Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99733 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99940 * 3 2 1 5 5 H 1.48503 * 109.47164 * 30.00163 * 3 2 1 6 6 H 1.48496 * 109.47047 * 149.99627 * 3 2 1 7 7 C 1.37875 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99661 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00157 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47130 * 185.04591 * 9 7 2 11 11 C 1.46902 * 110.99814 * 195.55222 * 10 9 7 12 12 C 1.50698 * 109.47069 * 166.07540 * 11 10 9 13 13 N 1.30981 * 126.43937 * 98.58556 * 12 11 10 14 14 C 1.35222 * 105.58257 * 179.97438 * 13 12 11 15 15 C 1.48394 * 126.41597 * 179.97438 * 14 13 12 16 16 C 1.39350 * 120.10708 * 359.72924 * 15 14 13 17 17 C 1.37985 * 119.88720 * 179.78364 * 16 15 14 18 18 C 1.38448 * 120.11315 * 0.49068 * 17 16 15 19 19 Cl 1.73595 * 119.89413 * 179.76391 * 18 17 16 20 20 C 1.38444 * 120.20933 * 359.74124 * 18 17 16 21 21 C 1.37979 * 120.11308 * 0.02562 * 20 18 17 22 22 N 1.30773 * 107.16912 * 0.02562 * 14 13 12 23 23 O 1.21292 * 110.09487 * 359.97438 * 22 14 13 24 24 C 1.46896 * 111.00243 * 71.59420 * 10 9 7 25 25 C 1.53173 * 109.54579 * 209.81201 * 24 10 9 26 26 C 1.53093 * 109.16417 * 183.15260 * 25 24 10 27 27 O 1.42911 * 109.41191 * 57.60701 * 26 25 24 28 28 C 1.42892 * 114.09862 * 298.84161 * 27 26 25 29 29 C 1.53090 * 109.41646 * 61.15984 * 28 27 26 30 30 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46749 * 65.04960 * 9 7 2 32 32 H 1.08999 * 109.47173 * 305.05180 * 9 7 2 33 33 H 1.08996 * 109.47381 * 46.07287 * 11 10 9 34 34 H 1.09001 * 109.47115 * 286.07048 * 11 10 9 35 35 H 1.07998 * 120.05118 * 0.02562 * 16 15 14 36 36 H 1.08006 * 119.93900 * 180.23004 * 17 16 15 37 37 H 1.08004 * 119.94634 * 179.97438 * 20 18 17 38 38 H 1.08001 * 120.06295 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.54168 * 330.08411 * 24 10 9 40 40 H 1.08998 * 109.52535 * 303.05490 * 25 24 10 41 41 H 1.09000 * 109.52410 * 63.24688 * 25 24 10 42 42 H 1.09001 * 109.47954 * 297.62944 * 26 25 24 43 43 H 1.08995 * 109.48373 * 177.58750 * 26 25 24 44 44 H 1.08994 * 109.48420 * 301.17348 * 28 27 26 45 45 H 1.09005 * 109.49152 * 181.14934 * 28 27 26 46 46 H 1.09004 * 109.52368 * 182.47972 * 29 28 27 47 47 H 1.09003 * 109.52003 * 62.29502 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2011 -3.6130 0.1207 11 6 1.5667 -4.8877 -0.2408 12 6 2.6282 -5.9391 -0.4377 13 7 3.0006 -6.8417 0.4353 14 6 3.9705 -7.5593 -0.1753 15 6 4.7164 -8.7040 0.4037 16 6 4.4441 -9.1308 1.7020 17 6 5.1372 -10.1986 2.2344 18 6 6.1089 -10.8393 1.4846 19 17 6.9817 -12.1781 2.1621 20 6 6.3863 -10.4158 0.1960 21 6 5.6953 -9.3521 -0.3470 22 7 4.1289 -7.0547 -1.3714 23 8 3.3665 -6.1259 -1.5362 24 6 2.7716 -3.6736 1.4729 25 6 4.1855 -4.2591 1.4069 26 6 4.7414 -4.3916 2.8271 27 8 3.8676 -5.2129 3.6046 28 6 2.5443 -4.6914 3.7406 29 6 1.9001 -4.5709 2.3570 30 1 -0.4850 0.8400 -0.0004 31 1 0.6937 -2.5968 -0.9321 32 1 0.5587 -2.5189 0.8410 33 1 1.0024 -4.7635 -1.1649 34 1 0.8925 -5.1973 0.5578 35 1 3.6891 -8.6291 2.2891 36 1 4.9243 -10.5324 3.2392 37 1 7.1454 -10.9185 -0.3850 38 1 5.9121 -9.0227 -1.3525 39 1 2.8104 -2.6705 1.8976 40 1 4.1513 -5.2416 0.9361 41 1 4.8270 -3.5974 0.8249 42 1 4.8133 -3.4041 3.2830 43 1 5.7307 -4.8476 2.7892 44 1 2.5874 -3.7079 4.2083 45 1 1.9506 -5.3630 4.3607 46 1 0.9070 -4.1322 2.4546 47 1 1.8197 -5.5597 1.9053 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071912092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = 62.746141 kcal Electronic energy + Delta-G solvation = -32956.038864 eV Core-core repulsion = 28554.736126 eV Total energy + Delta-G solvation = -4401.302739 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.45499 -39.58747 -39.53773 -36.94650 -36.89355 -35.60621 -33.26411 -32.65549 -31.50938 -31.37977 -30.76667 -30.50377 -28.13851 -25.80702 -24.80030 -24.06391 -23.42909 -23.21871 -22.47832 -21.39156 -20.86876 -19.43172 -18.06339 -17.79328 -17.04967 -16.48154 -16.09538 -15.97924 -15.73960 -15.53924 -15.20475 -14.67973 -14.42356 -14.36215 -14.14217 -13.95315 -13.91873 -13.85278 -13.59176 -12.93967 -12.64508 -12.38486 -12.36712 -12.09139 -12.05276 -11.92733 -11.72390 -11.63196 -11.34838 -11.23064 -11.01319 -10.92387 -10.86424 -10.80176 -10.63599 -10.47118 -10.13140 -10.11703 -9.54400 -9.46773 -9.42104 -9.21124 -8.77601 -8.55536 -7.58941 -6.15314 -4.17199 0.36346 0.95106 1.37356 1.74796 2.35099 2.95982 3.25339 3.32177 3.35030 3.40008 3.44489 3.94914 4.12644 4.31671 4.48384 4.52580 4.63806 4.90348 4.92531 5.12350 5.14253 5.19405 5.21022 5.27665 5.31757 5.40525 5.42689 5.54452 5.61108 5.66116 5.71422 5.75095 5.83729 5.85166 5.85806 5.92174 6.06795 6.14464 6.16839 6.24687 6.30976 6.36111 6.49495 6.67073 6.98877 7.12090 7.45185 7.62523 7.80261 7.94429 8.23169 8.29543 8.90426 9.47813 10.94856 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.002264 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.162139 B =12366.349581 C =13059.795739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.524 5.524 11 C 0.124 3.876 12 C 0.222 3.778 13 N -0.470 5.470 14 C 0.201 3.799 15 C -0.007 4.007 16 C -0.058 4.058 17 C -0.113 4.113 18 C -0.022 4.022 19 Cl -0.069 7.069 20 C -0.114 4.114 21 C -0.075 4.075 22 N -0.381 5.381 23 O 0.091 5.909 24 C 0.090 3.910 25 C -0.153 4.153 26 C 0.067 3.933 27 O -0.382 6.382 28 C 0.071 3.929 29 C -0.195 4.195 30 H 0.263 0.737 31 H 0.033 0.967 32 H 0.005 0.995 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -19.436 4.194 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.248 5.248 11 C -0.006 4.006 12 C 0.002 3.998 13 N -0.204 5.204 14 C -0.068 4.068 15 C -0.009 4.009 16 C -0.078 4.078 17 C -0.131 4.131 18 C -0.050 4.050 19 Cl -0.040 7.040 20 C -0.133 4.133 21 C -0.095 4.095 22 N -0.087 5.087 23 O 0.030 5.970 24 C -0.019 4.019 25 C -0.192 4.192 26 C -0.010 4.010 27 O -0.301 6.301 28 C -0.006 4.006 29 C -0.234 4.234 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.023 0.977 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.871 -19.995 3.770 22.197 hybrid contribution -0.324 1.211 0.340 1.299 sum 8.547 -18.784 4.110 21.042 Atomic orbital electron populations 1.69938 1.06006 1.27014 1.50571 1.24959 0.94870 0.99301 0.95250 0.86496 0.79698 0.82986 0.78246 1.20546 1.21296 1.19863 1.21066 0.93615 0.89459 1.50554 0.91755 1.19840 0.89673 0.86529 0.96836 1.62293 1.36694 1.00945 1.24909 1.20851 0.88729 0.87161 1.03838 1.28939 0.94373 0.95702 0.80819 1.72031 1.12867 1.07093 1.28378 1.23718 0.96221 0.98497 0.88389 1.17432 0.96356 0.92724 0.94370 1.21251 0.98432 0.94570 0.93565 1.21025 0.95517 0.95984 1.00596 1.21112 0.96695 0.92441 0.94706 1.98379 1.75409 1.45103 1.85123 1.20937 1.00977 0.97516 0.93850 1.21147 0.93870 0.94232 1.00214 1.74870 1.12644 1.02150 1.19075 1.85311 1.36348 1.36957 1.38336 1.21682 0.92610 0.99519 0.88051 1.22449 0.97555 1.02022 0.97132 1.22480 0.93050 0.94658 0.90816 1.87863 1.21502 1.48658 1.72039 1.22409 0.83464 0.98617 0.96114 1.23009 1.00289 1.02580 0.97479 0.92772 0.94940 0.97748 0.87381 0.89385 0.83369 0.84172 0.84307 0.84253 0.88640 0.91429 0.91008 0.93400 0.89846 0.93553 0.89560 0.91021 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.29 55.43 0.74 -24.04 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.51 -13.06 8.30 -34.44 -0.29 -13.34 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.20 4.44 4.66 -4.98 -0.02 4.41 16 10 N -0.52 -9.82 4.33 -229.31 -0.99 -10.81 16 11 C 0.12 1.92 5.10 -4.98 -0.03 1.89 16 12 C 0.22 3.40 5.68 -12.98 -0.07 3.32 16 13 N -0.47 -7.02 8.27 -9.88 -0.08 -7.10 16 14 C 0.20 2.94 7.41 -156.12 -1.16 1.78 16 15 C -0.01 -0.09 5.88 -104.89 -0.62 -0.70 16 16 C -0.06 -0.64 9.70 -39.26 -0.38 -1.02 16 17 C -0.11 -1.06 9.81 -39.60 -0.39 -1.44 16 18 C -0.02 -0.21 6.32 -39.43 -0.25 -0.46 16 19 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 20 C -0.11 -1.04 9.81 -39.60 -0.39 -1.42 16 21 C -0.07 -0.79 9.69 -39.26 -0.38 -1.17 16 22 N -0.38 -5.90 11.86 30.97 0.37 -5.54 16 23 O 0.09 1.45 11.29 18.04 0.20 1.66 16 24 C 0.09 1.58 2.01 -67.53 -0.14 1.44 16 25 C -0.15 -2.51 5.43 -26.59 -0.14 -2.66 16 26 C 0.07 0.99 6.84 37.21 0.25 1.24 16 27 O -0.38 -5.81 10.77 -35.23 -0.38 -6.19 16 28 C 0.07 1.00 6.84 37.20 0.25 1.25 16 29 C -0.19 -2.96 4.19 -26.59 -0.11 -3.07 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.03 0.78 7.76 -51.93 -0.40 0.37 16 32 H 0.00 0.11 7.69 -51.93 -0.40 -0.29 16 33 H 0.11 1.53 7.78 -51.93 -0.40 1.12 16 34 H 0.09 1.26 5.60 -51.93 -0.29 0.97 16 35 H 0.15 1.66 7.88 -52.49 -0.41 1.25 16 36 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.14 1.41 7.87 -52.49 -0.41 0.99 16 39 H 0.10 1.91 7.04 -51.93 -0.37 1.55 16 40 H 0.07 1.13 3.75 -51.93 -0.19 0.94 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 47 H 0.09 1.36 4.41 -51.93 -0.23 1.13 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -27.97 393.24 -10.71 -38.69 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.02 Total: 2.42 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.95 Total: -8.51 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.03 Total: -47.49 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.18 Total: -4.53 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.97 -10.71 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071912092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.433 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds