Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48492 * 109.47166 * 240.00305 * 3 2 1 5 5 H 1.48494 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46673 * 120.00233 * 3 2 1 7 7 C 1.37881 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99228 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47072 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54379 * 68.37468 * 11 10 9 13 13 O 1.42101 * 110.54002 * 291.62662 * 11 10 9 14 14 N 1.65601 * 104.45004 * 179.97438 * 11 10 9 15 15 C 1.46495 * 119.99698 * 89.99914 * 14 11 10 16 16 C 1.50700 * 109.47359 * 265.00000 * 15 14 11 17 17 C 1.38235 * 120.00255 * 89.99789 * 16 15 14 18 18 C 1.38234 * 120.00220 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.50693 * 120.00207 * 179.72405 * 19 18 17 21 21 F 1.39904 * 109.47272 * 89.99432 * 20 19 18 22 22 F 1.39901 * 109.47232 * 209.99686 * 20 19 18 23 23 F 1.39894 * 109.47054 * 329.99662 * 20 19 18 24 24 C 1.38238 * 119.99747 * 359.50225 * 19 18 17 25 25 C 1.38234 * 120.00056 * 0.47382 * 24 19 18 26 26 C 1.46489 * 119.99904 * 269.99765 * 14 11 10 27 27 C 1.53005 * 117.50063 * 188.61990 * 26 14 11 28 28 C 1.52996 * 60.00195 * 252.51441 * 27 26 14 29 29 H 0.96993 * 120.00418 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47268 * 60.00646 * 9 7 2 31 31 H 1.08996 * 109.47702 * 299.99950 * 9 7 2 32 32 H 1.08998 * 109.47158 * 60.00194 * 10 9 7 33 33 H 1.09000 * 109.46948 * 300.00001 * 10 9 7 34 34 H 1.09005 * 109.47015 * 144.99933 * 15 14 11 35 35 H 1.09002 * 109.47841 * 24.99815 * 15 14 11 36 36 H 1.07999 * 119.99770 * 0.02562 * 17 16 15 37 37 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 38 38 H 1.08004 * 120.00382 * 180.25932 * 24 19 18 39 39 H 1.08001 * 120.00294 * 179.78846 * 25 24 19 40 40 H 1.09004 * 115.55414 * 334.33343 * 26 14 11 41 41 H 1.09006 * 117.49271 * 0.02562 * 27 26 14 42 42 H 1.09004 * 117.49917 * 145.01902 * 27 26 14 43 43 H 1.09005 * 117.49729 * 252.51032 * 28 27 26 44 44 H 1.08996 * 117.52278 * 107.48228 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 16 1.3386 -5.2331 -0.0013 12 8 0.6650 -5.4194 -1.2386 13 8 0.6641 -5.4200 1.2354 14 7 2.5208 -6.3927 -0.0020 15 6 3.0437 -6.9062 1.2665 16 6 4.2907 -6.1469 1.6400 17 6 4.1985 -5.0012 2.4079 18 6 5.3424 -4.3051 2.7510 19 6 6.5781 -4.7513 2.3211 20 6 7.8246 -3.9889 2.6898 21 9 8.3296 -4.4778 3.8995 22 9 8.7843 -4.1500 1.6847 23 9 7.5171 -2.6312 2.8277 24 6 6.6708 -5.8994 1.5568 25 6 5.5269 -6.5958 1.2142 26 6 3.0436 -6.9049 -1.2709 27 6 3.9829 -8.1113 -1.2125 28 6 4.5383 -6.7246 -1.5434 29 1 -0.4850 0.8399 0.0004 30 1 0.6242 -2.5568 -0.8904 31 1 0.6248 -2.5572 0.8896 32 1 2.8721 -3.6043 0.8894 33 1 2.8721 -3.6043 -0.8905 34 1 3.2811 -7.9647 1.1597 35 1 2.2936 -6.7790 2.0470 36 1 3.2327 -4.6505 2.7406 37 1 5.2703 -3.4102 3.3513 38 1 7.6366 -6.2504 1.2244 39 1 5.5990 -7.4910 0.6142 40 1 2.3650 -6.8357 -2.1212 41 1 4.2115 -8.5240 -0.2298 42 1 3.9223 -8.8361 -2.0244 43 1 4.8432 -6.5371 -2.5730 44 1 5.1326 -6.2245 -0.7787 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071897409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -186.141105 kcal Electronic energy + Delta-G solvation = -33677.837218 eV Core-core repulsion = 28693.636133 eV Total energy + Delta-G solvation = -4984.201085 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -51.20031 -48.72116 -48.66638 -40.99989 -38.89794 -38.27574 -37.08596 -35.92154 -34.98259 -33.17974 -32.84761 -32.09317 -28.53841 -27.60860 -25.62847 -24.10163 -23.71566 -23.14376 -22.87988 -21.90713 -19.93351 -19.56815 -19.50474 -19.46549 -19.19538 -18.44246 -17.62337 -17.25831 -16.65724 -16.60916 -16.43502 -16.22285 -15.69226 -15.57089 -15.47933 -15.40990 -15.17588 -15.12172 -14.91159 -14.82697 -14.53177 -14.50206 -14.25981 -14.05741 -13.76414 -13.64025 -13.27958 -13.25964 -13.13999 -12.94683 -12.84557 -12.80253 -12.67987 -12.28549 -12.23825 -12.18934 -11.98914 -11.88629 -11.75209 -11.31387 -11.11934 -10.65510 -10.16692 -10.00711 -9.73303 -8.27330 -6.40838 -0.81402 -0.18935 0.23088 1.38692 1.41263 1.49468 1.60507 1.62911 2.35919 2.42874 2.68498 2.74034 2.94641 2.98853 3.05979 3.11227 3.38891 3.61775 3.66584 3.79635 3.84634 3.90190 4.04034 4.08279 4.14082 4.20027 4.25685 4.30543 4.57781 4.58793 4.69035 4.71580 4.88945 4.95086 5.10259 5.12557 5.15201 5.23956 5.24163 5.27903 5.34748 5.41013 5.62506 5.66563 5.72531 6.05102 6.71682 7.29138 8.84633 Molecular weight = 377.11amu Principal moments of inertia in cm(-1) A = 0.006392 B = 0.004424 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4379.583303 B = 6327.242361 C = 9603.918519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.590 4.590 11 S 2.611 3.389 12 O -0.991 6.991 13 O -0.985 6.985 14 N -0.958 5.958 15 C 0.137 3.863 16 C -0.080 4.080 17 C -0.130 4.130 18 C -0.077 4.077 19 C -0.189 4.189 20 C 0.509 3.491 21 F -0.179 7.179 22 F -0.176 7.176 23 F -0.185 7.185 24 C -0.069 4.069 25 C -0.097 4.097 26 C 0.042 3.958 27 C -0.152 4.152 28 C -0.205 4.205 29 H 0.268 0.732 30 H 0.005 0.995 31 H 0.008 0.992 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.171 0.829 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.591 -18.870 2.570 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.013 4.013 10 C -0.722 4.722 11 S 2.710 3.290 12 O -0.981 6.981 13 O -0.975 6.975 14 N -0.792 5.792 15 C 0.013 3.987 16 C -0.082 4.082 17 C -0.149 4.149 18 C -0.095 4.095 19 C -0.191 4.191 20 C 0.455 3.545 21 F -0.161 7.161 22 F -0.158 7.158 23 F -0.167 7.167 24 C -0.087 4.087 25 C -0.115 4.115 26 C -0.064 4.064 27 C -0.190 4.190 28 C -0.244 4.244 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.026 0.974 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.121 0.879 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.188 0.812 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.127 0.873 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.475 -18.949 2.586 25.242 hybrid contribution 0.582 2.024 0.205 2.116 sum 17.057 -16.925 2.791 24.191 Atomic orbital electron populations 1.70077 1.07921 1.28360 1.50794 1.26021 0.95773 1.03524 0.94380 0.85474 0.78290 0.77795 0.79412 1.18945 1.20725 1.18903 1.21404 0.93712 0.90760 1.51591 0.91093 1.18772 0.93372 0.92887 0.96259 1.30487 1.12720 1.17191 1.11762 1.04820 0.74996 0.76283 0.72938 1.93482 1.72704 1.85482 1.46440 1.93492 1.72329 1.85498 1.46181 1.56928 1.57250 1.54138 1.10926 1.20691 0.93052 1.00320 0.84599 1.20669 0.96675 0.95178 0.95706 1.21322 0.98869 0.95550 0.99111 1.21040 0.91218 0.99421 0.97833 1.20059 0.91878 1.00183 1.06933 1.18384 0.84229 0.77300 0.74556 1.93217 1.88802 1.87630 1.46412 1.93185 1.66526 1.95285 1.60771 1.93201 1.93037 1.34759 1.95678 1.21227 1.01089 0.92072 0.94315 1.21418 0.90033 1.01263 0.98744 1.21777 0.93130 1.05134 0.86317 1.23492 0.99580 0.90827 1.05139 1.23893 0.95490 1.00632 1.04355 0.92349 0.97692 0.97403 0.84676 0.84751 0.84647 0.87903 0.85182 0.84669 0.82253 0.81159 0.85214 0.86151 0.85974 0.87280 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.36 4.98 29.85 0.15 1.51 16 10 C -0.59 -22.86 6.12 71.98 0.44 -22.42 16 11 S 2.61 93.06 5.43 -56.49 -0.31 92.75 16 12 O -0.99 -41.23 16.75 -127.65 -2.14 -43.37 16 13 O -0.98 -39.30 16.53 -127.65 -2.11 -41.41 16 14 N -0.96 -22.75 3.05 -497.42 -1.52 -24.27 16 15 C 0.14 2.48 5.32 85.63 0.46 2.93 16 16 C -0.08 -1.44 5.09 -19.87 -0.10 -1.54 16 17 C -0.13 -2.90 8.00 22.27 0.18 -2.72 16 18 C -0.08 -1.72 9.40 22.27 0.21 -1.51 16 19 C -0.19 -3.75 5.45 -19.87 -0.11 -3.86 16 20 C 0.51 10.70 3.36 71.23 0.24 10.94 16 21 F -0.18 -3.76 17.30 44.97 0.78 -2.99 16 22 F -0.18 -3.55 16.47 44.97 0.74 -2.81 16 23 F -0.19 -4.58 16.46 44.97 0.74 -3.84 16 24 C -0.07 -1.02 9.40 22.27 0.21 -0.81 16 25 C -0.10 -1.26 6.55 22.27 0.15 -1.11 16 26 C 0.04 0.82 6.36 45.00 0.29 1.11 16 27 C -0.15 -1.56 9.19 30.59 0.28 -1.28 16 28 C -0.20 -2.89 9.50 30.59 0.29 -2.60 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.14 4.72 5.88 -2.39 -0.01 4.70 16 33 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 34 H 0.14 1.41 6.01 -2.38 -0.01 1.39 16 35 H 0.10 2.10 6.76 -2.39 -0.02 2.08 16 36 H 0.13 3.15 7.69 -2.91 -0.02 3.12 16 37 H 0.14 3.02 7.60 -2.91 -0.02 2.99 16 38 H 0.16 1.58 7.61 -2.91 -0.02 1.56 16 39 H 0.17 1.15 5.35 -2.91 -0.02 1.14 16 40 H 0.13 2.89 7.28 -2.38 -0.02 2.87 16 41 H 0.12 0.76 4.80 -2.38 -0.01 0.74 16 42 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.11 1.57 4.51 -2.39 -0.01 1.56 16 Total: -1.00 -75.22 379.70 2.93 -72.28 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.06 Total: 14.72 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 3.37 Total: -50.40 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.23 Total: -80.65 kcal Atomic # 8 Polarization: -80.53 SS G_CDS: -4.25 Total: -84.78 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 2.26 Total: -9.64 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 93.06 SS G_CDS: -0.31 Total: 92.75 kcal Total: -75.22 2.93 -72.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.858 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds