Wall clock time and date at job start Tue Mar 31 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46873 * 2 1 4 4 C 1.50696 * 109.47252 * 240.00208 * 2 1 3 5 5 H 1.07996 * 120.00100 * 244.10827 * 4 2 1 6 6 C 1.37878 * 120.00036 * 64.10291 * 4 2 1 7 7 N 1.31515 * 120.00166 * 195.10225 * 6 4 2 8 8 Si 1.86801 * 120.00048 * 15.11015 * 6 4 2 9 9 H 1.48502 * 109.47516 * 95.80304 * 8 6 4 10 10 H 1.48500 * 109.47309 * 215.80597 * 8 6 4 11 11 H 1.48506 * 109.46992 * 335.80637 * 8 6 4 12 12 S 1.81396 * 109.47259 * 119.99911 * 2 1 3 13 13 C 1.76200 * 103.00261 * 289.39032 * 12 2 1 14 14 C 1.38790 * 120.10053 * 354.34204 * 13 12 2 15 15 C 1.38193 * 119.98308 * 179.97438 * 14 13 12 16 16 C 1.38303 * 120.20571 * 0.02562 * 15 14 13 17 17 C 1.38250 * 120.20749 * 359.97438 * 16 15 14 18 18 C 1.38653 * 120.00782 * 0.29748 * 17 16 15 19 19 N 1.40137 * 120.09705 * 179.72800 * 18 17 16 20 20 C 1.34769 * 120.00545 * 23.61720 * 19 18 17 21 21 O 1.21299 * 119.99921 * 5.36751 * 20 19 18 22 22 C 1.50703 * 120.00580 * 185.36439 * 20 19 18 23 23 S 1.80996 * 109.47411 * 180.02562 * 22 20 19 24 24 C 1.76199 * 100.00189 * 180.02562 * 23 22 20 25 25 N 1.31275 * 125.79883 * 359.69053 * 24 23 22 26 26 C 1.34361 * 109.30201 * 179.83654 * 25 24 23 27 27 C 1.34384 * 108.34818 * 0.43210 * 26 25 24 28 28 N 1.36105 * 125.80348 * 180.02562 * 24 23 22 29 29 C 1.46496 * 126.50630 * 359.96770 * 28 24 23 30 30 H 1.09001 * 109.47005 * 305.38966 * 1 2 3 31 31 H 1.09002 * 109.47189 * 65.39073 * 1 2 3 32 32 H 1.09000 * 109.46772 * 185.39086 * 1 2 3 33 33 H 0.97003 * 120.00268 * 180.02562 * 7 6 4 34 34 H 1.07995 * 120.00799 * 359.96580 * 14 13 12 35 35 H 1.08010 * 119.89819 * 180.02562 * 15 14 13 36 36 H 1.07995 * 119.89581 * 180.02562 * 16 15 14 37 37 H 1.08000 * 119.99482 * 180.02562 * 17 16 15 38 38 H 0.97003 * 119.99903 * 203.61845 * 19 18 17 39 39 H 1.08996 * 109.46792 * 300.00319 * 22 20 19 40 40 H 1.09000 * 109.46487 * 60.00036 * 22 20 19 41 41 H 1.08002 * 125.82786 * 180.14925 * 26 25 24 42 42 H 1.07999 * 126.52890 * 179.71967 * 27 26 25 43 43 H 1.09001 * 109.46962 * 90.00541 * 29 28 24 44 44 H 1.08991 * 109.47890 * 210.00745 * 29 28 24 45 45 H 1.09007 * 109.46794 * 330.01109 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5974 -1.6255 -1.1328 6 6 1.7705 -0.1920 -2.4809 7 7 1.9378 -0.9386 -3.5506 8 14 1.1783 1.5710 -2.6559 9 1 2.3363 2.4564 -2.9395 10 1 0.2039 1.6574 -3.7732 11 1 0.5240 2.0010 -1.3941 12 16 2.1347 -0.8551 1.4811 13 6 1.7295 0.2655 2.7790 14 6 1.2024 1.5144 2.4811 15 6 0.8850 2.3912 3.5010 16 6 1.0913 2.0287 4.8197 17 6 1.6158 0.7867 5.1257 18 6 1.9427 -0.0976 4.1091 19 7 2.4799 -1.3548 4.4170 20 6 2.2532 -1.9070 5.6253 21 8 1.5056 -1.3627 6.4103 22 6 2.9284 -3.2008 6.0013 23 16 2.4252 -3.6806 7.6724 24 6 3.3359 -5.1787 7.8480 25 7 4.1260 -5.7076 6.9428 26 6 4.6537 -6.8455 7.4243 27 6 4.1746 -7.0426 8.6642 28 7 3.3348 -5.9875 8.9426 29 6 2.5835 -5.7754 10.1822 30 1 -0.3633 0.5952 0.8378 31 1 -0.3634 0.4280 -0.9343 32 1 -0.3633 -1.0231 0.0966 33 1 1.7539 -0.5738 -4.4304 34 1 1.0406 1.8010 1.4526 35 1 0.4745 3.3626 3.2677 36 1 0.8410 2.7176 5.6128 37 1 1.7751 0.5070 6.1567 38 1 3.0149 -1.8276 3.7604 39 1 2.6380 -3.9802 5.2969 40 1 4.0099 -3.0682 5.9711 41 1 5.3418 -7.4939 6.9020 42 1 4.4039 -7.8712 9.3178 43 1 1.6054 -6.2494 10.0999 44 1 3.1299 -6.2128 11.0177 45 1 2.4560 -4.7061 10.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071888003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:15 Heat of formation + Delta-G solvation = 67.120270 kcal Electronic energy + Delta-G solvation = -27972.811126 eV Core-core repulsion = 24016.494642 eV Total energy + Delta-G solvation = -3956.316485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08541 -40.57451 -38.29523 -34.95191 -34.38742 -34.17245 -31.61902 -31.15759 -30.45619 -29.93636 -28.55822 -27.38980 -25.33972 -23.23684 -22.70057 -22.08957 -21.73122 -21.29492 -20.43184 -18.45342 -17.95659 -17.21720 -16.92826 -16.60279 -16.24327 -16.08866 -15.80832 -15.29575 -14.77118 -14.59995 -14.44339 -14.14311 -14.06891 -13.81201 -13.67997 -13.59533 -13.35568 -13.22356 -13.11918 -12.84906 -12.70019 -12.26814 -12.17668 -11.78220 -11.42686 -11.14957 -10.98917 -10.67123 -10.56550 -10.46301 -10.41199 -10.04815 -9.95561 -9.78650 -9.69373 -9.69163 -9.30838 -9.15146 -8.66075 -8.14807 -7.71763 -6.73522 -6.31970 -4.31853 0.77257 1.33434 1.55020 1.55291 1.68745 2.21497 2.40480 2.50312 2.73196 2.96025 3.12805 3.21673 3.25555 3.33982 3.96649 4.21678 4.25045 4.31528 4.46520 4.64751 4.74746 4.91508 4.97736 4.98528 5.08031 5.13406 5.21267 5.26941 5.44013 5.65009 5.66607 5.75609 6.02017 6.10993 6.25203 6.28732 6.32897 6.35454 6.41168 6.52561 6.55450 6.68403 6.72656 7.06427 7.14423 7.25390 7.34267 7.53793 7.85200 8.16252 8.70898 9.26486 10.79504 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.002028 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.575424 B =13801.106062 C =15629.343625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.084 0.916 6 C 0.089 3.911 7 N -0.879 5.879 8 Si 0.865 3.135 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.255 1.255 12 S -0.133 6.133 13 C -0.098 4.098 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.116 4.116 18 C 0.151 3.849 19 N -0.651 5.651 20 C 0.533 3.467 21 O -0.511 6.511 22 C -0.139 4.139 23 S 0.058 5.942 24 C 0.173 3.827 25 N -0.490 5.490 26 C -0.016 4.016 27 C -0.050 4.050 28 N -0.449 5.449 29 C 0.070 3.930 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.269 0.731 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.418 0.582 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.174 0.826 42 H 0.178 0.822 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -5.647 26.545 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 H 0.066 0.934 4 C -0.558 4.558 5 H 0.102 0.898 6 C -0.117 4.117 7 N -0.514 5.514 8 Si 0.691 3.309 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.179 1.179 12 S 0.115 5.885 13 C -0.214 4.214 14 C -0.143 4.143 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.138 4.138 18 C 0.050 3.950 19 N -0.295 5.295 20 C 0.319 3.681 21 O -0.388 6.388 22 C -0.290 4.290 23 S 0.287 5.713 24 C -0.197 4.197 25 N -0.212 5.212 26 C -0.166 4.166 27 C -0.184 4.184 28 N -0.135 5.135 29 C -0.072 4.072 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.256 0.744 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.191 0.809 42 H 0.195 0.805 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.195 -5.590 26.953 27.552 hybrid contribution 0.166 0.682 -0.874 1.121 sum 1.362 -4.908 26.079 26.571 Atomic orbital electron populations 1.22493 0.96477 1.01680 1.00066 1.21327 0.95266 0.97666 0.92332 0.93420 1.20292 1.37318 1.11152 0.87013 0.89779 1.24799 0.94247 0.97444 0.95230 1.69921 1.47351 1.35589 0.98584 0.87153 0.79224 0.85835 0.78728 1.20209 1.20747 1.17895 1.85130 1.75115 1.28647 0.99616 1.21853 1.04236 0.99494 0.95803 1.21218 1.00238 0.92562 1.00297 1.21039 1.00721 0.99349 0.92673 1.20952 1.00860 0.96145 0.96256 1.21276 1.00339 0.92719 0.99444 1.17177 1.00936 0.85161 0.91740 1.43341 1.51911 1.18303 1.15950 1.19711 0.81271 0.85234 0.81871 1.90698 1.35505 1.62528 1.50035 1.23580 1.06453 0.99532 0.99453 1.85896 1.54436 1.13955 1.17055 1.25538 1.05604 1.01255 0.87299 1.70794 1.11867 1.10449 1.28104 1.22335 1.03838 0.96590 0.93840 1.22857 0.99982 0.95128 1.00483 1.45420 1.35768 1.18586 1.13678 1.22125 0.96823 1.04322 0.83953 0.94724 0.92359 0.92089 0.92087 0.84895 0.86140 0.86011 0.83601 0.74415 0.85167 0.85269 0.80882 0.80451 0.90026 0.89167 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.07 37.16 0.30 -2.80 16 2 C 0.06 1.41 1.52 -27.88 -0.04 1.36 16 3 H 0.05 1.07 5.46 -51.92 -0.28 0.79 16 4 C -0.52 -13.82 9.02 -34.44 -0.31 -14.14 16 5 H 0.08 2.46 7.96 -52.49 -0.42 2.04 16 6 C 0.09 2.41 5.33 -17.82 -0.10 2.31 16 7 N -0.88 -25.41 13.96 55.43 0.77 -24.64 16 8 Si 0.86 19.86 25.73 -169.99 -4.37 15.49 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.25 -5.42 5.48 56.52 0.31 -5.11 16 12 S -0.13 -2.61 19.92 -107.50 -2.14 -4.76 16 13 C -0.10 -1.74 6.07 -38.90 -0.24 -1.97 16 14 C -0.12 -2.00 8.13 -39.39 -0.32 -2.32 16 15 C -0.12 -1.68 10.04 -39.57 -0.40 -2.08 16 16 C -0.12 -1.64 10.04 -39.55 -0.40 -2.04 16 17 C -0.12 -1.75 8.73 -39.42 -0.34 -2.10 16 18 C 0.15 2.42 6.46 -83.43 -0.54 1.88 16 19 N -0.65 -9.03 5.18 -9.71 -0.05 -9.08 16 20 C 0.53 6.96 7.67 -10.99 -0.08 6.88 16 21 O -0.51 -7.80 12.96 5.54 0.07 -7.73 16 22 C -0.14 -1.47 5.68 36.01 0.20 -1.26 16 23 S 0.06 0.62 20.77 -107.50 -2.23 -1.62 16 24 C 0.17 1.91 7.96 -88.75 -0.71 1.21 16 25 N -0.49 -5.97 10.60 -13.45 -0.14 -6.11 16 26 C -0.02 -0.16 11.84 -17.81 -0.21 -0.37 16 27 C -0.05 -0.38 11.60 -16.28 -0.19 -0.57 16 28 N -0.45 -3.86 3.20 -124.33 -0.40 -4.26 16 29 C 0.07 0.33 11.01 59.84 0.66 0.99 16 30 H 0.03 0.65 6.07 -51.93 -0.32 0.33 16 31 H 0.06 1.24 4.93 -51.93 -0.26 0.99 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.13 2.34 4.84 -52.49 -0.25 2.09 16 35 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.15 2.16 5.70 -52.49 -0.30 1.86 16 38 H 0.42 5.35 7.62 -40.82 -0.31 5.04 16 39 H 0.13 1.32 8.14 -51.92 -0.42 0.90 16 40 H 0.13 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.09 0.42 7.74 -51.92 -0.40 0.02 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -32.73 392.76 -10.86 -43.59 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.57 Total: 8.21 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.71 Total: -15.03 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.18 Total: -44.08 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.07 Total: -7.73 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.37 Total: 15.49 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -4.37 Total: -6.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.73 -10.86 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071888003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.708 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds