1.00465 1.21453 0.93190 1.00535 0.99036 1.21408 0.95688 0.96007 0.99317 1.21373 1.00001 0.94169 0.97626 1.21239 0.91952 1.00798 1.01457 1.21789 0.98360 0.98198 1.05085 1.84668 1.18767 1.17656 1.70584 1.21005 0.96369 0.90602 0.98296 1.20981 0.96103 1.01488 1.39369 0.91355 1.25876 0.96743 0.99690 0.95985 1.70052 1.14005 1.25263 1.46634 0.85228 0.78828 0.77992 0.78022 1.18578 1.20014 1.19844 1.84605 0.92121 1.05115 1.64937 0.84944 0.91084 0.91266 0.79912 0.80232 0.74827 0.83035 0.81979 0.83082 0.86708 0.95997 0.95715 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -6.45 10.41 -57.36 -0.60 -7.05 16 3 C 0.54 10.88 7.94 70.11 0.56 11.43 16 4 O -0.51 -12.03 16.61 19.68 0.33 -11.70 16 5 C -0.24 -4.39 6.46 24.20 0.16 -4.23 16 6 C -0.05 -0.72 9.88 21.56 0.21 -0.50 16 7 C -0.06 -0.93 9.88 21.55 0.21 -0.72 16 8 C -0.25 -5.24 6.46 24.25 0.16 -5.08 16 9 C 0.59 15.93 7.61 86.59 0.66 16.59 16 10 O -0.52 -15.94 13.98 -4.16 -0.06 -15.99 16 11 N -0.66 -19.23 5.16 -306.17 -1.58 -20.81 16 12 C 0.14 4.77 6.44 38.25 0.25 5.02 16 13 C -0.12 -3.53 8.71 22.38 0.19 -3.34 16 14 C -0.10 -2.61 10.04 22.29 0.22 -2.39 16 15 C -0.11 -3.15 10.04 22.28 0.22 -2.92 16 16 C -0.13 -4.71 9.36 22.39 0.21 -4.50 16 17 C -0.12 -4.49 6.12 22.71 0.14 -4.35 16 18 S -0.16 -6.80 20.55 -56.49 -1.16 -7.96 16 19 C 0.08 4.33 4.09 71.24 0.29 4.62 16 20 C -0.54 -29.48 9.13 25.60 0.23 -29.25 16 21 H 0.07 3.65 7.71 -2.91 -0.02 3.63 16 22 C 0.02 1.01 5.46 84.65 0.46 1.47 16 23 N -0.92 -52.37 13.29 21.45 0.28 -52.08 16 24 Si 0.98 41.97 29.54 68.60 2.03 44.00 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 S 0.26 4.97 22.18 -56.49 -1.25 3.72 16 29 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.18 2.04 8.04 -2.91 -0.02 2.02 16 33 H 0.18 2.42 8.04 -2.91 -0.02 2.39 16 34 H 0.41 11.56 6.76 -92.71 -0.63 10.93 16 35 H 0.15 4.25 5.79 -2.91 -0.02 4.23 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.11 4.61 5.88 -2.91 -0.02 4.60 16 39 H 0.02 1.19 7.75 -2.39 -0.02 1.17 16 40 H 0.02 1.33 7.75 -2.39 -0.02 1.31 16 41 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -67.72 387.80 3.84 -63.88 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.48 Total: 20.63 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.38 Total: -16.62 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -1.30 Total: -72.89 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.33 Total: -34.75 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.41 Total: -4.24 kcal Total: -67.72 3.84 -63.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069738229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.275 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds