Wall clock time and date at job start Tue Mar 31 2020 05:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46876 * 2 1 4 4 C 1.50700 * 109.46981 * 119.99670 * 2 1 3 5 5 H 1.08003 * 119.99850 * 120.00237 * 4 2 1 6 6 C 1.37879 * 120.00466 * 300.00224 * 4 2 1 7 7 N 1.31516 * 119.99491 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00196 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47308 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47168 * 119.99951 * 8 6 4 11 11 H 1.48503 * 109.46992 * 239.99732 * 8 6 4 12 12 S 1.81396 * 109.47199 * 240.00122 * 2 1 3 13 13 C 1.76192 * 103.00123 * 71.45295 * 12 2 1 14 14 C 1.38782 * 120.10751 * 6.10165 * 13 12 2 15 15 C 1.38193 * 119.99470 * 179.97438 * 14 13 12 16 16 C 1.38309 * 120.19517 * 0.02562 * 15 14 13 17 17 C 1.38243 * 120.21025 * 359.97438 * 16 15 14 18 18 C 1.38650 * 120.01072 * 0.02562 * 17 16 15 19 19 N 1.40139 * 120.10234 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99470 * 20.01925 * 19 18 17 21 21 O 1.21294 * 120.00284 * 6.02108 * 20 19 18 22 22 C 1.50709 * 119.99863 * 186.02048 * 20 19 18 23 23 S 1.80998 * 109.47206 * 180.02562 * 22 20 19 24 24 C 1.76195 * 99.99971 * 180.02562 * 23 22 20 25 25 N 1.31270 * 125.80178 * 359.69357 * 24 23 22 26 26 C 1.34364 * 109.30358 * 179.83408 * 25 24 23 27 27 C 1.34379 * 108.34747 * 0.43070 * 26 25 24 28 28 N 1.36110 * 125.80546 * 180.02562 * 24 23 22 29 29 C 1.46498 * 126.50058 * 359.97338 * 28 24 23 30 30 H 1.08998 * 109.47164 * 179.89892 * 1 2 3 31 31 H 1.09004 * 109.46607 * 299.90053 * 1 2 3 32 32 H 1.08999 * 109.47005 * 59.89741 * 1 2 3 33 33 H 0.96998 * 119.99529 * 180.02562 * 7 6 4 34 34 H 1.08005 * 120.00154 * 359.95129 * 14 13 12 35 35 H 1.07997 * 119.90294 * 179.97438 * 15 14 13 36 36 H 1.07999 * 119.89024 * 179.70308 * 16 15 14 37 37 H 1.08001 * 119.99421 * 179.97438 * 17 16 15 38 38 H 0.96996 * 120.00107 * 200.02110 * 19 18 17 39 39 H 1.09003 * 109.46569 * 300.00199 * 22 20 19 40 40 H 1.08997 * 109.46789 * 59.99783 * 22 20 19 41 41 H 1.08005 * 125.82606 * 180.14521 * 26 25 24 42 42 H 1.07998 * 126.52428 * 179.72039 * 27 26 25 43 43 H 1.09001 * 109.46780 * 90.00136 * 29 28 24 44 44 H 1.08997 * 109.47537 * 210.00195 * 29 28 24 45 45 H 1.09005 * 109.47432 * 330.00850 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1484 -2.2855 3.6039 10 1 3.1472 -0.1856 4.8161 11 1 1.1678 -1.5865 4.8166 12 16 2.1347 -0.8551 -1.4811 13 6 1.7520 0.2766 -2.7762 14 6 1.2466 1.5337 -2.4755 15 6 0.9477 2.4196 -3.4930 16 6 1.1502 2.0576 -4.8124 17 6 1.6533 0.8076 -5.1214 18 6 1.9561 -0.0881 -4.1073 19 7 2.4667 -1.3556 -4.4183 20 6 3.0387 -1.5756 -5.6186 21 8 3.2105 -0.6529 -6.3869 22 6 3.4649 -2.9683 -6.0063 23 16 4.1939 -2.9370 -7.6627 24 6 4.5899 -4.6431 -7.8549 25 7 4.3744 -5.5861 -6.9676 26 6 4.7996 -6.7627 -7.4576 27 6 5.3055 -6.5519 -8.6846 28 7 5.1770 -5.2062 -8.9461 29 6 5.5925 -4.5123 -10.1676 30 1 -0.3633 -1.0276 -0.0018 31 1 -0.3633 0.5123 0.8909 32 1 -0.3633 0.5154 -0.8891 33 1 0.7095 1.1619 3.4844 34 1 1.0865 1.8193 -1.4462 35 1 0.5541 3.3973 -3.2574 36 1 0.9105 2.7521 -5.6040 37 1 1.8097 0.5283 -6.1529 38 1 2.4084 -2.0745 -3.7697 39 1 4.2024 -3.3345 -5.2919 40 1 2.5972 -3.6278 -6.0031 41 1 4.7483 -7.7147 -6.9500 42 1 5.7323 -7.2962 -9.3405 43 1 6.6220 -4.1712 -10.0593 44 1 5.5230 -5.1947 -11.0147 45 1 4.9416 -3.6546 -10.3376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071888002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:12 Heat of formation + Delta-G solvation = 61.380190 kcal Electronic energy + Delta-G solvation = -27883.216372 eV Core-core repulsion = 23926.650979 eV Total energy + Delta-G solvation = -3956.565393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08194 -40.52131 -38.17908 -34.86492 -34.38196 -34.15082 -31.26496 -30.99895 -29.98807 -29.91913 -28.46608 -27.38434 -25.40524 -23.12466 -22.57841 -22.05874 -21.71016 -21.27110 -20.36756 -18.42294 -17.89299 -17.15920 -16.73722 -16.26108 -16.15221 -16.05674 -15.75578 -15.24800 -14.72895 -14.54937 -14.45854 -14.11050 -13.96224 -13.73665 -13.61716 -13.46249 -13.24548 -13.18266 -13.10794 -12.65640 -12.58173 -11.99413 -11.79749 -11.47625 -11.09522 -11.08122 -10.97015 -10.62907 -10.54763 -10.48364 -10.42515 -10.11896 -10.04375 -9.75240 -9.68649 -9.47320 -9.16689 -8.99677 -8.55503 -8.01666 -7.70508 -6.60602 -6.26165 -4.35265 0.78927 1.44165 1.55474 1.68890 1.70643 2.37884 2.47848 2.51033 2.73431 3.02372 3.18762 3.27098 3.31929 3.56602 4.09692 4.25804 4.26527 4.35875 4.47534 4.65344 4.76977 4.92015 4.98661 5.06310 5.10518 5.26904 5.27902 5.33570 5.56213 5.75604 5.76415 5.80513 6.17800 6.35598 6.41352 6.51391 6.52980 6.56071 6.67989 6.69344 6.75063 6.86108 7.25086 7.29477 7.34586 7.54195 7.55910 7.72871 7.90993 7.96161 8.63995 9.29325 10.79902 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.002040 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.557790 B =13719.236233 C =15982.982377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.510 4.510 5 H 0.068 0.932 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.176 6.176 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.124 4.124 18 C 0.147 3.853 19 N -0.649 5.649 20 C 0.532 3.468 21 O -0.512 6.512 22 C -0.138 4.138 23 S 0.058 5.942 24 C 0.174 3.826 25 N -0.490 5.490 26 C -0.017 4.017 27 C -0.050 4.050 28 N -0.449 5.449 29 C 0.070 3.930 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.020 0.980 33 H 0.266 0.734 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.418 0.582 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.174 0.826 42 H 0.178 0.822 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -8.562 -23.754 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.550 4.550 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.734 3.266 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.072 5.928 13 C -0.206 4.206 14 C -0.138 4.138 15 C -0.139 4.139 16 C -0.143 4.143 17 C -0.145 4.145 18 C 0.047 3.953 19 N -0.293 5.293 20 C 0.318 3.682 21 O -0.388 6.388 22 C -0.290 4.290 23 S 0.287 5.713 24 C -0.197 4.197 25 N -0.213 5.213 26 C -0.166 4.166 27 C -0.185 4.185 28 N -0.135 5.135 29 C -0.072 4.072 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.256 0.744 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.191 0.809 42 H 0.195 0.805 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.745 -7.900 -24.216 26.112 hybrid contribution -0.100 -0.936 1.368 1.661 sum 5.645 -8.836 -22.848 25.139 Atomic orbital electron populations 1.22119 0.96185 1.00697 1.01210 1.21115 0.95651 0.97345 0.88498 0.92933 1.20665 1.32532 1.13265 0.88544 0.91408 1.24895 0.94640 0.94958 0.98903 1.69867 1.35857 1.22469 1.24100 0.86289 0.78717 0.79641 0.81990 1.19465 1.20708 1.20697 1.85028 1.76336 1.29381 1.02100 1.21719 1.04890 0.98857 0.95169 1.21289 0.99707 0.92154 1.00616 1.21054 1.00828 0.99382 0.92684 1.20955 1.00808 0.96322 0.96261 1.21404 0.99827 0.93666 0.99650 1.17230 1.00567 0.85756 0.91787 1.43351 1.56913 1.12305 1.16696 1.19701 0.77410 0.89324 0.81791 1.90663 1.53568 1.43706 1.50883 1.23587 1.07071 0.98848 0.99483 1.85904 1.75320 0.91636 1.18446 1.25552 1.05057 1.01407 0.87639 1.70793 1.23355 0.98913 1.28196 1.22331 1.03323 0.97005 0.93986 1.22849 1.10154 0.84629 1.00838 1.45422 1.45996 1.07582 1.14455 1.22127 1.02070 0.98501 0.84528 0.94100 0.88647 0.96134 0.92427 0.84407 0.86159 0.86144 0.83225 0.74411 0.85264 0.85301 0.80909 0.80463 0.90029 0.89171 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.58 37.16 0.32 -2.94 16 2 C 0.10 2.41 1.97 -27.88 -0.05 2.36 16 3 H 0.05 1.34 6.74 -51.92 -0.35 0.99 16 4 C -0.51 -13.36 8.58 -34.44 -0.30 -13.66 16 5 H 0.07 1.79 7.71 -52.48 -0.40 1.39 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -23.68 11.32 55.43 0.63 -23.05 16 8 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 S -0.18 -3.61 19.86 -107.50 -2.14 -5.75 16 13 C -0.09 -1.71 6.05 -38.90 -0.24 -1.95 16 14 C -0.11 -2.07 8.12 -39.40 -0.32 -2.39 16 15 C -0.12 -1.85 10.04 -39.57 -0.40 -2.25 16 16 C -0.12 -1.79 10.04 -39.55 -0.40 -2.19 16 17 C -0.12 -1.99 8.77 -39.43 -0.35 -2.34 16 18 C 0.15 2.51 6.51 -83.43 -0.54 1.97 16 19 N -0.65 -9.48 5.23 -9.70 -0.05 -9.53 16 20 C 0.53 7.22 7.69 -10.98 -0.08 7.14 16 21 O -0.51 -8.05 12.80 5.55 0.07 -7.97 16 22 C -0.14 -1.51 5.68 36.01 0.20 -1.31 16 23 S 0.06 0.63 20.77 -107.50 -2.23 -1.60 16 24 C 0.17 1.94 7.96 -88.75 -0.71 1.23 16 25 N -0.49 -6.02 10.60 -13.45 -0.14 -6.17 16 26 C -0.02 -0.16 11.84 -17.81 -0.21 -0.37 16 27 C -0.05 -0.39 11.60 -16.28 -0.19 -0.58 16 28 N -0.45 -3.90 3.20 -124.33 -0.40 -4.30 16 29 C 0.07 0.34 11.00 59.85 0.66 1.00 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.02 0.42 6.25 -51.93 -0.32 0.09 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.14 2.69 4.96 -52.48 -0.26 2.43 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.15 2.36 5.46 -52.49 -0.29 2.07 16 38 H 0.42 5.67 7.52 -40.82 -0.31 5.37 16 39 H 0.13 1.34 8.14 -51.91 -0.42 0.92 16 40 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 41 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 42 H 0.18 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.09 0.43 7.74 -51.93 -0.40 0.03 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -31.28 398.09 -11.57 -42.84 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.59 Total: 8.67 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.69 Total: -14.53 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.04 Total: -43.04 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -4.37 Total: -7.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.28 -11.57 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071888002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.222 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds