Wall clock time and date at job start Tue Mar 31 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48492 * 109.47166 * 240.00305 * 3 2 1 5 5 H 1.48494 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46673 * 120.00233 * 3 2 1 7 7 C 1.37881 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99228 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47072 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54379 * 68.37468 * 11 10 9 13 13 O 1.42101 * 110.54002 * 291.62662 * 11 10 9 14 14 N 1.65601 * 104.45004 * 179.97438 * 11 10 9 15 15 C 1.46495 * 119.99698 * 89.99914 * 14 11 10 16 16 C 1.50700 * 109.47359 * 265.00000 * 15 14 11 17 17 C 1.38235 * 120.00255 * 89.99789 * 16 15 14 18 18 C 1.38234 * 120.00220 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.50693 * 120.00207 * 179.72405 * 19 18 17 21 21 F 1.39904 * 109.47272 * 89.99432 * 20 19 18 22 22 F 1.39901 * 109.47232 * 209.99686 * 20 19 18 23 23 F 1.39894 * 109.47054 * 329.99662 * 20 19 18 24 24 C 1.38238 * 119.99747 * 359.50225 * 19 18 17 25 25 C 1.38234 * 120.00056 * 0.47382 * 24 19 18 26 26 C 1.46489 * 119.99904 * 269.99765 * 14 11 10 27 27 C 1.53005 * 117.50063 * 188.61990 * 26 14 11 28 28 C 1.52996 * 60.00195 * 252.51441 * 27 26 14 29 29 H 0.96993 * 120.00418 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47268 * 60.00646 * 9 7 2 31 31 H 1.08996 * 109.47702 * 299.99950 * 9 7 2 32 32 H 1.08998 * 109.47158 * 60.00194 * 10 9 7 33 33 H 1.09000 * 109.46948 * 300.00001 * 10 9 7 34 34 H 1.09005 * 109.47015 * 144.99933 * 15 14 11 35 35 H 1.09002 * 109.47841 * 24.99815 * 15 14 11 36 36 H 1.07999 * 119.99770 * 0.02562 * 17 16 15 37 37 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 38 38 H 1.08004 * 120.00382 * 180.25932 * 24 19 18 39 39 H 1.08001 * 120.00294 * 179.78846 * 25 24 19 40 40 H 1.09004 * 115.55414 * 334.33343 * 26 14 11 41 41 H 1.09006 * 117.49271 * 0.02562 * 27 26 14 42 42 H 1.09004 * 117.49917 * 145.01902 * 27 26 14 43 43 H 1.09005 * 117.49729 * 252.51032 * 28 27 26 44 44 H 1.08996 * 117.52278 * 107.48228 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 16 1.3386 -5.2331 -0.0013 12 8 0.6650 -5.4194 -1.2386 13 8 0.6641 -5.4200 1.2354 14 7 2.5208 -6.3927 -0.0020 15 6 3.0437 -6.9062 1.2665 16 6 4.2907 -6.1469 1.6400 17 6 4.1985 -5.0012 2.4079 18 6 5.3424 -4.3051 2.7510 19 6 6.5781 -4.7513 2.3211 20 6 7.8246 -3.9889 2.6898 21 9 8.3296 -4.4778 3.8995 22 9 8.7843 -4.1500 1.6847 23 9 7.5171 -2.6312 2.8277 24 6 6.6708 -5.8994 1.5568 25 6 5.5269 -6.5958 1.2142 26 6 3.0436 -6.9049 -1.2709 27 6 3.9829 -8.1113 -1.2125 28 6 4.5383 -6.7246 -1.5434 29 1 -0.4850 0.8399 0.0004 30 1 0.6242 -2.5568 -0.8904 31 1 0.6248 -2.5572 0.8896 32 1 2.8721 -3.6043 0.8894 33 1 2.8721 -3.6043 -0.8905 34 1 3.2811 -7.9647 1.1597 35 1 2.2936 -6.7790 2.0470 36 1 3.2327 -4.6505 2.7406 37 1 5.2703 -3.4102 3.3513 38 1 7.6366 -6.2504 1.2244 39 1 5.5990 -7.4910 0.6142 40 1 2.3650 -6.8357 -2.1212 41 1 4.2115 -8.5240 -0.2298 42 1 3.9223 -8.8361 -2.0244 43 1 4.8432 -6.5371 -2.5730 44 1 5.1326 -6.2245 -0.7787 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071897409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:27 Heat of formation + Delta-G solvation = -165.973038 kcal Electronic energy + Delta-G solvation = -33676.962665 eV Core-core repulsion = 28693.636133 eV Total energy + Delta-G solvation = -4983.326532 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.31170 -47.82287 -47.77684 -40.21055 -38.08420 -36.79013 -35.56623 -34.15931 -33.93075 -31.99060 -31.42731 -31.09400 -27.66705 -25.65196 -24.76075 -23.30839 -22.59009 -22.22792 -21.66637 -20.87242 -18.84675 -18.70565 -18.61931 -18.49463 -17.81155 -16.70283 -16.51152 -16.09601 -15.43443 -15.39399 -15.29970 -14.79693 -14.68748 -14.59500 -14.56700 -14.50782 -14.23033 -14.05813 -13.92580 -13.73193 -13.58405 -13.37681 -13.17840 -12.69866 -12.49047 -12.42761 -11.95816 -11.85287 -11.79442 -11.72142 -11.65684 -11.50924 -11.16718 -11.12100 -11.07214 -10.99721 -10.56200 -10.45665 -10.40783 -9.78697 -9.37531 -9.32714 -9.21298 -8.75408 -8.51550 -6.14068 -4.19649 0.48424 0.72938 0.99937 2.48645 2.76126 3.26207 3.26705 3.31699 3.33689 3.53400 3.64106 3.84824 4.16592 4.25193 4.33719 4.36131 4.40833 4.52680 4.58843 4.64361 4.78145 4.82120 4.85984 4.99723 5.08889 5.21224 5.30249 5.35497 5.41928 5.54954 5.60756 5.66209 5.71010 5.78486 5.85823 5.92174 5.95159 6.10306 6.19743 6.44426 6.47218 6.53225 7.26020 7.31672 7.78963 8.15250 8.83544 9.45402 10.96869 Molecular weight = 377.11amu Principal moments of inertia in cm(-1) A = 0.006392 B = 0.004424 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4379.583303 B = 6327.242361 C = 9603.918519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.588 4.588 11 S 2.587 3.413 12 O -0.960 6.960 13 O -0.961 6.961 14 N -0.972 5.972 15 C 0.144 3.856 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.061 4.061 19 C -0.181 4.181 20 C 0.508 3.492 21 F -0.179 7.179 22 F -0.178 7.178 23 F -0.174 7.174 24 C -0.074 4.074 25 C -0.110 4.110 26 C 0.083 3.917 27 C -0.185 4.185 28 C -0.209 4.209 29 H 0.266 0.734 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.623 -16.786 3.098 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.721 4.721 11 S 2.687 3.313 12 O -0.950 6.950 13 O -0.952 6.952 14 N -0.803 5.803 15 C 0.019 3.981 16 C -0.080 4.080 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.183 4.183 20 C 0.454 3.546 21 F -0.160 7.160 22 F -0.160 7.160 23 F -0.155 7.155 24 C -0.092 4.092 25 C -0.129 4.129 26 C -0.024 4.024 27 C -0.223 4.223 28 C -0.248 4.248 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.496 -16.883 3.113 21.837 hybrid contribution 1.452 1.492 0.041 2.082 sum 14.948 -15.391 3.153 21.685 Atomic orbital electron populations 1.69937 1.06099 1.27330 1.49491 1.25043 0.94935 0.99454 0.94859 0.86563 0.79541 0.82607 0.78800 1.20062 1.21050 1.20021 1.20933 0.93004 0.89636 1.52263 0.92098 1.18954 0.92585 0.90535 0.98790 1.30558 1.13614 1.17651 1.10325 1.05889 0.74713 0.76495 0.74199 1.93528 1.71273 1.85105 1.45136 1.93529 1.71085 1.85240 1.45317 1.57424 1.57727 1.56131 1.09003 1.20408 0.93252 0.98345 0.86141 1.20658 0.95960 0.95668 0.95744 1.21305 0.99326 0.94465 0.97920 1.21019 0.90696 0.99133 0.97110 1.19993 0.92609 0.99410 1.06259 1.18326 0.83967 0.77773 0.74559 1.93220 1.88761 1.87717 1.46318 1.93185 1.66553 1.95346 1.60893 1.93226 1.92923 1.33728 1.95606 1.20902 0.99721 0.93088 0.95502 1.21138 0.91243 1.00809 0.99670 1.21568 0.92041 1.01221 0.87592 1.23311 1.03923 0.91678 1.03418 1.23833 0.97744 0.99444 1.03746 0.92461 0.94912 0.94928 0.86263 0.86052 0.88550 0.87001 0.83933 0.84143 0.84691 0.84264 0.83795 0.88185 0.87906 0.88070 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.09 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.59 -11.08 6.12 37.16 0.23 -10.85 16 11 S 2.59 45.14 5.43 -107.50 -0.58 44.56 16 12 O -0.96 -19.39 16.75 -57.54 -0.96 -20.35 16 13 O -0.96 -18.61 16.53 -57.54 -0.95 -19.56 16 14 N -0.97 -12.27 3.05 -108.57 -0.33 -12.60 16 15 C 0.14 1.47 5.32 -5.20 -0.03 1.44 16 16 C -0.08 -0.79 5.09 -104.62 -0.53 -1.32 16 17 C -0.11 -1.27 8.00 -39.58 -0.32 -1.59 16 18 C -0.06 -0.70 9.40 -39.58 -0.37 -1.07 16 19 C -0.18 -1.95 5.45 -104.63 -0.57 -2.52 16 20 C 0.51 5.67 3.36 36.00 0.12 5.79 16 21 F -0.18 -1.99 17.30 2.25 0.04 -1.95 16 22 F -0.18 -1.98 16.47 2.25 0.04 -1.94 16 23 F -0.17 -2.18 16.46 2.25 0.04 -2.15 16 24 C -0.07 -0.67 9.40 -39.58 -0.37 -1.04 16 25 C -0.11 -0.94 6.55 -39.58 -0.26 -1.20 16 26 C 0.08 0.90 6.36 -67.93 -0.43 0.47 16 27 C -0.18 -1.40 9.19 -26.73 -0.25 -1.65 16 28 C -0.21 -1.87 9.50 -26.73 -0.25 -2.12 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.12 2.03 5.88 -51.93 -0.31 1.72 16 33 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 34 H 0.10 0.73 6.01 -51.93 -0.31 0.41 16 35 H 0.11 1.20 6.76 -51.93 -0.35 0.85 16 36 H 0.14 1.64 7.69 -52.49 -0.40 1.24 16 37 H 0.14 1.51 7.60 -52.49 -0.40 1.11 16 38 H 0.14 0.97 7.61 -52.48 -0.40 0.58 16 39 H 0.14 0.90 5.35 -52.49 -0.28 0.61 16 40 H 0.14 1.67 7.28 -51.93 -0.38 1.29 16 41 H 0.10 0.64 4.80 -51.93 -0.25 0.39 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.11 1.02 4.51 -51.93 -0.23 0.78 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -33.39 379.70 -9.83 -43.22 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.97 Total: 2.24 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -3.58 Total: -27.88 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.41 Total: -38.02 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.92 Total: -39.91 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.14 SS G_CDS: -0.58 Total: 44.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.39 -9.83 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.751 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds