Wall clock time and date at job start Tue Mar 31 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00285 * 2 1 4 4 H 1.48499 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47356 * 300.00170 * 3 2 1 6 6 H 1.48501 * 109.46943 * 60.00116 * 3 2 1 7 7 C 1.37879 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00257 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99929 * 273.97693 * 10 9 7 12 12 C 1.53174 * 109.54482 * 59.56131 * 11 10 9 13 13 C 1.53088 * 109.16448 * 183.15393 * 12 11 10 14 14 O 1.42900 * 109.41934 * 57.60546 * 13 12 11 15 15 C 1.42905 * 114.09680 * 298.84756 * 14 13 12 16 16 C 1.53085 * 109.41906 * 61.15302 * 15 14 13 17 17 S 1.65601 * 119.99898 * 93.98234 * 10 9 7 18 18 O 1.42101 * 106.40278 * 29.05765 * 17 10 9 19 19 O 1.42103 * 106.39987 * 161.97812 * 17 10 9 20 20 C 1.76192 * 107.21912 * 275.51608 * 17 10 9 21 21 C 1.38248 * 119.98316 * 112.58153 * 20 17 10 22 22 C 1.38182 * 120.04320 * 179.72590 * 21 20 17 23 23 C 1.38495 * 119.99608 * 0.55193 * 22 21 20 24 24 F 1.35097 * 120.01698 * 179.74434 * 23 22 21 25 25 C 1.38410 * 119.96159 * 359.72482 * 23 22 21 26 26 C 1.38338 * 119.96274 * 359.97438 * 25 23 22 27 27 Cl 1.73598 * 119.99947 * 179.97438 * 26 25 23 28 28 H 0.96998 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46899 * 59.99725 * 9 7 2 30 30 H 1.09000 * 109.46515 * 300.00080 * 9 7 2 31 31 H 1.09003 * 109.54211 * 179.82789 * 11 10 9 32 32 H 1.09005 * 109.52233 * 303.05621 * 12 11 10 33 33 H 1.09000 * 109.52366 * 63.24327 * 12 11 10 34 34 H 1.09004 * 109.47911 * 297.62025 * 13 12 11 35 35 H 1.09002 * 109.47965 * 177.59256 * 13 12 11 36 36 H 1.08997 * 109.47637 * 301.16927 * 15 14 13 37 37 H 1.09005 * 109.47651 * 181.13940 * 15 14 13 38 38 H 1.08998 * 109.52575 * 182.48814 * 16 15 14 39 39 H 1.09007 * 109.52201 * 62.29735 * 16 15 14 40 40 H 1.08000 * 119.97470 * 0.02562 * 21 20 17 41 41 H 1.07993 * 120.00302 * 180.27048 * 22 21 20 42 42 H 1.08003 * 120.02084 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4993 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.7459 -4.1111 -1.2688 12 6 3.4871 -2.9805 -1.9890 13 6 3.9827 -3.4886 -3.3454 14 8 2.8720 -3.9605 -4.1107 15 6 2.1692 -5.0494 -3.5086 16 6 1.6007 -4.6041 -2.1587 17 16 2.6654 -4.3080 1.4274 18 8 1.5733 -4.1487 2.3226 19 8 3.2214 -5.5733 1.0970 20 6 3.9858 -3.3384 2.0759 21 6 3.8022 -2.6085 3.2356 22 6 4.8387 -1.8521 3.7484 23 6 6.0589 -1.8158 3.0942 24 9 7.0709 -1.0723 3.5924 25 6 6.2410 -2.5420 1.9301 26 6 5.2042 -3.3036 1.4215 27 17 5.4313 -4.2143 -0.0389 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5564 -0.8920 30 1 0.6240 -2.5575 0.8880 31 1 3.4344 -4.9329 -1.0720 32 1 2.8103 -2.1396 -2.1402 33 1 4.3376 -2.6610 -1.3868 34 1 4.6907 -4.3031 -3.1919 35 1 4.4738 -2.6759 -3.8806 36 1 2.8534 -5.8843 -3.3573 37 1 1.3538 -5.3612 -4.1614 38 1 1.1021 -5.4457 -1.6779 39 1 0.8857 -3.7959 -2.3133 40 1 2.8495 -2.6334 3.7436 41 1 4.6959 -1.2857 4.6567 42 1 7.1923 -2.5147 1.4194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069971962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:18 Heat of formation + Delta-G solvation = -135.196088 kcal Electronic energy + Delta-G solvation = -32546.092353 eV Core-core repulsion = 27980.063996 eV Total energy + Delta-G solvation = -4566.028357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.070 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.21972 -39.20775 -39.10167 -37.01575 -36.51507 -35.95250 -35.40947 -32.83437 -31.23797 -30.99361 -30.78299 -30.71835 -27.18350 -24.08776 -23.55499 -23.28377 -23.13504 -22.46263 -19.70921 -18.76110 -18.18663 -17.45272 -17.11283 -16.79837 -16.55431 -16.00230 -15.87992 -15.60063 -15.14382 -15.08085 -14.60914 -14.42593 -14.23585 -13.83389 -13.74290 -13.66017 -13.51911 -13.25946 -13.12791 -12.60587 -12.13523 -12.04667 -11.71455 -11.59194 -11.53579 -11.49136 -11.36153 -11.24907 -11.14589 -10.94402 -10.80542 -10.68661 -10.61075 -10.47119 -10.18713 -9.75666 -9.64548 -9.30382 -9.23881 -8.99104 -8.54387 -8.15922 -6.17194 -4.22357 0.46357 0.88753 0.93176 1.75361 3.05253 3.19277 3.28849 3.29855 3.46536 3.97014 4.11504 4.15780 4.31451 4.37610 4.65763 4.81801 5.10058 5.14112 5.16816 5.18777 5.30958 5.33716 5.44022 5.50334 5.52740 5.60108 5.67930 5.69129 5.85645 5.90058 5.93522 5.96266 6.17846 6.33445 6.42837 6.50816 6.63758 7.03828 7.27663 7.33042 7.45969 7.54067 7.79357 8.07370 8.81294 9.43285 10.90735 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.007627 B = 0.005947 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.331120 B = 4707.318604 C = 6064.072761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.242 3.758 10 N -0.968 5.968 11 C 0.155 3.845 12 C -0.171 4.171 13 C 0.064 3.936 14 O -0.383 6.383 15 C 0.066 3.934 16 C -0.164 4.164 17 S 2.685 3.315 18 O -0.952 6.952 19 O -0.963 6.963 20 C -0.666 4.666 21 C 0.031 3.969 22 C -0.170 4.170 23 C 0.158 3.842 24 F -0.129 7.129 25 C -0.171 4.171 26 C 0.083 3.917 27 Cl -0.030 7.030 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.926 -7.113 0.824 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.120 3.880 10 N -0.807 5.807 11 C 0.049 3.951 12 C -0.210 4.210 13 C -0.013 4.013 14 O -0.302 6.302 15 C -0.012 4.012 16 C -0.204 4.204 17 S 2.773 3.227 18 O -0.942 6.942 19 O -0.953 6.953 20 C -0.750 4.750 21 C 0.011 3.989 22 C -0.190 4.190 23 C 0.138 3.862 24 F -0.107 7.107 25 C -0.191 4.191 26 C 0.055 3.945 27 Cl 0.000 7.000 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.434 -7.677 0.967 12.202 hybrid contribution 1.366 1.854 0.308 2.324 sum 10.800 -5.823 1.274 12.336 Atomic orbital electron populations 1.69926 1.05904 1.27023 1.49553 1.24882 0.94714 0.98936 0.94944 0.86639 0.80172 0.84045 0.77822 1.19761 1.20821 1.20928 1.21564 0.93558 0.90554 1.51932 0.91866 1.19307 0.87155 0.81562 0.99932 1.57412 1.56205 1.49470 1.17615 1.20835 0.94724 0.95812 0.83770 1.22837 1.02222 1.00618 0.95310 1.22599 0.87971 0.98079 0.92689 1.87900 1.44638 1.51280 1.46369 1.22530 0.95826 0.88676 0.94119 1.22578 0.99529 1.02640 0.95623 1.02241 0.73426 0.73541 0.73525 1.93558 1.50039 1.86495 1.64156 1.93557 1.79983 1.37961 1.83816 1.31292 1.15520 1.20308 1.07831 1.20831 0.98848 0.88203 0.90984 1.21342 0.92034 1.02954 1.02629 1.17646 0.85168 0.90805 0.92619 1.91539 1.58525 1.73958 1.86703 1.20947 1.00614 1.00269 0.97255 1.20058 0.93132 0.92855 0.88444 1.98429 1.96875 1.71818 1.32899 0.92618 0.93344 0.93021 0.89320 0.87507 0.90621 0.94275 0.89092 0.93572 0.88959 0.90920 0.89272 0.82015 0.83292 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.05 13.29 55.43 0.74 -23.32 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -12.99 7.51 -34.44 -0.26 -13.24 16 8 H 0.06 1.50 7.29 -52.49 -0.38 1.12 16 9 C 0.24 5.50 4.97 -5.19 -0.03 5.47 16 10 N -0.97 -18.67 2.73 -108.38 -0.30 -18.97 16 11 C 0.16 2.64 1.63 -67.75 -0.11 2.53 16 12 C -0.17 -2.84 4.00 -26.60 -0.11 -2.95 16 13 C 0.06 0.92 6.84 37.20 0.25 1.17 16 14 O -0.38 -5.94 10.77 -35.23 -0.38 -6.32 16 15 C 0.07 0.90 6.84 37.20 0.25 1.15 16 16 C -0.16 -2.56 5.45 -26.59 -0.14 -2.71 16 17 S 2.69 50.72 5.14 -107.50 -0.55 50.17 16 18 O -0.95 -20.08 15.65 -57.17 -0.89 -20.97 16 19 O -0.96 -18.23 14.86 -57.17 -0.85 -19.08 16 20 C -0.67 -11.36 5.92 -39.54 -0.23 -11.59 16 21 C 0.03 0.47 9.55 -39.60 -0.38 0.10 16 22 C -0.17 -2.29 10.03 -39.51 -0.40 -2.69 16 23 C 0.16 2.15 7.30 -39.42 -0.29 1.86 16 24 F -0.13 -1.67 17.27 2.25 0.04 -1.63 16 25 C -0.17 -2.35 9.81 -39.48 -0.39 -2.73 16 26 C 0.08 1.30 6.30 -39.51 -0.25 1.05 16 27 Cl -0.03 -0.44 20.72 -51.86 -1.07 -1.51 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.05 1.15 6.39 -51.93 -0.33 0.82 16 30 H 0.05 1.29 7.01 -51.93 -0.36 0.93 16 31 H 0.09 1.44 4.94 -51.93 -0.26 1.18 16 32 H 0.11 2.09 6.50 -51.93 -0.34 1.75 16 33 H 0.08 1.23 5.82 -51.93 -0.30 0.93 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.54 6.57 -51.92 -0.34 1.20 16 40 H 0.16 2.36 7.33 -52.49 -0.38 1.97 16 41 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -28.95 359.86 -9.83 -38.78 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.80 Total: 3.21 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.17 Total: -20.91 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.44 Total: -42.28 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -2.12 Total: -46.37 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.55 Total: 50.17 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.07 Total: -1.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.95 -9.83 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069971962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.412 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds